Wall clock time and date at job start Tue Mar 31 2020 21:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50700 * 119.99794 * 2 1 4 4 C 1.32997 * 119.99944 * 179.73041 * 2 1 3 5 5 C 1.47096 * 119.99688 * 188.35467 * 4 2 1 6 6 O 1.21614 * 120.00586 * 3.31532 * 5 4 2 7 7 N 1.34781 * 119.99703 * 183.31847 * 5 4 2 8 8 C 1.46925 * 120.63054 * 354.76198 * 7 5 4 9 9 C 1.53622 * 108.54372 * 126.36721 * 8 7 5 10 10 C 1.53041 * 109.24033 * 54.85908 * 9 8 7 11 11 C 1.52996 * 109.45934 * 178.49146 * 10 9 8 12 12 H 1.09008 * 109.47552 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47510 * 60.06821 * 11 10 9 14 14 N 1.46906 * 109.47230 * 300.06404 * 11 10 9 15 15 C 1.46903 * 111.00049 * 204.99972 * 14 11 10 16 16 C 1.50697 * 109.46872 * 179.97438 * 15 14 11 17 17 O 1.21295 * 120.00164 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99995 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00220 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99936 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99960 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00444 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99615 * 179.97438 * 21 19 18 24 24 H 1.48489 * 109.47211 * 60.00223 * 23 21 19 25 25 H 1.48502 * 109.46639 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47241 * 299.99774 * 23 21 19 27 27 C 1.53044 * 109.53468 * 298.50786 * 10 9 8 28 28 C 1.46920 * 120.62983 * 175.04114 * 7 5 4 29 29 H 1.08993 * 109.47457 * 89.99779 * 1 2 3 30 30 H 1.09001 * 109.46784 * 210.00013 * 1 2 3 31 31 H 1.09001 * 109.46891 * 329.99613 * 1 2 3 32 32 H 1.09001 * 109.47168 * 95.88931 * 3 2 1 33 33 H 1.09007 * 109.46793 * 215.88161 * 3 2 1 34 34 H 1.08997 * 109.47515 * 335.88860 * 3 2 1 35 35 H 1.08000 * 120.00003 * 8.34985 * 4 2 1 36 36 H 1.08995 * 109.58738 * 246.20428 * 8 7 5 37 37 H 1.09004 * 109.58933 * 6.62641 * 8 7 5 38 38 H 1.08998 * 109.63731 * 294.86497 * 9 8 7 39 39 H 1.08998 * 109.43149 * 174.72360 * 9 8 7 40 40 H 1.08997 * 109.46402 * 58.52980 * 10 9 8 41 41 H 1.09006 * 109.46457 * 299.99980 * 13 11 10 42 42 H 1.08993 * 109.46969 * 59.99923 * 13 11 10 43 43 H 1.09001 * 109.46909 * 180.02562 * 13 11 10 44 44 H 1.00906 * 110.99836 * 81.04947 * 14 11 10 45 45 H 1.08993 * 109.47486 * 300.00272 * 15 14 11 46 46 H 1.08997 * 109.47054 * 60.00341 * 15 14 11 47 47 H 0.96998 * 119.99921 * 0.02562 * 18 16 15 48 48 H 0.96989 * 120.00023 * 179.97438 * 22 21 19 49 49 H 1.08993 * 109.50207 * 301.41201 * 27 10 9 50 50 H 1.09007 * 109.49478 * 181.31746 * 27 10 9 51 51 H 1.09001 * 109.58974 * 353.37593 * 28 7 5 52 52 H 1.09009 * 109.58792 * 113.65713 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0054 5 6 3.6313 -1.1576 0.1906 6 8 4.2221 -0.1152 0.3988 7 7 4.3137 -2.3183 0.1293 8 6 3.6040 -3.5976 -0.0071 9 6 4.1783 -4.3480 -1.2183 10 6 5.6938 -4.4847 -1.0548 11 6 6.2660 -5.2645 -2.2403 12 1 7.3455 -5.3624 -2.1238 13 6 5.9600 -4.5156 -3.5389 14 7 5.6550 -6.5995 -2.2891 15 6 6.5344 -7.5562 -2.9742 16 6 5.8758 -8.9113 -3.0042 17 8 4.7813 -9.0649 -2.5045 18 7 6.5029 -9.9526 -3.5863 19 6 5.9036 -11.1854 -3.6140 20 1 4.9290 -11.3222 -3.1691 21 6 6.5499 -12.2588 -4.2146 22 7 7.7359 -12.0926 -4.7556 23 14 5.7335 -13.9386 -4.2517 24 1 4.4420 -13.8453 -4.9785 25 1 6.6228 -14.9059 -4.9438 26 1 5.4873 -14.4001 -2.8620 27 6 6.3305 -3.0940 -1.0042 28 6 5.7809 -2.3288 0.2038 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 2.5335 1.5671 1.0222 33 1 3.1633 1.2034 -0.6024 34 1 1.6299 2.0888 -0.4198 35 1 1.6406 -2.0828 -0.1260 36 1 3.7457 -4.1921 0.8954 37 1 2.5412 -3.4113 -0.1612 38 1 3.9593 -3.7931 -2.1306 39 1 3.7280 -5.3389 -1.2778 40 1 5.9126 -5.0182 -0.1298 41 1 4.8807 -4.4171 -3.6558 42 1 6.4134 -3.5251 -3.5027 43 1 6.3674 -5.0714 -4.3835 44 1 4.7466 -6.5656 -2.7272 45 1 6.7156 -7.2173 -3.9941 46 1 7.4822 -7.6251 -2.4405 47 1 7.3783 -9.8299 -3.9856 48 1 8.1872 -12.8419 -5.1745 49 1 6.0914 -2.5508 -1.9184 50 1 7.4122 -3.1923 -0.9112 51 1 6.1550 -1.3051 0.1890 52 1 6.0966 -2.8198 1.1245 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267167474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:17 Heat of formation + Delta-G solvation = -62.256673 kcal Electronic energy + Delta-G solvation = -29277.074082 eV Core-core repulsion = 25276.442312 eV Total energy + Delta-G solvation = -4000.631770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54257 -38.89924 -38.02615 -36.23496 -35.47970 -33.95638 -32.89083 -31.37226 -31.17611 -29.67156 -28.28642 -27.94631 -26.48728 -25.43099 -24.03446 -23.48049 -22.35154 -20.59216 -19.37760 -19.09849 -18.20153 -17.90741 -17.50028 -16.14901 -15.89509 -15.48795 -15.32600 -14.83932 -14.80144 -14.63043 -14.34214 -14.32671 -14.16806 -13.95617 -13.68418 -13.45095 -13.41482 -13.10821 -12.79620 -12.59064 -12.40926 -12.33029 -12.29686 -12.10025 -11.98812 -11.83568 -11.57713 -11.53060 -11.50400 -11.09423 -11.02969 -10.79839 -10.49034 -10.44515 -10.28216 -10.20623 -9.68694 -9.50144 -9.42262 -8.72105 -8.43823 -8.02240 -7.95114 -6.41773 -3.82680 1.09462 2.86195 3.09171 3.19722 3.25408 3.29726 3.91351 4.08132 4.28823 4.29930 4.46085 4.55837 4.71636 4.77412 4.86358 4.94313 5.06062 5.10296 5.12304 5.13069 5.18144 5.24316 5.30776 5.33193 5.33473 5.42438 5.45389 5.48766 5.56246 5.62280 5.68873 5.74227 5.76242 5.82684 5.87975 5.90679 5.92437 6.06295 6.09154 6.13558 6.21048 6.25592 6.29189 6.40784 6.45243 7.26835 7.27940 7.54711 7.69466 8.05187 8.06164 8.61324 9.17698 9.54497 10.05990 10.75885 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.001839 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.646805 B =15218.410025 C =15932.642690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.032 4.032 3 C -0.124 4.124 4 C -0.241 4.241 5 C 0.548 3.452 6 O -0.548 6.548 7 N -0.608 5.608 8 C 0.106 3.894 9 C -0.132 4.132 10 C -0.072 4.072 11 C 0.088 3.912 12 H 0.076 0.924 13 C -0.187 4.187 14 N -0.662 5.662 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.131 4.131 28 C 0.114 3.886 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.089 0.911 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.047 23.802 6.920 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.034 4.034 3 C -0.180 4.180 4 C -0.261 4.261 5 C 0.340 3.660 6 O -0.429 6.429 7 N -0.340 5.340 8 C -0.017 4.017 9 C -0.170 4.170 10 C -0.092 4.092 11 C -0.022 4.022 12 H 0.095 0.905 13 C -0.246 4.246 14 N -0.294 5.294 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.169 4.169 28 C -0.009 4.009 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.168 0.832 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.107 0.893 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.120 23.880 7.893 26.139 hybrid contribution 0.164 -0.829 -1.351 1.594 sum -6.956 23.051 6.542 24.950 Atomic orbital electron populations 1.21019 0.91169 1.03332 1.02953 1.22596 0.95884 0.95478 0.89421 1.21153 1.00259 0.93048 1.03565 1.22489 0.93569 0.99048 1.11021 1.18541 0.87906 0.82946 0.76615 1.90729 1.71042 1.31174 1.49962 1.48015 1.07020 1.06476 1.72513 1.21973 0.96712 0.83884 0.99135 1.22088 0.96126 1.01291 0.97466 1.21084 0.94625 0.94230 0.99213 1.21568 0.98853 0.88401 0.93411 0.90539 1.22631 1.02109 1.01123 0.98748 1.60199 1.05740 1.05175 1.58258 1.21693 0.96980 0.92490 0.97056 1.19838 0.87600 0.85653 0.84277 1.90514 1.21622 1.84561 1.50150 1.41864 1.19388 1.08237 1.50576 1.19651 1.03551 0.84841 1.34905 0.87991 1.25261 0.95883 1.00073 0.96728 1.69600 1.13720 1.32998 1.38018 0.85917 0.78712 0.80998 0.78582 1.19939 1.20991 1.19895 1.22042 1.00345 0.96087 0.98466 1.21560 0.79217 1.01984 0.98093 0.90389 0.91010 0.90861 0.90403 0.89246 0.92752 0.85278 0.91062 0.89606 0.91631 0.89348 0.90155 0.92215 0.92086 0.92761 0.83162 0.93981 0.89729 0.77483 0.91836 0.91329 0.90714 0.89264 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.03 -0.26 6.11 -101.16 -0.62 -0.88 16 3 C -0.12 -1.08 8.45 36.01 0.30 -0.77 16 4 C -0.24 -2.16 8.95 -37.81 -0.34 -2.50 16 5 C 0.55 6.21 7.52 -12.67 -0.10 6.12 16 6 O -0.55 -7.57 12.67 5.27 0.07 -7.50 16 7 N -0.61 -6.09 2.97 -173.90 -0.52 -6.61 16 8 C 0.11 0.92 6.38 -3.49 -0.02 0.89 16 9 C -0.13 -1.26 4.74 -26.39 -0.13 -1.39 16 10 C -0.07 -0.73 2.17 -90.58 -0.20 -0.92 16 11 C 0.09 1.01 2.42 -67.71 -0.16 0.84 16 12 H 0.08 0.87 7.80 -51.92 -0.41 0.47 16 13 C -0.19 -1.95 8.46 37.16 0.31 -1.63 16 14 N -0.66 -10.04 5.38 -107.99 -0.58 -10.62 16 15 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 16 C 0.44 10.27 7.82 -10.99 -0.09 10.19 16 17 O -0.58 -15.61 15.78 5.54 0.09 -15.52 16 18 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.13 -1.16 4.96 -26.61 -0.13 -1.29 16 28 C 0.11 1.09 6.42 -3.71 -0.02 1.06 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.08 0.72 8.02 -51.93 -0.42 0.31 16 33 H 0.09 0.96 6.17 -51.93 -0.32 0.64 16 34 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.13 0.92 5.86 -52.49 -0.31 0.62 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.62 5.30 -51.93 -0.28 0.35 16 38 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 39 H 0.09 0.96 7.14 -51.93 -0.37 0.59 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.62 6.45 -51.93 -0.33 0.28 16 42 H 0.06 0.56 6.46 -51.93 -0.34 0.23 16 43 H 0.05 0.60 7.45 -51.93 -0.39 0.22 16 44 H 0.35 5.50 7.39 -39.29 -0.29 5.21 16 45 H 0.04 0.66 7.43 -51.93 -0.39 0.28 16 46 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.07 0.64 6.51 -51.93 -0.34 0.30 16 50 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 51 H 0.09 0.94 7.03 -51.93 -0.37 0.57 16 52 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -32.09 403.51 -8.81 -40.90 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -8.50 Total: 13.07 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.09 Total: 2.26 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.43 Total: -55.24 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.15 Total: -23.02 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.09 -8.81 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267167474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.358 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds