Wall clock time and date at job start Tue Mar 31 2020 21:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47220 * 2 1 4 4 N 1.46497 * 109.47424 * 239.99361 * 2 1 3 5 5 C 1.36941 * 119.99746 * 85.00114 * 4 2 1 6 6 H 1.08000 * 119.99726 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99973 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99635 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47277 * 89.99998 * 9 7 5 11 11 H 1.48505 * 109.47175 * 209.99794 * 9 7 5 12 12 H 1.48497 * 109.47430 * 329.99728 * 9 7 5 13 13 C 1.53010 * 109.46754 * 119.99556 * 2 1 3 14 14 C 1.53037 * 109.45851 * 300.00029 * 13 2 1 15 15 C 1.53197 * 109.31004 * 178.61743 * 14 13 2 16 16 N 1.46929 * 108.77683 * 54.63358 * 15 14 13 17 17 C 1.34778 * 120.62665 * 126.36568 * 16 15 14 18 18 O 1.21283 * 120.00221 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99785 * 179.97438 * 17 16 15 20 20 C 1.52996 * 109.47403 * 180.02562 * 19 17 16 21 21 H 1.08998 * 110.43587 * 303.91482 * 20 19 17 22 22 C 1.54631 * 110.48801 * 181.22865 * 20 19 17 23 23 C 1.54661 * 101.68464 * 216.30893 * 22 20 19 24 24 N 1.46765 * 105.38357 * 25.76826 * 23 22 20 25 25 C 1.46499 * 124.35294 * 162.85294 * 24 23 22 26 26 C 1.34425 * 111.30057 * 342.58957 * 24 23 22 27 27 O 1.21281 * 124.94631 * 180.69410 * 26 24 23 28 28 C 1.46916 * 118.73746 * 306.64738 * 16 15 14 29 29 C 1.52763 * 109.01450 * 53.30867 * 28 16 15 30 30 H 1.09005 * 109.47220 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47425 * 300.00319 * 1 2 3 32 32 H 1.09006 * 109.46737 * 60.00711 * 1 2 3 33 33 H 0.97000 * 120.00470 * 264.99952 * 4 2 1 34 34 H 0.97005 * 119.99758 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46102 * 59.97823 * 13 2 1 36 36 H 1.08998 * 109.49962 * 58.66623 * 14 13 2 37 37 H 1.09003 * 109.49709 * 298.56593 * 14 13 2 38 38 H 1.09004 * 109.58124 * 294.84656 * 15 14 13 39 39 H 1.09001 * 109.70286 * 174.49703 * 15 14 13 40 40 H 1.09002 * 109.47169 * 60.00513 * 19 17 16 41 41 H 1.09005 * 109.47615 * 300.00939 * 19 17 16 42 42 H 1.08990 * 110.96857 * 334.64427 * 22 20 19 43 43 H 1.08999 * 110.96953 * 98.37159 * 22 20 19 44 44 H 1.09002 * 110.39990 * 266.74468 * 23 22 20 45 45 H 1.08992 * 110.18247 * 144.68258 * 23 22 20 46 46 H 1.09002 * 109.47391 * 179.72585 * 25 24 23 47 47 H 1.09001 * 109.46813 * 59.72641 * 25 24 23 48 48 H 1.09004 * 109.47041 * 299.72768 * 25 24 23 49 49 H 1.09008 * 109.58954 * 173.14459 * 28 16 15 50 50 H 1.09005 * 109.59087 * 293.56393 * 28 16 15 51 51 H 1.08994 * 109.56872 * 185.55477 * 29 28 16 52 52 H 1.08998 * 109.38376 * 65.51246 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0076 -2.3757 6 1 1.8927 1.0403 -2.4241 7 6 2.6115 -0.6622 -3.5092 8 7 2.9245 -1.9392 -3.4499 9 14 2.7906 0.2697 -5.1181 10 1 4.1533 0.8539 -5.2028 11 1 2.5796 -0.6613 -6.2556 12 1 1.7813 1.3575 -5.1751 13 6 2.0399 -0.7212 1.2494 14 6 1.5296 0.0005 2.4987 15 6 2.0133 -0.7441 3.7471 16 7 3.4751 -0.8769 3.6817 17 6 4.2490 -0.4573 4.7023 18 8 3.7399 0.0350 5.6868 19 6 5.7469 -0.6010 4.6205 20 6 6.3825 -0.0523 5.8995 21 1 6.0776 0.9813 6.0628 22 6 7.9233 -0.1602 5.8275 23 6 8.2824 -0.4990 7.2932 24 7 7.0894 -1.1512 7.8456 25 6 7.0794 -1.9571 9.0689 26 6 6.0057 -0.9095 7.0878 27 8 4.8884 -1.3186 7.3228 28 6 4.0775 -1.4701 2.4802 29 6 3.5704 -0.7225 1.2483 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2491 -1.6319 -1.1524 34 1 3.2479 -2.3966 -4.2419 35 1 1.6762 -1.7487 1.2495 36 1 0.4399 0.0216 2.4871 37 1 1.9136 1.0206 2.5119 38 1 1.5576 -1.7337 3.7817 39 1 1.7369 -0.1830 4.6398 40 1 6.1190 -0.0431 3.7612 41 1 6.0054 -1.6541 4.5095 42 1 8.2272 -0.9601 5.1523 43 1 8.3673 0.7894 5.5288 44 1 8.5064 0.4111 7.8496 45 1 9.1330 -1.1799 7.3242 46 1 6.0689 -2.3198 9.2570 47 1 7.4083 -1.3458 9.9093 48 1 7.7538 -2.8053 8.9508 49 1 5.1629 -1.3859 2.5358 50 1 3.7937 -2.5202 2.4094 51 1 3.9331 -1.2160 0.3467 52 1 3.9351 0.3044 1.2727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267486660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:24 Heat of formation + Delta-G solvation = -60.831022 kcal Electronic energy + Delta-G solvation = -30263.574918 eV Core-core repulsion = 26263.004969 eV Total energy + Delta-G solvation = -4000.569949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93369 -39.75691 -37.77160 -36.48587 -35.30506 -34.07469 -32.86476 -31.26136 -30.68632 -29.84428 -28.22425 -27.19787 -25.92383 -24.96532 -23.59649 -22.67308 -21.88906 -21.02891 -19.78120 -19.47919 -18.64787 -17.39540 -17.18562 -16.80967 -16.48335 -15.85308 -15.46500 -15.15638 -14.86985 -14.09994 -14.07045 -14.00365 -13.87153 -13.83776 -13.59951 -13.38908 -12.96656 -12.89097 -12.76315 -12.54934 -12.48481 -12.34592 -12.26865 -12.02853 -11.94397 -11.69766 -11.50475 -11.27600 -11.10568 -10.91503 -10.84966 -10.68547 -10.23037 -10.18058 -10.12634 -9.82332 -9.75091 -9.55018 -9.41929 -8.95544 -8.89138 -8.38788 -6.93114 -5.75934 -3.03403 2.52263 2.76537 2.85938 3.12931 3.42823 3.48789 3.49933 4.02896 4.08323 4.34222 4.54120 4.59308 4.82412 4.85933 4.92312 4.97936 5.06650 5.10947 5.13945 5.15124 5.22696 5.30213 5.34986 5.40357 5.41993 5.48321 5.51924 5.56558 5.63455 5.74718 5.77438 5.89179 5.99642 6.02580 6.11847 6.18470 6.26818 6.29770 6.36923 6.50002 6.54266 6.66022 6.70924 6.85795 6.88114 6.98813 7.16860 7.58970 7.71615 8.11628 8.40178 8.43328 9.54420 10.13250 10.48199 11.46824 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.002313 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.557683 B =12103.437246 C =13054.277762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.233 4.233 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.089 4.089 14 C -0.127 4.127 15 C 0.115 3.885 16 N -0.612 5.612 17 C 0.512 3.488 18 O -0.522 6.522 19 C -0.124 4.124 20 C -0.107 4.107 21 H 0.115 0.885 22 C -0.130 4.130 23 C 0.105 3.895 24 N -0.634 5.634 25 C 0.095 3.905 26 C 0.517 3.483 27 O -0.497 6.497 28 C 0.106 3.894 29 C -0.123 4.123 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.091 0.909 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.829 1.419 22.113 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.364 4.364 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.108 4.108 14 C -0.166 4.166 15 C -0.007 4.007 16 N -0.346 5.346 17 C 0.299 3.701 18 O -0.397 6.397 19 C -0.164 4.164 20 C -0.129 4.129 21 H 0.133 0.867 22 C -0.168 4.168 23 C -0.019 4.019 24 N -0.371 5.371 25 C -0.047 4.047 26 C 0.303 3.697 27 O -0.369 6.369 28 C -0.016 4.016 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.085 0.915 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.939 1.527 22.708 25.252 hybrid contribution 0.280 0.078 -1.092 1.130 sum 11.219 1.605 21.617 24.408 Atomic orbital electron populations 1.22494 0.99568 1.00745 0.99830 1.20221 0.91570 0.95294 0.86107 0.93773 1.42420 1.78070 1.10618 1.05306 1.19229 1.36002 0.93760 0.87403 0.91368 1.24703 1.02506 0.95954 0.97932 1.69654 1.51259 1.08589 1.28800 0.86234 0.77724 0.78604 0.83904 1.21834 1.21884 1.20887 1.21367 0.94976 0.99883 0.94618 1.22010 1.01034 0.99573 0.93947 1.21558 0.79357 1.00534 0.99267 1.48103 1.07064 1.61847 1.17630 1.20355 0.88979 0.78312 0.82455 1.90725 1.75021 1.43588 1.30356 1.21568 0.93274 1.03459 0.98116 1.21733 0.95502 1.01853 0.93807 0.86712 1.22747 0.94141 1.03881 0.96037 1.22064 0.88114 0.97676 0.94013 1.48196 1.10110 1.52394 1.26436 1.21503 1.03592 0.94363 0.85212 1.20760 0.84116 0.80391 0.84386 1.90792 1.21064 1.52007 1.73071 1.21764 0.97783 0.97452 0.84639 1.21815 0.96129 1.00942 0.97203 0.93614 0.94271 0.93083 0.78353 0.93628 0.91474 0.90571 0.91796 0.92005 0.89451 0.87753 0.88861 0.89536 0.88819 0.91179 0.90426 0.90018 0.92374 0.92303 0.90305 0.91518 0.89015 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.14 37.16 0.34 -2.64 16 2 C 0.18 3.40 2.47 -67.93 -0.17 3.23 16 3 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.26 4.41 -53.42 -0.24 -17.49 16 5 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 9 Si 0.90 22.10 29.55 -169.99 -5.02 17.07 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C -0.09 -1.39 1.79 -90.57 -0.16 -1.55 16 14 C -0.13 -1.75 5.04 -26.61 -0.13 -1.88 16 15 C 0.12 1.59 6.44 -3.71 -0.02 1.57 16 16 N -0.61 -8.35 2.98 -173.03 -0.52 -8.86 16 17 C 0.51 7.32 7.14 -10.99 -0.08 7.24 16 18 O -0.52 -9.36 13.11 -17.48 -0.23 -9.59 16 19 C -0.12 -1.23 3.47 -27.89 -0.10 -1.33 16 20 C -0.11 -1.01 2.57 -90.63 -0.23 -1.24 16 21 H 0.11 1.15 8.02 -51.93 -0.42 0.74 16 22 C -0.13 -0.69 6.71 -25.00 -0.17 -0.86 16 23 C 0.10 0.57 7.36 -3.02 -0.02 0.55 16 24 N -0.63 -5.76 3.33 -180.17 -0.60 -6.36 16 25 C 0.10 0.70 11.14 59.85 0.67 1.36 16 26 C 0.52 6.48 7.29 -10.85 -0.08 6.40 16 27 O -0.50 -8.63 14.51 -17.48 -0.25 -8.88 16 28 C 0.11 1.31 6.31 -3.94 -0.02 1.28 16 29 C -0.12 -1.83 5.21 -26.83 -0.14 -1.97 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.38 9.70 7.58 -40.82 -0.31 9.39 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.30 7.00 -51.93 -0.36 0.93 16 40 H 0.10 0.81 7.68 -51.93 -0.40 0.41 16 41 H 0.09 0.85 7.95 -51.93 -0.41 0.43 16 42 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 43 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.79 5.94 -51.92 -0.31 0.48 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.09 1.59 7.40 -51.93 -0.38 1.21 16 52 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -35.23 401.47 -9.75 -44.98 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -9.10 Total: 6.63 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.57 Total: 3.21 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.63 Total: -59.47 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.48 Total: -18.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.23 -9.75 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267486660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.852 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds