Wall clock time and date at job start Tue Mar 31 2020 21:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47138 * 2 1 4 4 N 1.46497 * 109.47106 * 120.00664 * 2 1 3 5 5 C 1.36944 * 119.99706 * 274.99411 * 4 2 1 6 6 H 1.07996 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00508 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99743 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46864 * 90.00856 * 9 7 5 11 11 H 1.48500 * 109.46995 * 210.00196 * 9 7 5 12 12 H 1.48501 * 109.47244 * 330.00497 * 9 7 5 13 13 C 1.53003 * 109.46881 * 240.00429 * 2 1 3 14 14 C 1.53034 * 109.46297 * 64.99820 * 13 2 1 15 15 C 1.53188 * 109.31490 * 178.61268 * 14 13 2 16 16 N 1.46926 * 108.89313 * 54.56820 * 15 14 13 17 17 C 1.34774 * 120.63826 * 126.46326 * 16 15 14 18 18 O 1.21273 * 120.00727 * 174.95407 * 17 16 15 19 19 C 1.50710 * 119.99525 * 354.96090 * 17 16 15 20 20 H 1.08997 * 109.67059 * 324.71801 * 19 17 16 21 21 C 1.53337 * 109.67546 * 204.21506 * 19 17 16 22 22 C 1.52919 * 108.67166 * 172.75941 * 21 19 17 23 23 N 1.45754 * 110.50709 * 50.72312 * 22 21 19 24 24 C 1.46491 * 117.94590 * 160.93336 * 23 22 21 25 25 C 1.33354 * 124.10354 * 340.92237 * 23 22 21 26 26 O 1.21283 * 118.24495 * 182.21824 * 25 23 22 27 27 C 1.50174 * 123.50923 * 2.23596 * 25 23 22 28 28 C 1.46971 * 118.71116 * 306.64086 * 16 15 14 29 29 C 1.53045 * 109.45822 * 304.93244 * 13 2 1 30 30 H 1.09004 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46776 * 299.99538 * 1 2 3 32 32 H 1.09003 * 109.47557 * 59.99418 * 1 2 3 33 33 H 0.96998 * 120.00403 * 94.99377 * 4 2 1 34 34 H 0.96996 * 120.00774 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46256 * 184.97522 * 13 2 1 36 36 H 1.09003 * 109.49794 * 58.66419 * 14 13 2 37 37 H 1.09002 * 109.52654 * 298.58442 * 14 13 2 38 38 H 1.09006 * 109.58705 * 174.42083 * 15 14 13 39 39 H 1.08997 * 109.58910 * 294.70758 * 15 14 13 40 40 H 1.09006 * 109.60412 * 292.49639 * 21 19 17 41 41 H 1.09007 * 109.60383 * 52.97857 * 21 19 17 42 42 H 1.09004 * 109.28103 * 290.41747 * 22 21 19 43 43 H 1.08997 * 109.13800 * 170.94574 * 22 21 19 44 44 H 1.09002 * 109.47310 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.47856 * 299.98402 * 24 23 22 46 46 H 1.09004 * 109.47306 * 59.98534 * 24 23 22 47 47 H 1.09007 * 109.40159 * 222.29081 * 27 25 23 48 48 H 1.09001 * 109.33203 * 102.50903 * 27 25 23 49 49 H 1.08993 * 109.46654 * 293.56963 * 28 16 15 50 50 H 1.09008 * 109.70681 * 173.28458 * 28 16 15 51 51 H 1.09007 * 109.49515 * 301.33323 * 29 13 2 52 52 H 1.08995 * 109.50123 * 61.43474 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0401 2.4244 7 6 2.6114 -0.6622 3.5092 8 7 2.9243 -1.9392 3.4501 9 14 2.7892 0.2695 5.1185 10 1 1.5212 0.1781 5.8861 11 1 3.8935 -0.3239 5.9146 12 1 3.0943 1.6948 4.8343 13 6 2.0399 -0.7212 -1.2493 14 6 1.6349 0.0694 -2.4955 15 6 2.1768 -0.6371 -3.7420 16 7 1.7157 -2.0321 -3.7365 17 6 1.0685 -2.5458 -4.8012 18 8 0.7739 -3.7220 -4.8224 19 6 0.7110 -1.6585 -5.9658 20 1 0.4538 -0.6632 -5.6033 21 6 -0.4807 -2.2560 -6.7234 22 6 -0.9387 -1.2542 -7.7840 23 7 0.1926 -0.8091 -8.5882 24 6 -0.0883 -0.2012 -9.8911 25 6 1.4671 -0.9204 -8.2121 26 8 2.3234 -0.4770 -8.9477 27 6 1.8989 -1.5658 -6.9267 28 6 1.9704 -2.8552 -2.5458 29 6 1.4308 -2.1238 -1.3127 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2489 -1.6319 1.1525 34 1 3.2476 -2.3966 4.2420 35 1 3.1263 -0.7990 -1.2058 36 1 2.0497 1.0758 -2.4386 37 1 0.5479 0.1266 -2.5533 38 1 1.8085 -0.1341 -4.6363 39 1 3.2664 -0.6124 -3.7315 40 1 -0.1787 -3.1860 -7.2052 41 1 -1.2965 -2.4505 -6.0270 42 1 -1.3929 -0.3932 -7.2936 43 1 -1.6754 -1.7304 -8.4309 44 1 0.8494 0.0790 -10.3710 45 1 -0.6184 -0.9169 -10.5194 46 1 -0.7048 0.6870 -9.7524 47 1 2.6888 -0.9696 -6.4697 48 1 2.2755 -2.5674 -7.1345 49 1 3.0432 -3.0135 -2.4364 50 1 1.4677 -3.8169 -2.6493 51 1 1.7004 -2.6784 -0.4139 52 1 0.3458 -2.0465 -1.3814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267489708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:57 Heat of formation + Delta-G solvation = -63.846490 kcal Electronic energy + Delta-G solvation = -30484.437232 eV Core-core repulsion = 26483.736523 eV Total energy + Delta-G solvation = -4000.700710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.25925 -40.06967 -38.22005 -36.68683 -35.49140 -34.53115 -32.90939 -31.16315 -30.76649 -30.08646 -28.28390 -27.75436 -25.64280 -24.89210 -23.85512 -23.77677 -22.56927 -21.41957 -19.62547 -19.07402 -18.52546 -17.56249 -17.10881 -16.98376 -16.83313 -16.29382 -15.64100 -15.32938 -14.94063 -14.75405 -14.44614 -14.27052 -14.08777 -13.77881 -13.73511 -13.66978 -13.25089 -13.05552 -12.95931 -12.71394 -12.63764 -12.22204 -12.21427 -12.17916 -11.97979 -11.62297 -11.47577 -11.41635 -11.24190 -11.09382 -10.86005 -10.63705 -10.49888 -10.34430 -10.29302 -10.11309 -9.72369 -9.71097 -9.53697 -9.17247 -8.92235 -8.67317 -6.96401 -5.77659 -3.05822 2.22522 2.40645 2.59374 2.82782 3.42125 3.47464 3.49022 3.96946 4.14288 4.16786 4.30652 4.54225 4.58179 4.70645 4.80302 4.83719 4.94547 4.98451 5.02767 5.06767 5.11033 5.17764 5.22851 5.30588 5.36851 5.42054 5.47656 5.51928 5.55506 5.59374 5.71008 5.75983 5.83265 5.92040 5.92145 5.93379 6.08855 6.15943 6.24551 6.25933 6.44130 6.52450 6.65114 6.73895 6.90418 6.98655 7.12732 7.29578 7.69231 7.74259 8.01034 8.41576 9.52605 10.11122 10.45295 11.45119 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.002207 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.526488 B =12686.567492 C =12921.355774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.091 4.091 14 C -0.129 4.129 15 C 0.102 3.898 16 N -0.603 5.603 17 C 0.521 3.479 18 O -0.541 6.541 19 C -0.113 4.113 20 H 0.103 0.897 21 C -0.117 4.117 22 C 0.114 3.886 23 N -0.608 5.608 24 C 0.069 3.931 25 C 0.522 3.478 26 O -0.552 6.552 27 C -0.123 4.123 28 C 0.110 3.890 29 C -0.127 4.127 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.035 0.965 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.089 0.911 51 H 0.085 0.915 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 2.321 -25.005 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.110 4.110 14 C -0.168 4.168 15 C -0.020 4.020 16 N -0.336 5.336 17 C 0.308 3.692 18 O -0.418 6.418 19 C -0.135 4.135 20 H 0.121 0.879 21 C -0.155 4.155 22 C -0.009 4.009 23 N -0.341 5.341 24 C -0.074 4.074 25 C 0.311 3.689 26 O -0.431 6.431 27 C -0.163 4.163 28 C -0.011 4.011 29 C -0.165 4.165 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.103 0.897 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.412 2.034 -25.217 26.362 hybrid contribution 0.038 0.251 1.173 1.200 sum -7.374 2.285 -24.043 25.252 Atomic orbital electron populations 1.22538 0.99643 1.00867 0.99619 1.20188 0.91705 0.95138 0.86121 0.93675 1.42463 1.78130 1.10723 1.05319 1.19231 1.36297 0.93832 0.87407 0.91306 1.24723 1.02320 0.95983 0.98012 1.69644 1.51067 1.08653 1.28843 0.86221 0.77272 0.78792 0.84088 1.21816 1.21827 1.20831 1.21405 1.00528 0.94590 0.94481 1.22008 1.01627 0.99203 0.93949 1.21898 0.99777 0.80987 0.99368 1.48178 1.56507 1.12911 1.16007 1.20291 0.77475 0.88178 0.83245 1.90700 1.54359 1.16545 1.80209 1.21482 0.96751 1.00872 0.94366 0.87899 1.21746 0.97734 0.98700 0.97319 1.21471 0.88111 0.98018 0.93326 1.47220 1.06110 1.60769 1.20045 1.21789 1.03329 0.97879 0.84411 1.19976 0.82066 0.78896 0.87989 1.90722 1.49587 1.48812 1.53930 1.21635 0.98333 1.03965 0.92358 1.21738 1.00961 0.94821 0.83615 1.21993 1.00846 0.96423 0.97209 0.93239 0.93170 0.94596 0.78225 0.93547 0.90903 0.90596 0.91208 0.90086 0.90899 0.89738 0.88893 0.91168 0.89997 0.88974 0.92114 0.92060 0.87417 0.87432 0.91423 0.89264 0.89704 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.76 37.16 0.33 -2.50 16 2 C 0.18 3.26 2.67 -67.93 -0.18 3.08 16 3 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -17.25 5.06 -53.43 -0.27 -17.52 16 5 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 9 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C -0.09 -1.31 2.08 -90.58 -0.19 -1.50 16 14 C -0.13 -1.39 5.08 -26.62 -0.14 -1.53 16 15 C 0.10 0.93 5.99 -3.71 -0.02 0.91 16 16 N -0.60 -6.70 2.98 -172.73 -0.51 -7.21 16 17 C 0.52 5.87 6.79 -10.98 -0.07 5.80 16 18 O -0.54 -7.97 15.69 5.56 0.09 -7.88 16 19 C -0.11 -0.89 1.71 -91.56 -0.16 -1.05 16 20 H 0.10 0.67 6.50 -51.93 -0.34 0.33 16 21 C -0.12 -0.80 4.72 -26.60 -0.13 -0.92 16 22 C 0.11 0.59 6.40 -4.49 -0.03 0.56 16 23 N -0.61 -4.58 3.21 -182.86 -0.59 -5.17 16 24 C 0.07 0.43 10.48 59.84 0.63 1.05 16 25 C 0.52 5.16 7.47 -11.87 -0.09 5.07 16 26 O -0.55 -7.47 15.95 5.56 0.09 -7.38 16 27 C -0.12 -1.02 5.21 -28.10 -0.15 -1.17 16 28 C 0.11 1.42 6.41 -3.69 -0.02 1.39 16 29 C -0.13 -1.82 4.71 -26.61 -0.13 -1.94 16 30 H 0.05 0.86 6.38 -51.93 -0.33 0.52 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.50 6.60 -51.93 -0.34 0.16 16 33 H 0.38 9.66 6.35 -40.82 -0.26 9.40 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 38 H 0.08 0.56 4.99 -51.93 -0.26 0.30 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 44 H 0.09 0.75 6.59 -51.93 -0.34 0.41 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.11 0.83 7.36 -51.92 -0.38 0.45 16 48 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 1.23 7.05 -51.92 -0.37 0.87 16 51 H 0.08 1.42 6.74 -51.93 -0.35 1.07 16 52 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -33.80 394.13 -8.83 -42.63 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.68 Total: 6.23 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.59 Total: 0.22 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.65 Total: -56.87 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.18 Total: -15.26 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.80 -8.83 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.219 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds