Wall clock time and date at job start Tue Mar 31 2020 21:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 5 5 C 1.36939 * 119.99933 * 275.27511 * 4 2 1 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 2 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 2 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47144 * 90.00258 * 9 7 5 11 11 H 1.48500 * 109.47140 * 210.00775 * 9 7 5 12 12 H 1.48502 * 109.46967 * 330.00206 * 9 7 5 13 13 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 14 14 C 1.53043 * 109.45432 * 180.02562 * 13 2 1 15 15 C 1.53191 * 109.31145 * 178.61309 * 14 13 2 16 16 N 1.46923 * 108.78040 * 54.63279 * 15 14 13 17 17 C 1.34777 * 120.63107 * 126.36690 * 16 15 14 18 18 O 1.21284 * 119.99470 * 180.02562 * 17 16 15 19 19 C 1.50693 * 120.00219 * 0.02562 * 17 16 15 20 20 C 1.53000 * 109.47211 * 179.97438 * 19 17 16 21 21 H 1.09007 * 110.43215 * 56.08759 * 20 19 17 22 22 C 1.54623 * 110.48654 * 178.77145 * 20 19 17 23 23 C 1.54487 * 101.76371 * 143.47716 * 22 20 19 24 24 N 1.46756 * 105.47391 * 334.58605 * 23 22 20 25 25 C 1.46502 * 124.35076 * 196.99463 * 24 23 22 26 26 C 1.34426 * 111.30159 * 17.01419 * 24 23 22 27 27 O 1.21283 * 124.94098 * 179.55750 * 26 24 23 28 28 C 1.46925 * 118.73615 * 306.39656 * 16 15 14 29 29 C 1.53029 * 109.46715 * 60.00234 * 13 2 1 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 32 32 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 33 33 H 0.97001 * 119.99790 * 94.99484 * 4 2 1 34 34 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46031 * 300.02264 * 13 2 1 36 36 H 1.09001 * 109.50154 * 298.55893 * 14 13 2 37 37 H 1.09003 * 109.50248 * 58.65997 * 14 13 2 38 38 H 1.09005 * 109.58818 * 294.83922 * 15 14 13 39 39 H 1.09000 * 109.58731 * 174.42300 * 15 14 13 40 40 H 1.08995 * 109.47238 * 300.00143 * 19 17 16 41 41 H 1.08999 * 109.47118 * 60.00171 * 19 17 16 42 42 H 1.08996 * 110.97548 * 261.59646 * 22 20 19 43 43 H 1.09005 * 110.97270 * 25.36253 * 22 20 19 44 44 H 1.09004 * 110.24377 * 215.58338 * 23 22 20 45 45 H 1.09001 * 110.24474 * 93.58549 * 23 22 20 46 46 H 1.08999 * 109.47334 * 179.97438 * 25 24 23 47 47 H 1.09001 * 109.46917 * 299.99941 * 25 24 23 48 48 H 1.09000 * 109.47069 * 59.99743 * 25 24 23 49 49 H 1.09000 * 109.58572 * 293.81347 * 28 16 15 50 50 H 1.09000 * 109.70494 * 173.46208 * 28 16 15 51 51 H 1.09002 * 109.49682 * 301.33283 * 29 13 2 52 52 H 1.09004 * 109.49962 * 61.39135 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1438 -0.0090 2.3771 6 1 1.8869 1.0389 2.4256 7 6 2.6009 -0.6648 3.5119 8 7 2.9143 -1.9418 3.4526 9 14 2.7727 0.2653 5.1227 10 1 1.5016 0.1741 5.8849 11 1 3.8734 -0.3294 5.9227 12 1 3.0798 1.6906 4.8410 13 6 2.0399 -0.7212 -1.2493 14 6 3.5703 -0.7216 -1.2487 15 6 4.0772 -1.4743 -2.4829 16 7 3.4744 -0.8767 -3.6821 17 6 4.2478 -0.4570 -4.7030 18 8 3.7380 0.0351 -5.6874 19 6 5.7458 -0.5992 -4.6214 20 6 6.3806 -0.0506 -5.9009 21 1 6.0746 0.9828 -6.0647 22 6 7.9215 -0.1569 -5.8290 23 6 8.2819 -0.5014 -7.2912 24 7 7.0882 -1.1499 -7.8464 25 6 7.0787 -1.9561 -9.0696 26 6 6.0044 -0.9087 -7.0886 27 8 4.8874 -1.3188 -7.3233 28 6 2.0125 -0.7447 -3.7470 29 6 1.5297 0.0005 -2.4987 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6319 1.1525 34 1 3.2342 -2.4000 4.2455 35 1 1.6761 -1.7486 -1.2494 36 1 3.9344 0.3055 -1.2742 37 1 3.9337 -1.2147 -0.3471 38 1 3.7906 -2.5238 -2.4141 39 1 5.1626 -1.3930 -2.5403 40 1 6.1175 -0.0405 -3.7625 41 1 6.0053 -1.6519 -4.5100 42 1 8.3647 0.7934 -5.5316 43 1 8.2264 -0.9562 -5.1535 44 1 9.1303 -1.1852 -7.3195 45 1 8.5105 0.4076 -7.8476 46 1 6.0685 -2.3199 -9.2572 47 1 7.4070 -1.3447 -9.9102 48 1 7.7537 -2.8037 -8.9513 49 1 1.5575 -1.7346 -3.7813 50 1 1.7334 -0.1832 -4.6385 51 1 0.4399 0.0215 -2.4871 52 1 1.9131 1.0208 -2.5116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267486662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:33 Heat of formation + Delta-G solvation = -60.864217 kcal Electronic energy + Delta-G solvation = -30261.620496 eV Core-core repulsion = 26261.049107 eV Total energy + Delta-G solvation = -4000.571389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93626 -39.75246 -37.76664 -36.49024 -35.30352 -34.07532 -32.86554 -31.25538 -30.66762 -29.84873 -28.22390 -27.20252 -25.92284 -24.96470 -23.59623 -22.67523 -21.88542 -21.02916 -19.78270 -19.47979 -18.65182 -17.39636 -17.18412 -16.80886 -16.48359 -15.85444 -15.46610 -15.15546 -14.86737 -14.09775 -14.07263 -14.00654 -13.86937 -13.83797 -13.59597 -13.38844 -12.96609 -12.89194 -12.76330 -12.54845 -12.48380 -12.34433 -12.26921 -12.02468 -11.94527 -11.69821 -11.50611 -11.27472 -11.10309 -10.91782 -10.85904 -10.67912 -10.23340 -10.17544 -10.13267 -9.82338 -9.75129 -9.54996 -9.41981 -8.95543 -8.89010 -8.38630 -6.93078 -5.75903 -3.03387 2.52088 2.76500 2.85948 3.12978 3.43066 3.48805 3.49742 4.02728 4.08709 4.33894 4.54443 4.59330 4.82392 4.85779 4.92235 4.98175 5.06738 5.10937 5.13829 5.15245 5.22050 5.30254 5.35054 5.40326 5.41829 5.48258 5.51915 5.56376 5.62971 5.74638 5.77533 5.89235 5.99546 6.02423 6.11706 6.18464 6.26763 6.29871 6.36848 6.50006 6.54306 6.66035 6.70999 6.85692 6.88060 6.98793 7.16841 7.58977 7.71613 8.11518 8.40186 8.43383 9.54459 10.13260 10.48235 11.46859 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.002310 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.890334 B =12116.235014 C =13062.969465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.232 4.232 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.089 4.089 14 C -0.122 4.122 15 C 0.106 3.894 16 N -0.612 5.612 17 C 0.512 3.488 18 O -0.522 6.522 19 C -0.124 4.124 20 C -0.107 4.107 21 H 0.115 0.885 22 C -0.130 4.130 23 C 0.105 3.895 24 N -0.634 5.634 25 C 0.095 3.905 26 C 0.517 3.483 27 O -0.497 6.497 28 C 0.115 3.885 29 C -0.127 4.127 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.897 1.431 -22.131 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.364 4.364 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.108 4.108 14 C -0.160 4.160 15 C -0.017 4.017 16 N -0.347 5.347 17 C 0.299 3.701 18 O -0.397 6.397 19 C -0.164 4.164 20 C -0.129 4.129 21 H 0.133 0.867 22 C -0.168 4.168 23 C -0.019 4.019 24 N -0.371 5.371 25 C -0.047 4.047 26 C 0.303 3.697 27 O -0.369 6.369 28 C -0.007 4.007 29 C -0.166 4.166 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.105 0.895 51 H 0.094 0.906 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.027 1.546 -22.732 25.313 hybrid contribution 0.246 0.064 1.098 1.128 sum 11.273 1.610 -21.634 24.448 Atomic orbital electron populations 1.22496 0.99582 1.00742 0.99829 1.20220 0.91552 0.95306 0.86123 0.93770 1.42423 1.78087 1.10692 1.05208 1.19227 1.36102 0.93785 0.87272 0.91369 1.24704 1.02516 0.95967 0.97908 1.69656 1.51373 1.08596 1.28681 0.86234 0.77250 0.78791 0.84197 1.21869 1.21865 1.20866 1.21361 0.94991 0.99877 0.94607 1.21888 0.96102 1.00881 0.97163 1.21857 0.97778 0.97373 0.84661 1.48105 1.07068 1.61741 1.17737 1.20357 0.88986 0.78329 0.82440 1.90726 1.74993 1.43617 1.30362 1.21566 0.93278 1.03455 0.98113 1.21729 0.95493 1.01853 0.93808 0.86705 1.22718 0.94152 1.03866 0.96084 1.22029 0.88094 0.97719 0.94027 1.48194 1.10057 1.52491 1.26386 1.21502 1.03591 0.94352 0.85219 1.20760 0.84118 0.80407 0.84371 1.90793 1.21098 1.51996 1.73050 1.21551 0.79355 1.00522 0.99272 1.22010 1.01031 0.99572 0.93955 0.93619 0.93081 0.94280 0.78356 0.93628 0.91475 0.91998 0.89051 0.91494 0.90295 0.87745 0.88869 0.88791 0.89565 0.90423 0.91203 0.90017 0.92364 0.92310 0.92002 0.89456 0.90592 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.14 37.16 0.34 -2.64 16 2 C 0.18 3.40 2.47 -67.93 -0.17 3.23 16 3 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.26 4.41 -53.43 -0.24 -17.49 16 5 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 9 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C -0.09 -1.39 1.79 -90.58 -0.16 -1.55 16 14 C -0.12 -1.82 5.22 -26.61 -0.14 -1.96 16 15 C 0.11 1.30 6.34 -3.71 -0.02 1.28 16 16 N -0.61 -8.34 2.97 -172.77 -0.51 -8.85 16 17 C 0.51 7.31 7.14 -10.99 -0.08 7.23 16 18 O -0.52 -9.36 13.11 -17.48 -0.23 -9.59 16 19 C -0.12 -1.23 3.47 -27.89 -0.10 -1.33 16 20 C -0.11 -1.01 2.57 -90.63 -0.23 -1.24 16 21 H 0.12 1.15 8.02 -51.93 -0.42 0.74 16 22 C -0.13 -0.69 6.70 -25.10 -0.17 -0.86 16 23 C 0.10 0.57 7.35 -3.12 -0.02 0.54 16 24 N -0.63 -5.76 3.33 -180.28 -0.60 -6.36 16 25 C 0.10 0.70 11.14 59.85 0.67 1.36 16 26 C 0.52 6.48 7.29 -10.86 -0.08 6.40 16 27 O -0.50 -8.62 14.51 -17.48 -0.25 -8.88 16 28 C 0.12 1.59 6.43 -3.71 -0.02 1.57 16 29 C -0.13 -1.75 5.04 -26.62 -0.13 -1.88 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 33 H 0.38 9.70 7.58 -40.82 -0.31 9.39 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.58 7.41 -51.93 -0.38 1.20 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 40 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 41 H 0.09 0.85 7.94 -51.93 -0.41 0.43 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.39 7.91 -51.93 -0.41 -0.03 16 44 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 51 H 0.08 0.98 6.36 -51.93 -0.33 0.65 16 52 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -35.24 401.50 -9.75 -44.99 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -9.10 Total: 6.60 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.57 Total: 3.21 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.63 Total: -59.46 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.48 Total: -18.47 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.24 -9.75 -44.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267486662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.873 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds