Wall clock time and date at job start Tue Mar 31 2020 21:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47138 * 2 1 4 4 N 1.46497 * 109.47106 * 120.00664 * 2 1 3 5 5 C 1.36944 * 119.99706 * 274.99411 * 4 2 1 6 6 H 1.07996 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00508 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99743 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46864 * 90.00856 * 9 7 5 11 11 H 1.48500 * 109.46995 * 210.00196 * 9 7 5 12 12 H 1.48501 * 109.47244 * 330.00497 * 9 7 5 13 13 C 1.53003 * 109.46881 * 240.00429 * 2 1 3 14 14 C 1.53034 * 109.46297 * 64.99820 * 13 2 1 15 15 C 1.53188 * 109.31490 * 178.61268 * 14 13 2 16 16 N 1.46926 * 108.89313 * 54.56820 * 15 14 13 17 17 C 1.34774 * 120.63826 * 126.46326 * 16 15 14 18 18 O 1.21273 * 120.00727 * 174.95407 * 17 16 15 19 19 C 1.50710 * 119.99525 * 354.96090 * 17 16 15 20 20 H 1.08997 * 109.67059 * 324.71801 * 19 17 16 21 21 C 1.53337 * 109.67546 * 204.21506 * 19 17 16 22 22 C 1.52919 * 108.67166 * 172.75941 * 21 19 17 23 23 N 1.45754 * 110.50709 * 50.72312 * 22 21 19 24 24 C 1.46491 * 117.94590 * 160.93336 * 23 22 21 25 25 C 1.33354 * 124.10354 * 340.92237 * 23 22 21 26 26 O 1.21283 * 118.24495 * 182.21824 * 25 23 22 27 27 C 1.50174 * 123.50923 * 2.23596 * 25 23 22 28 28 C 1.46971 * 118.71116 * 306.64086 * 16 15 14 29 29 C 1.53045 * 109.45822 * 304.93244 * 13 2 1 30 30 H 1.09004 * 109.47138 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46776 * 299.99538 * 1 2 3 32 32 H 1.09003 * 109.47557 * 59.99418 * 1 2 3 33 33 H 0.96998 * 120.00403 * 94.99377 * 4 2 1 34 34 H 0.96996 * 120.00774 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46256 * 184.97522 * 13 2 1 36 36 H 1.09003 * 109.49794 * 58.66419 * 14 13 2 37 37 H 1.09002 * 109.52654 * 298.58442 * 14 13 2 38 38 H 1.09006 * 109.58705 * 174.42083 * 15 14 13 39 39 H 1.08997 * 109.58910 * 294.70758 * 15 14 13 40 40 H 1.09006 * 109.60412 * 292.49639 * 21 19 17 41 41 H 1.09007 * 109.60383 * 52.97857 * 21 19 17 42 42 H 1.09004 * 109.28103 * 290.41747 * 22 21 19 43 43 H 1.08997 * 109.13800 * 170.94574 * 22 21 19 44 44 H 1.09002 * 109.47310 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.47856 * 299.98402 * 24 23 22 46 46 H 1.09004 * 109.47306 * 59.98534 * 24 23 22 47 47 H 1.09007 * 109.40159 * 222.29081 * 27 25 23 48 48 H 1.09001 * 109.33203 * 102.50903 * 27 25 23 49 49 H 1.08993 * 109.46654 * 293.56963 * 28 16 15 50 50 H 1.09008 * 109.70681 * 173.28458 * 28 16 15 51 51 H 1.09007 * 109.49515 * 301.33323 * 29 13 2 52 52 H 1.08995 * 109.50123 * 61.43474 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8920 1.0401 2.4244 7 6 2.6114 -0.6622 3.5092 8 7 2.9243 -1.9392 3.4501 9 14 2.7892 0.2695 5.1185 10 1 1.5212 0.1781 5.8861 11 1 3.8935 -0.3239 5.9146 12 1 3.0943 1.6948 4.8343 13 6 2.0399 -0.7212 -1.2493 14 6 1.6349 0.0694 -2.4955 15 6 2.1768 -0.6371 -3.7420 16 7 1.7157 -2.0321 -3.7365 17 6 1.0685 -2.5458 -4.8012 18 8 0.7739 -3.7220 -4.8224 19 6 0.7110 -1.6585 -5.9658 20 1 0.4538 -0.6632 -5.6033 21 6 -0.4807 -2.2560 -6.7234 22 6 -0.9387 -1.2542 -7.7840 23 7 0.1926 -0.8091 -8.5882 24 6 -0.0883 -0.2012 -9.8911 25 6 1.4671 -0.9204 -8.2121 26 8 2.3234 -0.4770 -8.9477 27 6 1.8989 -1.5658 -6.9267 28 6 1.9704 -2.8552 -2.5458 29 6 1.4308 -2.1238 -1.3127 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.2489 -1.6319 1.1525 34 1 3.2476 -2.3966 4.2420 35 1 3.1263 -0.7990 -1.2058 36 1 2.0497 1.0758 -2.4386 37 1 0.5479 0.1266 -2.5533 38 1 1.8085 -0.1341 -4.6363 39 1 3.2664 -0.6124 -3.7315 40 1 -0.1787 -3.1860 -7.2052 41 1 -1.2965 -2.4505 -6.0270 42 1 -1.3929 -0.3932 -7.2936 43 1 -1.6754 -1.7304 -8.4309 44 1 0.8494 0.0790 -10.3710 45 1 -0.6184 -0.9169 -10.5194 46 1 -0.7048 0.6870 -9.7524 47 1 2.6888 -0.9696 -6.4697 48 1 2.2755 -2.5674 -7.1345 49 1 3.0432 -3.0135 -2.4364 50 1 1.4677 -3.8169 -2.6493 51 1 1.7004 -2.6784 -0.4139 52 1 0.3458 -2.0465 -1.3814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267489708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:56 Heat of formation + Delta-G solvation = -85.869739 kcal Electronic energy + Delta-G solvation = -30485.392232 eV Core-core repulsion = 26483.736523 eV Total energy + Delta-G solvation = -4001.655709 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.00890 -40.93865 -39.35308 -37.42669 -36.84636 -35.23980 -34.56544 -32.31346 -32.11348 -30.74646 -29.84421 -28.42315 -26.74460 -25.83739 -25.35323 -24.62024 -23.51354 -22.59523 -20.68057 -19.71089 -19.63633 -19.22151 -18.23947 -17.64293 -17.53775 -17.03427 -16.69229 -16.40214 -16.22697 -15.87831 -15.44334 -15.40707 -15.16415 -15.05794 -14.84022 -14.37098 -14.23253 -14.22388 -14.07336 -13.63278 -13.55736 -13.24754 -13.05223 -12.95737 -12.88180 -12.80156 -12.77910 -12.66014 -12.58437 -12.14345 -12.07070 -12.02886 -11.87922 -11.72059 -11.55598 -11.37199 -11.16620 -11.05919 -10.86428 -10.52224 -9.73854 -9.64913 -8.95307 -7.91231 -5.17831 1.47555 1.47925 1.48464 1.56672 1.57349 1.95011 2.03696 2.58069 3.26076 3.42362 3.56161 3.60537 3.67341 3.76918 3.85963 3.94247 4.06661 4.08926 4.20512 4.27958 4.36684 4.38294 4.45349 4.49678 4.55935 4.58076 4.66802 4.67520 4.72429 4.75083 4.79413 4.85868 4.91454 4.96144 4.97247 5.01061 5.05577 5.11083 5.16820 5.20000 5.27186 5.37009 5.39946 5.47037 5.54645 5.63235 5.74821 6.32197 6.37705 6.42569 7.06901 7.12375 7.38081 8.18385 8.39205 9.32380 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.002207 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.526488 B =12686.567492 C =12921.355774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.043 0.957 4 N -0.738 5.738 5 C -0.232 4.232 6 H 0.074 0.926 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.967 3.033 10 H -0.291 1.291 11 H -0.299 1.299 12 H -0.269 1.269 13 C -0.081 4.081 14 C -0.122 4.122 15 C 0.103 3.897 16 N -0.603 5.603 17 C 0.520 3.480 18 O -0.580 6.580 19 C -0.102 4.102 20 H 0.128 0.872 21 C -0.115 4.115 22 C 0.115 3.885 23 N -0.605 5.605 24 C 0.065 3.935 25 C 0.518 3.482 26 O -0.597 6.597 27 C -0.117 4.117 28 C 0.118 3.882 29 C -0.116 4.116 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.372 0.628 34 H 0.248 0.752 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.067 0.933 50 H 0.076 0.924 51 H 0.052 0.948 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.288 4.505 -26.778 28.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.061 0.939 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.092 0.908 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.797 3.203 10 H -0.218 1.218 11 H -0.225 1.225 12 H -0.194 1.194 13 C -0.101 4.101 14 C -0.160 4.160 15 C -0.019 4.019 16 N -0.335 5.335 17 C 0.309 3.691 18 O -0.460 6.460 19 C -0.123 4.123 20 H 0.146 0.854 21 C -0.154 4.154 22 C -0.006 4.006 23 N -0.336 5.336 24 C -0.077 4.077 25 C 0.308 3.692 26 O -0.479 6.479 27 C -0.157 4.157 28 C -0.005 4.005 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.205 0.795 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.134 0.866 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.071 0.929 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.014 4.274 -27.025 28.807 hybrid contribution 0.459 -0.432 1.658 1.773 sum -8.556 3.842 -25.367 27.045 Atomic orbital electron populations 1.22381 0.98150 1.00620 1.00412 1.20474 0.92588 0.94890 0.85750 0.93883 1.42714 1.78350 1.10441 1.06342 1.19615 1.34169 0.94092 0.88499 0.90826 1.25489 1.03495 0.96876 1.01284 1.69802 1.53043 1.10166 1.29198 0.85223 0.76689 0.78143 0.80237 1.21802 1.22540 1.19416 1.21267 0.99504 0.94640 0.94668 1.21967 1.02312 0.99434 0.92296 1.22069 1.00360 0.79620 0.99842 1.48240 1.56338 1.13598 1.15286 1.20880 0.76467 0.88033 0.83741 1.90688 1.55791 1.18483 1.81008 1.21478 0.96898 1.01200 0.92753 0.85428 1.21735 0.97360 0.98565 0.97692 1.21645 0.87403 0.98522 0.93069 1.47368 1.05974 1.59720 1.20567 1.21894 1.02629 0.99206 0.83944 1.20160 0.82495 0.78594 0.87996 1.90707 1.50970 1.50985 1.55257 1.21570 0.98703 1.03496 0.91963 1.21487 1.00636 0.94467 0.83929 1.21832 1.00704 0.96331 0.96605 0.94007 0.95370 0.90717 0.79484 0.94275 0.92278 0.88906 0.90317 0.86833 0.90205 0.91282 0.88445 0.88905 0.87900 0.91333 0.90358 0.89992 0.86598 0.88341 0.91444 0.90574 0.92912 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 8.76 71.98 0.63 -4.43 16 2 C 0.17 6.11 2.67 44.99 0.12 6.23 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 N -0.74 -35.65 5.06 -322.95 -1.63 -37.28 16 5 C -0.23 -12.58 9.93 84.03 0.83 -11.75 16 6 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 7 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 8 N -0.97 -59.20 13.06 21.65 0.28 -58.91 16 9 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 C -0.08 -2.26 2.08 -10.77 -0.02 -2.28 16 14 C -0.12 -2.20 5.08 30.67 0.16 -2.05 16 15 C 0.10 1.52 5.99 86.36 0.52 2.04 16 16 N -0.60 -12.23 2.98 -818.80 -2.44 -14.67 16 17 C 0.52 10.80 6.79 87.66 0.60 11.40 16 18 O -0.58 -16.80 15.69 -3.01 -0.05 -16.84 16 19 C -0.10 -1.31 1.71 -11.40 -0.02 -1.33 16 20 H 0.13 1.04 6.50 -2.39 -0.02 1.02 16 21 C -0.12 -1.26 4.72 30.68 0.14 -1.12 16 22 C 0.12 0.75 6.40 86.49 0.55 1.31 16 23 N -0.60 -7.46 3.21 -851.63 -2.73 -10.20 16 24 C 0.07 0.66 10.48 127.77 1.34 2.00 16 25 C 0.52 9.37 7.47 87.71 0.66 10.03 16 26 O -0.60 -15.83 15.95 -3.04 -0.05 -15.88 16 27 C -0.12 -1.72 5.21 29.71 0.15 -1.57 16 28 C 0.12 3.00 6.41 86.35 0.55 3.55 16 29 C -0.12 -3.35 4.71 30.67 0.14 -3.20 16 30 H 0.04 1.41 6.38 -2.38 -0.02 1.39 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.83 6.60 -2.39 -0.02 1.82 16 33 H 0.37 19.46 6.35 -92.71 -0.59 18.87 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.33 6.64 -2.39 -0.02 1.32 16 38 H 0.11 1.01 4.99 -2.38 -0.01 1.00 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.99 8.09 -2.38 -0.02 0.97 16 41 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.10 0.32 8.10 -2.39 -0.02 0.30 16 44 H 0.07 1.06 6.59 -2.39 -0.02 1.04 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.12 1.50 7.36 -2.38 -0.02 1.48 16 48 H 0.10 1.65 8.10 -2.39 -0.02 1.63 16 49 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.08 2.16 7.05 -2.38 -0.02 2.14 16 51 H 0.05 1.86 6.74 -2.38 -0.02 1.84 16 52 H 0.07 1.92 6.43 -2.39 -0.02 1.91 16 Total: -1.00 -76.13 394.13 2.56 -73.57 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.33 Total: 27.42 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 6.82 Total: 4.76 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -6.52 Total: -121.07 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.10 Total: -32.72 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -76.13 2.56 -73.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267489708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.299 kcal (2) G-P(sol) polarization free energy of solvation -76.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds