Wall clock time and date at job start Tue Mar 31 2020 20:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46921 * 2 1 4 4 C 1.50696 * 109.47584 * 239.99471 * 2 1 3 5 5 O 1.21279 * 119.99772 * 240.00299 * 4 2 1 6 6 N 1.34775 * 120.00115 * 59.99747 * 4 2 1 7 7 C 1.46497 * 120.00063 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.53964 * 35.09939 * 7 6 4 9 9 C 1.53120 * 109.50232 * 274.99699 * 7 6 4 10 10 C 1.53114 * 109.16161 * 182.40502 * 9 7 6 11 11 C 1.53036 * 109.27799 * 57.65854 * 10 9 7 12 12 N 1.46850 * 109.52384 * 300.81924 * 11 10 9 13 13 C 1.46896 * 111.00472 * 185.84130 * 12 11 10 14 14 C 1.50701 * 109.47043 * 66.04154 * 13 12 11 15 15 O 1.21295 * 120.00270 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99953 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00055 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99794 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99742 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00206 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99680 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46920 * 90.00052 * 21 19 17 23 23 H 1.48500 * 109.47154 * 210.00243 * 21 19 17 24 24 H 1.48492 * 109.47065 * 330.00374 * 21 19 17 25 25 C 1.46846 * 111.19870 * 61.74019 * 12 11 10 26 26 C 1.53004 * 109.47294 * 119.99216 * 2 1 3 27 27 C 1.53784 * 113.61355 * 279.14443 * 26 2 1 28 28 C 1.53960 * 87.01858 * 220.04363 * 27 26 2 29 29 C 1.53776 * 113.61862 * 181.53496 * 26 2 1 30 30 H 1.08995 * 109.47094 * 60.00939 * 1 2 3 31 31 H 1.08997 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47417 * 300.00655 * 1 2 3 33 33 H 0.97003 * 119.99927 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.52336 * 62.50238 * 9 7 6 35 35 H 1.09001 * 109.57675 * 302.34588 * 9 7 6 36 36 H 1.09004 * 109.50600 * 297.71890 * 10 9 7 37 37 H 1.08997 * 109.50718 * 177.59550 * 10 9 7 38 38 H 1.08995 * 109.46942 * 60.83456 * 11 10 9 39 39 H 1.08998 * 109.46530 * 180.80782 * 11 10 9 40 40 H 1.08999 * 109.47799 * 186.04465 * 13 12 11 41 41 H 1.09003 * 109.47009 * 306.04671 * 13 12 11 42 42 H 0.97004 * 120.00345 * 0.02562 * 16 14 13 43 43 H 0.96993 * 119.99603 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.46639 * 178.24333 * 25 12 11 45 45 H 1.09010 * 109.45973 * 58.27499 * 25 12 11 46 46 H 1.08997 * 112.84680 * 50.33137 * 26 2 1 47 47 H 1.09005 * 113.61233 * 334.55779 * 27 26 2 48 48 H 1.08994 * 113.61784 * 105.46724 * 27 26 2 49 49 H 1.08998 * 113.53687 * 270.81390 * 28 27 26 50 50 H 1.09003 * 113.66670 * 139.92700 * 28 27 26 51 51 H 1.09004 * 113.60928 * 254.53087 * 29 26 2 52 52 H 1.09003 * 113.61370 * 25.42811 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6965 -1.1189 6 7 1.7069 -0.2502 -2.4545 7 6 2.1948 -0.9412 -3.6505 8 1 2.2299 -2.0143 -3.4627 9 6 3.5986 -0.4364 -3.9956 10 6 4.0767 -1.1192 -5.2800 11 6 3.0810 -0.8312 -6.4059 12 7 1.7539 -1.3336 -6.0280 13 6 0.8036 -1.1991 -7.1401 14 6 1.2214 -2.1045 -8.2700 15 8 2.2129 -2.7944 -8.1596 16 7 0.4926 -2.1485 -9.4029 17 6 0.8724 -2.9726 -10.4308 18 1 1.7552 -3.5868 -10.3324 19 6 0.1213 -3.0174 -11.5989 20 7 -0.9527 -2.2697 -11.7188 21 14 0.6383 -4.1408 -12.9991 22 1 -0.0029 -5.4695 -12.8301 23 1 0.2140 -3.5472 -14.2924 24 1 2.1148 -4.2987 -12.9876 25 6 1.2537 -0.6584 -4.8237 26 6 2.0400 -0.7211 1.2494 27 6 2.0343 0.1562 2.5124 28 6 3.3855 -0.4896 2.8696 29 6 3.5733 -0.7441 1.3647 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1488 0.5382 -2.5436 34 1 4.2819 -0.6746 -3.1805 35 1 3.5721 0.6430 -4.1450 36 1 4.1413 -2.1951 -5.1178 37 1 5.0580 -0.7323 -5.5543 38 1 3.0270 0.2439 -6.5770 39 1 3.4109 -1.3278 -7.3184 40 1 -0.1942 -1.4777 -6.8012 41 1 0.7942 -0.1658 -7.4870 42 1 -0.3006 -1.5971 -9.4912 43 1 -1.4771 -2.3014 -12.5341 44 1 0.2566 -1.0294 -4.5870 45 1 1.2084 0.4160 -5.0022 46 1 1.5766 -1.6970 1.3936 47 1 2.1024 1.2237 2.3029 48 1 1.2341 -0.0890 3.2107 49 1 3.2898 -1.4020 3.4581 50 1 4.1084 0.2111 3.2875 51 1 4.0137 -1.7150 1.1376 52 1 4.0629 0.0769 0.8407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267615935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:47 Heat of formation + Delta-G solvation = -62.626665 kcal Electronic energy + Delta-G solvation = -29566.204245 eV Core-core repulsion = 25565.556431 eV Total energy + Delta-G solvation = -4000.647814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61445 -39.32961 -38.38115 -37.41161 -34.76958 -33.88615 -33.40260 -32.41326 -31.19208 -29.45483 -27.42524 -26.34478 -25.64472 -24.69600 -23.94673 -22.82307 -22.16313 -20.33755 -19.87490 -19.55392 -19.16546 -17.86989 -17.30422 -16.48094 -15.98665 -15.74516 -15.36343 -15.26690 -14.90666 -14.71031 -14.56453 -14.16219 -13.97938 -13.84893 -13.41687 -13.33881 -13.17957 -13.03914 -12.81667 -12.68079 -12.52962 -12.44052 -12.08377 -11.92148 -11.59197 -11.53264 -11.43848 -11.26913 -11.05585 -10.84050 -10.78199 -10.63990 -10.56105 -10.43090 -10.38630 -10.36912 -10.21273 -9.68076 -9.45716 -9.11855 -8.44067 -7.97641 -7.85977 -6.41398 -3.81999 2.55302 2.93598 3.18351 3.26995 3.32864 3.90424 4.02087 4.20496 4.26872 4.33703 4.34493 4.60155 4.66516 4.76842 4.83712 4.85740 4.99516 5.04141 5.06860 5.15532 5.25292 5.32513 5.37402 5.39256 5.40034 5.45123 5.48321 5.59533 5.60588 5.62481 5.64769 5.72876 5.75872 5.81547 5.91583 5.94330 6.00030 6.03112 6.09798 6.14168 6.24181 6.26736 6.37620 6.49684 6.57318 7.25830 7.38951 7.40116 7.55838 8.06993 8.14348 8.62318 9.18746 9.54879 10.06761 10.76372 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030447 B = 0.001870 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.402085 B =14965.709891 C =15381.677934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.095 0.905 4 C 0.518 3.482 5 O -0.530 6.530 6 N -0.727 5.727 7 C 0.149 3.851 8 H 0.098 0.902 9 C -0.127 4.127 10 C -0.111 4.111 11 C 0.051 3.949 12 N -0.511 5.511 13 C 0.048 3.952 14 C 0.444 3.556 15 O -0.575 6.575 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.051 3.949 26 C -0.088 4.088 27 C -0.136 4.136 28 C -0.146 4.146 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 10.997 25.013 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.113 0.887 4 C 0.304 3.696 5 O -0.406 6.406 6 N -0.379 5.379 7 C 0.045 3.955 8 H 0.116 0.884 9 C -0.166 4.166 10 C -0.149 4.149 11 C -0.077 4.077 12 N -0.236 5.236 13 C -0.083 4.083 14 C 0.229 3.771 15 O -0.459 6.459 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.174 4.174 28 C -0.184 4.184 29 C -0.162 4.162 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.092 0.908 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.206 9.319 25.097 26.963 hybrid contribution -0.836 1.182 -1.128 1.836 sum 2.370 10.501 23.969 26.276 Atomic orbital electron populations 1.21751 0.92884 1.02910 1.02536 1.21381 0.97480 1.00394 0.93075 0.88737 1.20609 0.80065 0.84624 0.84349 1.90710 1.37265 1.25968 1.86628 1.46083 1.53970 1.32063 1.05772 1.20931 0.92910 0.98635 0.83070 0.88366 1.21961 0.96414 0.99720 0.98488 1.21503 0.97887 1.01922 0.93591 1.22313 0.88409 0.96665 1.00289 1.61377 1.02478 1.56679 1.03025 1.21833 0.96369 0.98360 0.91763 1.19712 0.86465 0.87062 0.83851 1.90495 1.27928 1.46181 1.81322 1.41864 1.25761 1.39295 1.13209 1.19701 1.10940 1.19439 0.92663 0.87891 1.25257 0.95713 0.98041 0.98958 1.69611 1.16278 1.39849 1.28649 0.85859 0.79076 0.79650 0.79714 1.20408 1.20974 1.19436 1.22254 0.98295 0.96483 0.90743 1.22345 0.97038 0.99074 0.92257 1.23011 0.97863 0.99222 0.97259 1.22884 0.97422 1.00815 0.97268 1.22800 0.95706 1.02543 0.95131 0.92161 0.91942 0.91417 0.77021 0.91609 0.92494 0.90606 0.91500 0.96026 0.87637 0.89333 0.93448 0.77522 0.91911 0.90408 0.94923 0.88853 0.90217 0.91531 0.90315 0.91667 0.90819 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.07 37.16 0.34 -0.50 16 2 C -0.10 -0.75 2.46 -91.77 -0.23 -0.97 16 3 H 0.09 0.56 7.98 -51.93 -0.41 0.14 16 4 C 0.52 5.52 6.93 -10.99 -0.08 5.44 16 5 O -0.53 -7.77 14.62 5.56 0.08 -7.69 16 6 N -0.73 -6.90 4.97 -53.73 -0.27 -7.17 16 7 C 0.15 1.82 2.61 -67.85 -0.18 1.65 16 8 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 9 C -0.13 -1.56 5.58 -26.61 -0.15 -1.70 16 10 C -0.11 -1.55 6.09 -26.65 -0.16 -1.71 16 11 C 0.05 0.82 5.11 -3.83 -0.02 0.80 16 12 N -0.51 -8.43 4.39 -236.11 -1.04 -9.47 16 13 C 0.05 0.84 5.45 -4.98 -0.03 0.82 16 14 C 0.44 10.37 7.46 -10.98 -0.08 10.28 16 15 O -0.58 -15.35 13.92 5.54 0.08 -15.28 16 16 N -0.56 -14.19 5.29 -10.96 -0.06 -14.24 16 17 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 21 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.05 0.64 4.93 -3.83 -0.02 0.62 16 26 C -0.09 -0.70 2.68 -89.81 -0.24 -0.94 16 27 C -0.14 -0.84 7.63 -25.82 -0.20 -1.03 16 28 C -0.15 -1.01 8.09 -25.82 -0.21 -1.22 16 29 C -0.12 -1.10 6.29 -25.92 -0.16 -1.26 16 30 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 2.66 8.02 -40.82 -0.33 2.33 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 2.10 5.80 -51.93 -0.30 1.79 16 40 H 0.09 1.40 7.98 -51.93 -0.41 0.99 16 41 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 42 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 45 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.43 7.99 -51.93 -0.41 0.01 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.79 8.00 -51.93 -0.42 0.37 16 52 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 408.89 15.07 6.16 6.16 Total: -1.00 -32.18 408.89 -10.23 -42.42 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -9.24 Total: 10.60 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.65 Total: 2.34 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.64 Total: -54.59 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.16 Total: -22.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.18 -10.23 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267615935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.212 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds