Wall clock time and date at job start Tue Mar 31 2020 21:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47081 * 2 1 4 4 N 1.46497 * 109.47758 * 120.00509 * 2 1 3 5 5 C 1.36937 * 119.99917 * 275.00640 * 4 2 1 6 6 H 1.08001 * 119.99860 * 359.97438 * 5 4 2 7 7 C 1.38808 * 120.00030 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00227 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00149 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47026 * 89.99842 * 9 7 5 11 11 H 1.48494 * 109.47475 * 210.00013 * 9 7 5 12 12 H 1.48502 * 109.46749 * 330.00242 * 9 7 5 13 13 C 1.53007 * 109.46819 * 240.00628 * 2 1 3 14 14 C 1.53042 * 109.46027 * 64.99753 * 13 2 1 15 15 C 1.53195 * 109.31046 * 178.61498 * 14 13 2 16 16 N 1.46925 * 108.77662 * 54.63235 * 15 14 13 17 17 C 1.34777 * 120.62933 * 126.37171 * 16 15 14 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99928 * 180.27723 * 17 16 15 20 20 C 1.52996 * 109.47159 * 179.72352 * 19 17 16 21 21 H 1.09007 * 109.29706 * 304.99850 * 20 19 17 22 22 C 1.52914 * 109.30365 * 185.41609 * 20 19 17 23 23 C 1.53272 * 108.71650 * 188.73897 * 22 20 19 24 24 C 1.53064 * 108.24835 * 67.81184 * 23 22 20 25 25 C 1.50179 * 109.89038 * 311.03612 * 24 23 22 26 26 O 1.21283 * 118.24397 * 197.59893 * 25 24 23 27 27 N 1.33343 * 123.51028 * 17.58465 * 25 24 23 28 28 C 1.46931 * 118.73924 * 306.64212 * 16 15 14 29 29 C 1.52760 * 109.00543 * 53.31068 * 28 16 15 30 30 H 1.09000 * 109.47317 * 60.00030 * 1 2 3 31 31 H 1.09008 * 109.46692 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47013 * 299.99120 * 1 2 3 33 33 H 0.96998 * 120.00076 * 94.99633 * 4 2 1 34 34 H 0.97000 * 120.00194 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.45883 * 184.97098 * 13 2 1 36 36 H 1.08994 * 109.49700 * 58.66458 * 14 13 2 37 37 H 1.08997 * 109.52427 * 298.57951 * 14 13 2 38 38 H 1.09005 * 109.58240 * 294.84926 * 15 14 13 39 39 H 1.08991 * 109.58817 * 174.42193 * 15 14 13 40 40 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 41 41 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 42 42 H 1.09003 * 109.59996 * 308.69332 * 22 20 19 43 43 H 1.08998 * 109.60593 * 69.17641 * 22 20 19 44 44 H 1.09001 * 109.81212 * 308.10125 * 23 22 20 45 45 H 1.08999 * 109.70850 * 187.46282 * 23 22 20 46 46 H 1.08995 * 109.40457 * 190.90697 * 24 23 22 47 47 H 1.09005 * 109.33022 * 71.11802 * 24 23 22 48 48 H 0.97001 * 117.94616 * 177.80129 * 27 25 24 49 49 H 1.08997 * 109.58191 * 173.14261 * 28 16 15 50 50 H 1.09000 * 109.58404 * 293.56973 * 28 16 15 51 51 H 1.09004 * 109.56227 * 185.55021 * 29 28 16 52 52 H 1.08994 * 109.36282 * 65.49817 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 2.1492 -0.0077 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6115 -0.6622 3.5091 8 7 2.9238 -1.9394 3.4501 9 14 2.7906 0.2697 5.1182 10 1 1.5228 0.1793 5.8862 11 1 3.8948 -0.3241 5.9139 12 1 3.0963 1.6947 4.8334 13 6 2.0400 -0.7212 -1.2494 14 6 1.6349 0.0696 -2.4955 15 6 2.1767 -0.6370 -3.7422 16 7 1.7129 -2.0311 -3.7348 17 6 1.0630 -2.5442 -4.7983 18 8 0.8557 -1.8534 -5.7733 19 6 0.5880 -3.9741 -4.7730 20 6 -0.1195 -4.2999 -6.0899 21 1 -0.9185 -3.5776 -6.2579 22 6 -0.7172 -5.7050 -6.0085 23 6 -1.2285 -6.1031 -7.3975 24 6 -0.0207 -6.2720 -8.3226 25 6 0.8854 -5.0804 -8.2026 26 8 1.7022 -4.8899 -9.0786 27 7 0.8397 -4.2204 -7.1846 28 6 1.9656 -2.8535 -2.5437 29 6 1.4310 -2.1237 -1.3128 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2492 -1.6318 1.1524 34 1 3.2473 -2.3967 4.2421 35 1 3.1263 -0.7988 -1.2058 36 1 2.0496 1.0759 -2.4386 37 1 0.5479 0.1267 -2.5533 38 1 3.2665 -0.6144 -3.7303 39 1 1.8085 -0.1341 -4.6363 40 1 1.4425 -4.6387 -4.6456 41 1 -0.1061 -4.1118 -3.9440 42 1 0.0478 -6.4094 -5.6818 43 1 -1.5471 -5.7090 -5.3020 44 1 -1.8833 -5.3239 -7.7875 45 1 -1.7752 -7.0439 -7.3323 46 1 -0.3638 -6.3637 -9.3530 47 1 0.5259 -7.1723 -8.0415 48 1 1.4850 -3.4963 -7.1719 49 1 1.4580 -3.8124 -2.6475 50 1 3.0378 -3.0153 -2.4323 51 1 1.7006 -2.6784 -0.4139 52 1 0.3460 -2.0464 -1.3814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267489481.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:50 Heat of formation + Delta-G solvation = -104.050702 kcal Electronic energy + Delta-G solvation = -30115.300011 eV Core-core repulsion = 26112.855916 eV Total energy + Delta-G solvation = -4002.444095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74916 -40.90382 -39.35311 -37.70872 -36.80993 -34.67921 -34.10945 -32.95242 -32.03644 -31.78764 -29.91516 -28.59475 -26.64315 -25.61366 -24.50170 -24.11361 -23.41320 -22.51106 -20.71590 -20.02928 -19.59698 -19.21278 -18.39372 -17.80392 -17.30338 -17.03914 -16.67666 -16.27144 -16.25294 -15.91152 -15.46199 -15.32928 -15.17170 -15.03423 -14.60349 -14.49833 -14.38524 -14.23914 -14.03855 -13.77258 -13.68715 -13.10134 -13.01042 -12.92372 -12.82667 -12.77852 -12.60955 -12.55430 -12.19860 -12.14326 -11.98816 -11.86497 -11.78781 -11.72867 -11.58415 -11.25827 -11.11032 -10.90836 -10.82853 -10.66567 -10.08100 -9.64160 -8.94790 -7.91424 -5.17259 1.48422 1.48504 1.56684 1.59908 1.63518 2.01877 2.36381 2.58072 3.41469 3.42430 3.59206 3.69741 3.79098 3.83638 3.93007 3.97056 4.02476 4.16440 4.22994 4.28624 4.29623 4.37650 4.42336 4.56996 4.58337 4.65639 4.67571 4.72925 4.77166 4.83517 4.89565 4.92746 4.95929 5.01172 5.03507 5.10627 5.12871 5.14763 5.15159 5.28352 5.37118 5.39753 5.44137 5.55136 5.62152 5.73460 5.77648 6.32615 6.40075 6.47856 7.13164 7.22132 7.39227 8.17755 8.41054 9.31872 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024568 B = 0.002095 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.440313 B =13363.090416 C =13810.991360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.033 0.967 4 N -0.734 5.734 5 C -0.234 4.234 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.274 1.274 13 C -0.081 4.081 14 C -0.116 4.116 15 C 0.113 3.887 16 N -0.605 5.605 17 C 0.507 3.493 18 O -0.584 6.584 19 C -0.151 4.151 20 C 0.153 3.847 21 H 0.074 0.926 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.131 4.131 25 C 0.508 3.492 26 O -0.623 6.623 27 N -0.707 5.707 28 C 0.110 3.890 29 C -0.123 4.123 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.142 0.858 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.391 0.609 49 H 0.116 0.884 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 -9.896 -19.030 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.051 0.949 4 N -0.375 5.375 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.267 4.267 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.217 1.217 11 H -0.224 1.224 12 H -0.199 1.199 13 C -0.101 4.101 14 C -0.155 4.155 15 C -0.010 4.010 16 N -0.337 5.337 17 C 0.297 3.703 18 O -0.465 6.465 19 C -0.191 4.191 20 C 0.048 3.952 21 H 0.092 0.908 22 C -0.167 4.167 23 C -0.156 4.156 24 C -0.170 4.170 25 C 0.297 3.703 26 O -0.507 6.507 27 N -0.357 5.357 28 C -0.012 4.012 29 C -0.161 4.161 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.134 0.866 48 H 0.227 0.773 49 H 0.134 0.866 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.572 -9.461 -19.828 23.964 hybrid contribution 0.867 0.949 1.346 1.861 sum -8.705 -8.512 -18.482 22.132 Atomic orbital electron populations 1.22368 0.98035 1.01104 0.99989 1.20423 0.92665 0.94614 0.85977 0.94882 1.42622 1.78355 1.10487 1.06013 1.19569 1.34458 0.93993 0.88604 0.91301 1.25414 1.03352 0.96895 1.01000 1.69776 1.52872 1.09906 1.29214 0.85271 0.76799 0.78030 0.80473 1.21687 1.22353 1.19897 1.21246 0.99551 0.95592 0.93666 1.21879 1.01618 0.99124 0.92848 1.21559 0.99049 0.81609 0.98756 1.48241 1.56277 1.12843 1.16313 1.21268 0.76709 0.90622 0.81685 1.90689 1.58400 1.62959 1.34405 1.22266 1.04232 0.92050 1.00507 1.20948 0.90568 0.99658 0.84010 0.90799 1.22010 1.02584 0.93296 0.98775 1.21666 0.96081 1.04062 0.93820 1.21707 0.96582 0.95164 1.03588 1.21041 0.84094 0.84983 0.80203 1.90726 1.42032 1.76640 1.41292 1.45869 1.36082 1.29863 1.23840 1.21843 1.01861 0.94620 0.82900 1.21829 1.01116 0.95553 0.97633 0.91674 0.92935 0.95392 0.79095 0.94155 0.92372 0.90365 0.91202 0.91223 0.89960 0.86406 0.83992 0.89401 0.86909 0.91460 0.87617 0.88169 0.86622 0.77344 0.86554 0.90958 0.91668 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 8.76 71.98 0.63 -4.40 16 2 C 0.17 6.16 2.67 44.99 0.12 6.28 16 3 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 4 N -0.73 -34.40 5.06 -322.94 -1.63 -36.03 16 5 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 6 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 8 N -0.97 -56.83 13.06 21.65 0.28 -56.55 16 9 Si 0.96 45.22 29.55 68.60 2.03 47.24 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 C -0.08 -2.25 2.08 -10.76 -0.02 -2.27 16 14 C -0.12 -2.64 5.08 30.67 0.16 -2.49 16 15 C 0.11 2.44 6.43 86.36 0.56 3.00 16 16 N -0.60 -11.74 2.98 -819.72 -2.44 -14.19 16 17 C 0.51 9.92 7.34 87.66 0.64 10.56 16 18 O -0.58 -15.77 13.94 -3.04 -0.04 -15.81 16 19 C -0.15 -1.60 3.69 29.85 0.11 -1.49 16 20 C 0.15 1.85 2.65 45.10 0.12 1.97 16 21 H 0.07 1.08 7.95 -2.38 -0.02 1.06 16 22 C -0.13 -0.68 5.28 30.66 0.16 -0.52 16 23 C -0.12 -0.73 6.04 30.71 0.19 -0.54 16 24 C -0.13 -1.53 6.02 29.71 0.18 -1.36 16 25 C 0.51 11.10 7.71 87.72 0.68 11.78 16 26 O -0.62 -20.31 17.78 -3.04 -0.05 -20.36 16 27 N -0.71 -13.76 5.00 -446.65 -2.24 -15.99 16 28 C 0.11 1.88 6.32 86.22 0.54 2.42 16 29 C -0.12 -2.91 4.70 30.53 0.14 -2.77 16 30 H 0.06 1.73 6.60 -2.39 -0.02 1.72 16 31 H 0.05 1.66 6.38 -2.38 -0.02 1.64 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.38 18.54 6.35 -92.71 -0.59 17.95 16 34 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 1.59 6.64 -2.39 -0.02 1.58 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 40 H 0.12 0.95 7.96 -2.38 -0.02 0.93 16 41 H 0.14 0.73 7.68 -2.39 -0.02 0.72 16 42 H 0.09 0.34 8.10 -2.39 -0.02 0.32 16 43 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.07 0.51 8.13 -2.39 -0.02 0.49 16 45 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.39 9.60 6.90 -92.71 -0.64 8.96 16 49 H 0.12 1.22 5.93 -2.39 -0.01 1.21 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.06 1.86 6.74 -2.38 -0.02 1.85 16 52 H 0.07 1.68 6.43 -2.39 -0.02 1.66 16 Total: -1.00 -75.69 395.19 1.11 -74.59 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.30 Total: 32.30 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.50 Total: 4.80 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -6.03 Total: -122.76 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.10 Total: -36.17 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.69 1.11 -74.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489481.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.465 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds