Wall clock time and date at job start Tue Mar 31 2020 20:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46921 * 2 1 4 4 C 1.50696 * 109.47584 * 239.99471 * 2 1 3 5 5 O 1.21279 * 119.99772 * 240.00299 * 4 2 1 6 6 N 1.34775 * 120.00115 * 59.99747 * 4 2 1 7 7 C 1.46497 * 120.00063 * 180.02562 * 6 4 2 8 8 H 1.08998 * 109.53964 * 35.09939 * 7 6 4 9 9 C 1.53120 * 109.50232 * 274.99699 * 7 6 4 10 10 C 1.53114 * 109.16161 * 182.40502 * 9 7 6 11 11 C 1.53036 * 109.27799 * 57.65854 * 10 9 7 12 12 N 1.46850 * 109.52384 * 300.81924 * 11 10 9 13 13 C 1.46896 * 111.00472 * 185.84130 * 12 11 10 14 14 C 1.50701 * 109.47043 * 66.04154 * 13 12 11 15 15 O 1.21295 * 120.00270 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99953 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00055 * 180.02562 * 16 14 13 18 18 H 1.07998 * 119.99794 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99742 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00206 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99680 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46920 * 90.00052 * 21 19 17 23 23 H 1.48500 * 109.47154 * 210.00243 * 21 19 17 24 24 H 1.48492 * 109.47065 * 330.00374 * 21 19 17 25 25 C 1.46846 * 111.19870 * 61.74019 * 12 11 10 26 26 C 1.53004 * 109.47294 * 119.99216 * 2 1 3 27 27 C 1.53784 * 113.61355 * 279.14443 * 26 2 1 28 28 C 1.53960 * 87.01858 * 220.04363 * 27 26 2 29 29 C 1.53776 * 113.61862 * 181.53496 * 26 2 1 30 30 H 1.08995 * 109.47094 * 60.00939 * 1 2 3 31 31 H 1.08997 * 109.46823 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47417 * 300.00655 * 1 2 3 33 33 H 0.97003 * 119.99927 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.52336 * 62.50238 * 9 7 6 35 35 H 1.09001 * 109.57675 * 302.34588 * 9 7 6 36 36 H 1.09004 * 109.50600 * 297.71890 * 10 9 7 37 37 H 1.08997 * 109.50718 * 177.59550 * 10 9 7 38 38 H 1.08995 * 109.46942 * 60.83456 * 11 10 9 39 39 H 1.08998 * 109.46530 * 180.80782 * 11 10 9 40 40 H 1.08999 * 109.47799 * 186.04465 * 13 12 11 41 41 H 1.09003 * 109.47009 * 306.04671 * 13 12 11 42 42 H 0.97004 * 120.00345 * 0.02562 * 16 14 13 43 43 H 0.96993 * 119.99603 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.46639 * 178.24333 * 25 12 11 45 45 H 1.09010 * 109.45973 * 58.27499 * 25 12 11 46 46 H 1.08997 * 112.84680 * 50.33137 * 26 2 1 47 47 H 1.09005 * 113.61233 * 334.55779 * 27 26 2 48 48 H 1.08994 * 113.61784 * 105.46724 * 27 26 2 49 49 H 1.08998 * 113.53687 * 270.81390 * 28 27 26 50 50 H 1.09003 * 113.66670 * 139.92700 * 28 27 26 51 51 H 1.09004 * 113.60928 * 254.53087 * 29 26 2 52 52 H 1.09003 * 113.61370 * 25.42811 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6965 -1.1189 6 7 1.7069 -0.2502 -2.4545 7 6 2.1948 -0.9412 -3.6505 8 1 2.2299 -2.0143 -3.4627 9 6 3.5986 -0.4364 -3.9956 10 6 4.0767 -1.1192 -5.2800 11 6 3.0810 -0.8312 -6.4059 12 7 1.7539 -1.3336 -6.0280 13 6 0.8036 -1.1991 -7.1401 14 6 1.2214 -2.1045 -8.2700 15 8 2.2129 -2.7944 -8.1596 16 7 0.4926 -2.1485 -9.4029 17 6 0.8724 -2.9726 -10.4308 18 1 1.7552 -3.5868 -10.3324 19 6 0.1213 -3.0174 -11.5989 20 7 -0.9527 -2.2697 -11.7188 21 14 0.6383 -4.1408 -12.9991 22 1 -0.0029 -5.4695 -12.8301 23 1 0.2140 -3.5472 -14.2924 24 1 2.1148 -4.2987 -12.9876 25 6 1.2537 -0.6584 -4.8237 26 6 2.0400 -0.7211 1.2494 27 6 2.0343 0.1562 2.5124 28 6 3.3855 -0.4896 2.8696 29 6 3.5733 -0.7441 1.3647 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1488 0.5382 -2.5436 34 1 4.2819 -0.6746 -3.1805 35 1 3.5721 0.6430 -4.1450 36 1 4.1413 -2.1951 -5.1178 37 1 5.0580 -0.7323 -5.5543 38 1 3.0270 0.2439 -6.5770 39 1 3.4109 -1.3278 -7.3184 40 1 -0.1942 -1.4777 -6.8012 41 1 0.7942 -0.1658 -7.4870 42 1 -0.3006 -1.5971 -9.4912 43 1 -1.4771 -2.3014 -12.5341 44 1 0.2566 -1.0294 -4.5870 45 1 1.2084 0.4160 -5.0022 46 1 1.5766 -1.6970 1.3936 47 1 2.1024 1.2237 2.3029 48 1 1.2341 -0.0890 3.2107 49 1 3.2898 -1.4020 3.4581 50 1 4.1084 0.2111 3.2875 51 1 4.0137 -1.7150 1.1376 52 1 4.0629 0.0769 0.8407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267615935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:46 Heat of formation + Delta-G solvation = -84.985904 kcal Electronic energy + Delta-G solvation = -29567.173814 eV Core-core repulsion = 25565.556431 eV Total energy + Delta-G solvation = -4001.617383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.45841 -40.59456 -39.54489 -38.66454 -36.11393 -35.57015 -34.26624 -33.48573 -33.14498 -30.48656 -28.92680 -26.88945 -26.50736 -26.20512 -24.85739 -24.04974 -23.14106 -21.24628 -21.06442 -20.66758 -20.25661 -19.85698 -18.18430 -17.64448 -17.44641 -16.63309 -16.53100 -16.28552 -16.15428 -16.08353 -15.73681 -15.53840 -15.25856 -15.01986 -14.79876 -14.52033 -14.38731 -13.87824 -13.60357 -13.53208 -13.47214 -13.39868 -13.26142 -13.03642 -13.00736 -12.69045 -12.53660 -12.41036 -12.36180 -12.13583 -12.12960 -11.90278 -11.81278 -11.58252 -11.41274 -11.40243 -11.27423 -10.94859 -10.53350 -10.24286 -10.02884 -9.98246 -9.19914 -8.45699 -5.93773 1.37882 1.41625 1.53952 1.72976 2.05578 2.07275 2.30824 2.87846 3.21370 3.38541 3.57564 3.71605 3.76452 3.77124 3.86412 4.00938 4.04625 4.10277 4.17224 4.30337 4.33787 4.35131 4.43506 4.46089 4.46286 4.53760 4.60402 4.63702 4.71394 4.87348 4.88520 4.90963 4.91825 4.99112 4.99702 5.04956 5.08328 5.12778 5.22574 5.24794 5.33904 5.36657 5.42080 5.43924 5.50449 5.65250 5.89575 6.08923 6.22536 6.62300 6.64037 7.14774 7.36101 7.58455 8.14943 8.71647 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030447 B = 0.001870 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.402085 B =14965.709891 C =15381.677934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.120 0.880 4 C 0.512 3.488 5 O -0.578 6.578 6 N -0.712 5.712 7 C 0.156 3.844 8 H 0.060 0.940 9 C -0.116 4.116 10 C -0.106 4.106 11 C 0.055 3.945 12 N -0.537 5.537 13 C 0.061 3.939 14 C 0.440 3.560 15 O -0.615 6.615 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.057 3.943 26 C -0.094 4.094 27 C -0.121 4.121 28 C -0.144 4.144 29 C -0.133 4.133 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.415 0.585 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.042 0.958 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 13.791 26.182 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.138 0.862 4 C 0.300 3.700 5 O -0.456 6.456 6 N -0.365 5.365 7 C 0.050 3.950 8 H 0.078 0.922 9 C -0.155 4.155 10 C -0.144 4.144 11 C -0.072 4.072 12 N -0.262 5.262 13 C -0.070 4.070 14 C 0.227 3.773 15 O -0.501 6.501 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.071 4.071 26 C -0.113 4.113 27 C -0.158 4.158 28 C -0.182 4.182 29 C -0.171 4.171 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.696 12.162 26.281 29.008 hybrid contribution -0.325 0.274 -1.448 1.509 sum 1.371 12.435 24.833 27.807 Atomic orbital electron populations 1.21765 0.91306 1.02435 1.04271 1.21404 0.98582 1.00818 0.90591 0.86241 1.21321 0.79157 0.84070 0.85423 1.90705 1.39456 1.28210 1.87271 1.45883 1.53754 1.32269 1.04587 1.20634 0.93268 0.96906 0.84156 0.92159 1.21852 0.96073 1.00732 0.96827 1.21440 0.98351 1.00491 0.94145 1.22156 0.88848 0.97160 0.99056 1.61269 1.02457 1.58599 1.03892 1.21695 0.97306 0.97939 0.90013 1.20813 0.85242 0.86735 0.84470 1.90479 1.29546 1.47866 1.82167 1.41920 1.26295 1.39456 1.13521 1.19633 1.11093 1.20857 0.94506 0.90492 1.25995 0.95520 0.99106 1.00602 1.69665 1.16611 1.40357 1.29444 0.84958 0.78342 0.78027 0.77187 1.19807 1.19457 1.19927 1.22267 0.98423 0.97854 0.88554 1.22350 0.96025 0.99048 0.93852 1.22962 0.97354 0.99613 0.95869 1.22888 0.98441 1.01156 0.95690 1.22812 0.96461 1.00865 0.96930 0.90601 0.93538 0.89531 0.74810 0.92533 0.90101 0.93453 0.90068 0.93949 0.92004 0.87026 0.90903 0.76973 0.91347 0.89253 0.91919 0.90655 0.88511 0.90464 0.90523 0.90704 0.93913 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.07 71.98 0.65 -0.56 16 2 C -0.09 -1.15 2.46 -11.54 -0.03 -1.18 16 3 H 0.12 0.94 7.98 -2.38 -0.02 0.92 16 4 C 0.51 10.43 6.93 87.66 0.61 11.03 16 5 O -0.58 -17.51 14.62 -3.03 -0.04 -17.56 16 6 N -0.71 -11.95 4.97 -442.29 -2.20 -14.15 16 7 C 0.16 3.64 2.61 45.05 0.12 3.76 16 8 H 0.06 1.90 7.58 -2.39 -0.02 1.89 16 9 C -0.12 -2.70 5.58 30.67 0.17 -2.53 16 10 C -0.11 -2.99 6.09 30.64 0.19 -2.80 16 11 C 0.06 1.78 5.11 86.32 0.44 2.22 16 12 N -0.54 -17.21 4.39 -900.93 -3.96 -21.16 16 13 C 0.06 2.07 5.45 85.56 0.47 2.54 16 14 C 0.44 20.91 7.46 87.66 0.65 21.57 16 15 O -0.61 -34.22 13.92 -3.08 -0.04 -34.26 16 16 N -0.57 -29.38 5.29 -306.98 -1.62 -31.00 16 17 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 21 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.06 1.27 4.93 86.33 0.43 1.70 16 26 C -0.09 -1.40 2.68 -10.27 -0.03 -1.43 16 27 C -0.12 -1.17 7.63 31.18 0.24 -0.94 16 28 C -0.14 -1.83 8.09 31.18 0.25 -1.58 16 29 C -0.13 -2.36 6.29 31.12 0.20 -2.17 16 30 H 0.08 0.43 7.56 -2.39 -0.02 0.41 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.41 3.95 8.02 -92.71 -0.74 3.21 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 2.55 5.80 -2.39 -0.01 2.54 16 40 H 0.11 3.26 7.98 -2.39 -0.02 3.24 16 41 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 42 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 43 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 45 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 47 H 0.10 0.65 7.99 -2.38 -0.02 0.63 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.04 1.00 8.00 -2.38 -0.02 0.98 16 52 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -74.21 408.89 -0.49 -74.70 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.56 Total: 35.99 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.63 Total: 11.35 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -7.50 Total: -115.50 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.09 Total: -51.82 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.21 -0.49 -74.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267615935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.289 kcal (2) G-P(sol) polarization free energy of solvation -74.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds