Wall clock time and date at job start Tue Mar 31 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47635 * 2 1 4 4 C 1.50703 * 109.47336 * 240.00005 * 2 1 3 5 5 O 1.21276 * 119.99871 * 240.00286 * 4 2 1 6 6 N 1.34782 * 119.99568 * 59.99901 * 4 2 1 7 7 C 1.46494 * 119.99501 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47247 * 174.96407 * 7 6 4 9 9 H 1.09000 * 109.46767 * 174.40633 * 8 7 6 10 10 C 1.53042 * 109.44937 * 294.37996 * 8 7 6 11 11 C 1.53116 * 109.27875 * 179.18839 * 10 8 7 12 12 C 1.53119 * 109.16048 * 302.34557 * 11 10 8 13 13 C 1.53034 * 109.27783 * 57.65415 * 12 11 10 14 14 N 1.46841 * 109.52429 * 300.81915 * 13 12 11 15 15 C 1.46903 * 111.00220 * 185.84166 * 14 13 12 16 16 C 1.50704 * 109.46989 * 300.49338 * 15 14 13 17 17 O 1.21297 * 119.99795 * 354.65141 * 16 15 14 18 18 N 1.34780 * 120.00174 * 174.65777 * 16 15 14 19 19 C 1.37093 * 119.99947 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00042 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99946 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00156 * 180.27667 * 21 19 18 23 23 Si 1.86796 * 119.99785 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47088 * 90.00535 * 23 21 19 25 25 H 1.48505 * 109.47558 * 210.00206 * 23 21 19 26 26 H 1.48506 * 109.47682 * 330.00484 * 23 21 19 27 27 C 1.53000 * 109.47324 * 120.00031 * 2 1 3 28 28 C 1.53002 * 117.50101 * 248.62510 * 27 2 1 29 29 C 1.52999 * 117.50338 * 180.02562 * 27 2 1 30 30 H 1.08992 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47204 * 299.99991 * 1 2 3 32 32 H 1.09001 * 109.47229 * 59.99814 * 1 2 3 33 33 H 0.96992 * 119.99827 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.47654 * 54.95554 * 7 6 4 35 35 H 1.09002 * 109.47201 * 294.95677 * 7 6 4 36 36 H 1.08998 * 109.50146 * 299.12866 * 10 8 7 37 37 H 1.09006 * 109.50120 * 59.20821 * 10 8 7 38 38 H 1.08996 * 109.52245 * 62.24650 * 11 10 8 39 39 H 1.09005 * 109.52461 * 182.37720 * 11 10 8 40 40 H 1.09001 * 109.50111 * 177.59420 * 12 11 10 41 41 H 1.09003 * 109.50214 * 297.67577 * 12 11 10 42 42 H 1.09005 * 109.46301 * 180.80471 * 13 12 11 43 43 H 1.08996 * 109.46689 * 60.83758 * 13 12 11 44 44 H 1.09000 * 109.47203 * 180.49530 * 15 14 13 45 45 H 1.08997 * 109.47062 * 60.49100 * 15 14 13 46 46 H 0.97000 * 119.99369 * 0.02562 * 18 16 15 47 47 H 0.96991 * 119.99894 * 179.72434 * 22 21 19 48 48 H 1.09004 * 115.54792 * 34.32827 * 27 2 1 49 49 H 1.08998 * 117.49714 * 359.97438 * 28 27 2 50 50 H 1.08994 * 117.50157 * 145.01868 * 28 27 2 51 51 H 1.09000 * 117.50182 * 214.98324 * 29 27 2 52 52 H 1.09007 * 117.49660 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9408 -3.6507 8 6 1.5839 -0.2963 -4.8967 9 1 2.0220 -0.7438 -5.7889 10 6 0.0711 -0.5274 -4.9006 11 6 -0.5386 0.1364 -6.1384 12 6 -0.1955 1.6286 -6.1288 13 6 1.3250 1.7972 -6.0894 14 7 1.8600 1.1460 -4.8869 15 6 3.2987 1.4056 -4.7434 16 6 4.0271 0.8806 -5.9538 17 8 3.4236 0.2579 -6.8019 18 7 5.3490 1.1029 -6.0939 19 6 6.0114 0.6258 -7.1953 20 1 5.4741 0.0714 -7.9504 21 6 7.3743 0.8545 -7.3394 22 7 8.0083 0.4019 -8.3978 23 14 8.3038 1.8128 -6.0328 24 1 8.8224 0.8740 -5.0056 25 1 9.4391 2.5345 -6.6619 26 1 7.3891 2.7916 -5.3921 27 6 2.0400 -0.7212 1.2492 28 6 2.7419 0.1226 2.3152 29 6 3.5550 -0.8276 1.4346 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.1493 0.5389 -2.5435 34 1 1.9066 -1.9911 -3.6066 35 1 3.2809 -0.8636 -3.6972 36 1 -0.1334 -1.5978 -4.9237 37 1 -0.3657 -0.0927 -4.0014 38 1 -0.1306 -0.3254 -7.0375 39 1 -1.6212 0.0104 -6.1233 40 1 -0.5905 2.0985 -7.0295 41 1 -0.6372 2.0979 -5.2497 42 1 1.5723 2.8586 -6.0681 43 1 1.7643 1.3399 -6.9759 44 1 3.6710 0.9047 -3.8498 45 1 3.4672 2.4789 -4.6552 46 1 5.8316 1.6005 -5.4154 47 1 8.9589 0.5650 -8.5003 48 1 1.4310 -1.5585 1.5902 49 1 2.8406 1.1915 2.1263 50 1 2.5947 -0.1593 3.3577 51 1 3.9430 -1.7349 1.8976 52 1 4.1884 -0.3840 0.6663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266839491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:41 Heat of formation + Delta-G solvation = -48.764815 kcal Electronic energy + Delta-G solvation = -31034.677903 eV Core-core repulsion = 27034.631184 eV Total energy + Delta-G solvation = -4000.046719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.37342 -39.55279 -37.67776 -37.03966 -34.62373 -34.17865 -33.08410 -32.63981 -31.75228 -30.68379 -27.68027 -26.33818 -24.78285 -24.43671 -22.72817 -22.43163 -21.88844 -21.10633 -19.89293 -19.54429 -19.30226 -18.19143 -17.11364 -16.21761 -16.00254 -15.66210 -15.61745 -15.18609 -14.87334 -14.75942 -14.54769 -14.13077 -14.07397 -13.71367 -13.55862 -13.34922 -13.10597 -12.80959 -12.79786 -12.57570 -12.28916 -12.15182 -11.93853 -11.76385 -11.74520 -11.62112 -11.44688 -11.29064 -11.21422 -10.72369 -10.64386 -10.56850 -10.52656 -10.23071 -10.18800 -10.09872 -10.06486 -9.59619 -9.48871 -9.37601 -8.84837 -8.24383 -7.58747 -6.38917 -3.90123 2.76745 2.97957 3.03377 3.11639 3.19861 3.60592 3.84189 4.04308 4.14981 4.37192 4.60609 4.65734 4.73770 4.85860 4.92089 4.94372 5.05625 5.07644 5.11847 5.15082 5.30189 5.34235 5.38401 5.49390 5.53789 5.60424 5.66730 5.70075 5.75996 5.80993 5.81840 5.82198 5.87762 5.90263 5.94372 6.00749 6.04429 6.08417 6.13561 6.16221 6.25359 6.32154 6.43704 6.60069 6.69506 7.21546 7.31415 7.48733 7.69858 8.07075 8.38591 8.49548 8.86509 9.34378 9.71812 10.73816 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.003827 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.657637 B = 7315.412620 C = 9671.445956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 H 0.095 0.905 4 C 0.510 3.490 5 O -0.538 6.538 6 N -0.715 5.715 7 C 0.126 3.874 8 C 0.054 3.946 9 H 0.099 0.901 10 C -0.105 4.105 11 C -0.120 4.120 12 C -0.111 4.111 13 C 0.037 3.963 14 N -0.507 5.507 15 C 0.032 3.968 16 C 0.415 3.585 17 O -0.577 6.577 18 N -0.582 5.582 19 C -0.308 4.308 20 H 0.119 0.881 21 C 0.044 3.956 22 N -0.877 5.877 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.134 4.134 28 C -0.185 4.185 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.371 0.629 47 H 0.274 0.726 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 3.692 17.065 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.113 0.887 4 C 0.295 3.705 5 O -0.414 6.414 6 N -0.368 5.368 7 C 0.002 3.998 8 C -0.054 4.054 9 H 0.117 0.883 10 C -0.143 4.143 11 C -0.157 4.157 12 C -0.149 4.149 13 C -0.091 4.091 14 N -0.231 5.231 15 C -0.099 4.099 16 C 0.201 3.799 17 O -0.462 6.462 18 N -0.219 5.219 19 C -0.437 4.437 20 H 0.137 0.863 21 C -0.160 4.160 22 N -0.516 5.516 23 Si 0.705 3.295 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.152 4.152 28 C -0.222 4.222 29 C -0.192 4.192 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.204 0.796 47 H 0.085 0.915 48 H 0.123 0.877 49 H 0.111 0.889 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.157 2.738 16.828 23.489 hybrid contribution 1.253 0.848 0.114 1.517 sum -14.904 3.586 16.941 22.847 Atomic orbital electron populations 1.21726 0.92686 1.02687 1.02595 1.20885 0.97394 0.99941 0.91973 0.88680 1.20596 0.80433 0.84862 0.84609 1.90705 1.37633 1.26287 1.86800 1.45982 1.53664 1.32138 1.05040 1.21456 0.98983 0.96124 0.83238 1.22199 0.95731 0.89176 0.98292 0.88316 1.21559 0.94427 1.00017 0.98265 1.21549 0.99596 0.96043 0.98548 1.21530 0.95888 0.96181 1.01261 1.22317 0.94380 0.98596 0.93757 1.62414 1.11323 1.10678 1.38674 1.22179 0.88469 1.01874 0.97428 1.20983 0.82933 0.86109 0.89856 1.90439 1.65951 1.44962 1.44833 1.42406 1.08156 1.49608 1.21766 1.19443 0.91921 1.32809 0.99524 0.86300 1.25070 0.96392 0.97589 0.96949 1.69619 1.10268 1.44696 1.27059 0.86687 0.80582 0.80387 0.81856 1.19470 1.20067 1.19448 1.21916 0.96190 1.01368 0.95740 1.23080 1.05416 0.97562 0.96181 1.22765 0.93581 1.00974 1.01886 0.92111 0.91481 0.91921 0.75795 0.91189 0.91602 0.91896 0.91923 0.91807 0.92452 0.92059 0.92010 0.91768 0.90481 0.88937 0.89383 0.79641 0.91498 0.87723 0.88948 0.88941 0.88954 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.07 37.15 0.34 -0.66 16 2 C -0.08 -0.75 2.88 -91.77 -0.26 -1.01 16 3 H 0.10 0.78 7.90 -51.93 -0.41 0.37 16 4 C 0.51 6.44 7.03 -10.98 -0.08 6.36 16 5 O -0.54 -8.96 15.08 5.56 0.08 -8.88 16 6 N -0.72 -8.31 4.90 -60.30 -0.30 -8.60 16 7 C 0.13 1.78 4.55 -4.04 -0.02 1.76 16 8 C 0.05 0.78 1.72 -67.72 -0.12 0.66 16 9 H 0.10 1.81 5.71 -51.93 -0.30 1.52 16 10 C -0.10 -1.22 5.26 -26.65 -0.14 -1.36 16 11 C -0.12 -1.39 6.00 -26.61 -0.16 -1.55 16 12 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 13 C 0.04 0.54 5.00 -3.84 -0.02 0.52 16 14 N -0.51 -7.06 4.04 -228.12 -0.92 -7.98 16 15 C 0.03 0.51 5.45 -4.97 -0.03 0.48 16 16 C 0.42 8.80 7.18 -10.98 -0.08 8.72 16 17 O -0.58 -13.93 11.22 5.54 0.06 -13.87 16 18 N -0.58 -13.46 5.09 -10.96 -0.06 -13.51 16 19 C -0.31 -8.53 10.16 -14.94 -0.15 -8.68 16 20 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 21 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 22 N -0.88 -25.39 13.96 55.50 0.77 -24.61 16 23 Si 0.88 19.30 27.73 -169.99 -4.71 14.58 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 27 C -0.13 -1.30 4.73 -90.62 -0.43 -1.73 16 28 C -0.19 -1.55 10.17 -26.75 -0.27 -1.82 16 29 C -0.16 -1.67 8.97 -26.76 -0.24 -1.91 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 7.56 -51.93 -0.39 0.01 16 33 H 0.41 4.05 6.85 -40.82 -0.28 3.77 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.09 6.56 -51.93 -0.34 0.75 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.65 7.32 -51.93 -0.38 0.27 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 43 H 0.08 1.43 5.66 -51.93 -0.29 1.13 16 44 H 0.09 1.39 6.01 -51.93 -0.31 1.08 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 49 H 0.09 0.70 8.05 -51.93 -0.42 0.28 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 52 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 399.49 15.07 6.02 6.02 Total: -1.00 -31.44 399.49 -9.79 -41.23 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -8.83 Total: 16.19 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.92 Total: -0.57 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.50 Total: -54.71 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.15 Total: -22.74 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.44 -9.79 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266839491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.540 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds