Wall clock time and date at job start Tue Mar 31 2020 20:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46930 * 2 1 4 4 C 1.50695 * 109.46958 * 120.00360 * 2 1 3 5 5 O 1.21285 * 119.99999 * 97.09159 * 4 2 1 6 6 N 1.34776 * 119.99961 * 277.08629 * 4 2 1 7 7 C 1.46503 * 120.00154 * 185.40556 * 6 4 2 8 8 C 1.46501 * 119.99979 * 5.40570 * 6 4 2 9 9 H 1.09000 * 110.90170 * 9.76382 * 8 6 4 10 10 C 1.55135 * 110.99176 * 245.89716 * 8 6 4 11 11 C 1.54323 * 103.02094 * 206.25672 * 10 8 6 12 12 N 1.47451 * 107.22949 * 22.28035 * 11 10 8 13 13 C 1.46898 * 110.99727 * 123.26335 * 12 11 10 14 14 C 1.50696 * 109.47190 * 69.87182 * 13 12 11 15 15 O 1.21293 * 120.00426 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99812 * 179.72511 * 14 13 12 17 17 C 1.37098 * 120.00089 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00255 * 0.02562 * 17 16 14 19 19 C 1.38956 * 120.00274 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00077 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99607 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47415 * 90.00101 * 21 19 17 23 23 H 1.48507 * 109.46651 * 209.99628 * 21 19 17 24 24 H 1.48502 * 109.46927 * 329.99234 * 21 19 17 25 25 C 1.47837 * 108.56757 * 0.99524 * 12 11 10 26 26 C 1.53006 * 109.46708 * 240.00276 * 2 1 3 27 27 C 1.53781 * 113.61055 * 159.14118 * 26 2 1 28 28 C 1.53958 * 87.01805 * 220.04670 * 27 26 2 29 29 C 1.53775 * 113.61618 * 61.53187 * 26 2 1 30 30 H 1.08994 * 109.47230 * 176.44031 * 1 2 3 31 31 H 1.09000 * 109.46945 * 296.44364 * 1 2 3 32 32 H 1.09000 * 109.47182 * 56.44090 * 1 2 3 33 33 H 1.08992 * 109.47150 * 269.74749 * 7 6 4 34 34 H 1.09002 * 109.46818 * 29.74619 * 7 6 4 35 35 H 1.09002 * 109.46975 * 149.74542 * 7 6 4 36 36 H 1.09005 * 110.71017 * 87.87264 * 10 8 6 37 37 H 1.09001 * 110.85528 * 324.70791 * 10 8 6 38 38 H 1.09001 * 109.88731 * 262.87930 * 11 10 8 39 39 H 1.08993 * 109.89087 * 141.69038 * 11 10 8 40 40 H 1.09004 * 109.47018 * 309.87545 * 13 12 11 41 41 H 1.08996 * 109.46777 * 189.87444 * 13 12 11 42 42 H 0.97006 * 120.00237 * 0.02562 * 16 14 13 43 43 H 0.97001 * 119.99865 * 180.02562 * 20 19 17 44 44 H 1.09000 * 110.38023 * 94.73290 * 25 12 11 45 45 H 1.09000 * 110.37233 * 217.07876 * 25 12 11 46 46 H 1.08997 * 112.84598 * 290.32790 * 26 2 1 47 47 H 1.09006 * 113.61448 * 334.56233 * 27 26 2 48 48 H 1.08998 * 113.61644 * 105.46907 * 27 26 2 49 49 H 1.09007 * 113.53359 * 270.81078 * 28 27 26 50 50 H 1.08997 * 113.74935 * 139.94055 * 28 27 26 51 51 H 1.09001 * 113.61247 * 254.53003 * 29 26 2 52 52 H 1.08999 * 113.61504 * 25.43053 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3567 -1.8774 1.1669 6 7 2.1212 -0.0491 2.4014 7 6 2.7193 -0.7026 3.5682 8 6 1.6196 1.3233 2.5074 9 1 1.0565 1.6014 1.6165 10 6 2.7796 2.3205 2.7655 11 6 2.0803 3.4853 3.4976 12 7 0.8440 2.9468 4.0942 13 6 0.8160 3.1767 5.5448 14 6 0.6362 4.6479 5.8168 15 8 0.5412 5.4284 4.8932 16 7 0.5758 5.0959 7.0865 17 6 0.4128 6.4345 7.3341 18 1 0.3322 7.1299 6.5118 19 6 0.3500 6.8964 8.6432 20 7 0.1942 8.1794 8.8804 21 14 0.4886 5.6935 10.0656 22 1 1.9151 5.5433 10.4497 23 1 -0.2847 6.2067 11.2249 24 1 -0.0546 4.3744 9.6531 25 6 0.7619 1.5035 3.7848 26 6 2.0400 -0.7212 -1.2494 27 6 3.4867 -0.3577 -1.6231 28 6 3.0233 -0.3618 -3.0913 29 6 1.6121 -0.0508 -2.5655 30 1 -0.3633 -1.0256 -0.0638 31 1 -0.3633 0.4576 0.9202 32 1 -0.3633 0.5681 -0.8564 33 1 1.9434 -1.2195 4.1326 34 1 3.4684 -1.4220 3.2374 35 1 3.1914 0.0477 4.2025 36 1 3.2119 2.6609 1.8245 37 1 3.5442 1.8709 3.3990 38 1 1.8358 4.2758 2.7881 39 1 2.7307 3.8749 4.2806 40 1 1.7541 2.8379 5.9845 41 1 -0.0127 2.6218 5.9846 42 1 0.6486 4.4714 7.8252 43 1 0.1508 8.5018 9.7942 44 1 1.1742 0.9154 4.6047 45 1 -0.2713 1.2149 3.5918 46 1 1.8520 -1.7946 -1.2247 47 1 3.7963 0.6245 -1.2658 48 1 4.2080 -1.1408 -1.3897 49 1 3.1055 -1.3373 -3.5709 50 1 3.4532 0.4415 -3.6895 51 1 0.8221 -0.5867 -3.0917 52 1 1.4082 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269250551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:54 Heat of formation + Delta-G solvation = -61.071035 kcal Electronic energy + Delta-G solvation = -30128.223116 eV Core-core repulsion = 26127.642759 eV Total energy + Delta-G solvation = -4000.580357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71514 -40.63086 -39.60877 -38.92376 -36.33612 -35.79799 -33.93062 -33.73868 -32.30288 -29.69493 -28.62337 -28.00082 -26.99445 -26.12006 -25.81515 -23.70855 -22.30484 -22.20562 -21.18833 -20.49238 -20.19254 -19.66742 -18.42864 -17.67975 -17.48670 -16.87067 -16.64583 -16.36558 -16.31598 -15.88133 -15.59862 -15.52712 -15.24960 -14.69164 -14.60440 -14.50450 -14.44351 -14.11559 -13.82109 -13.63962 -13.43860 -13.34642 -13.32955 -13.05012 -13.01460 -12.95322 -12.65658 -12.56316 -12.45157 -12.39365 -12.27623 -12.09598 -11.97322 -11.68978 -11.48045 -11.39927 -11.24165 -11.02311 -10.66039 -10.39029 -10.21988 -9.73717 -9.22424 -8.39359 -5.99701 1.30844 1.36056 1.45005 1.55841 1.85604 1.99290 2.24074 2.69355 3.16894 3.20960 3.38503 3.54319 3.63739 3.70745 3.73538 3.89817 3.98065 4.02151 4.12920 4.23192 4.26805 4.29395 4.35375 4.36901 4.43197 4.45935 4.47937 4.58979 4.66364 4.82077 4.83253 4.84843 4.85430 4.88847 4.91170 4.97929 5.01328 5.03736 5.09834 5.14686 5.22290 5.30659 5.37695 5.44412 5.54559 5.64365 5.89335 5.98583 6.05220 6.31903 6.62084 6.91228 7.11794 7.42768 8.00259 8.78246 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.002171 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.852405 B =12896.372593 C =13429.281101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.106 0.894 4 C 0.520 3.480 5 O -0.577 6.577 6 N -0.602 5.602 7 C 0.079 3.921 8 C 0.132 3.868 9 H 0.122 0.878 10 C -0.144 4.144 11 C 0.058 3.942 12 N -0.524 5.524 13 C 0.051 3.949 14 C 0.452 3.548 15 O -0.604 6.604 16 N -0.595 5.595 17 C -0.324 4.324 18 H 0.056 0.944 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.231 1.231 25 C 0.037 3.963 26 C -0.095 4.095 27 C -0.143 4.143 28 C -0.139 4.139 29 C -0.127 4.127 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.069 0.931 45 H 0.093 0.907 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -22.564 -15.999 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.124 0.876 4 C 0.310 3.690 5 O -0.456 6.456 6 N -0.334 5.334 7 C -0.063 4.063 8 C 0.027 3.973 9 H 0.140 0.860 10 C -0.183 4.183 11 C -0.070 4.070 12 N -0.249 5.249 13 C -0.081 4.081 14 C 0.240 3.760 15 O -0.488 6.488 16 N -0.237 5.237 17 C -0.453 4.453 18 H 0.074 0.926 19 C -0.216 4.216 20 N -0.576 5.576 21 Si 0.784 3.216 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.154 1.154 25 C -0.091 4.091 26 C -0.114 4.114 27 C -0.180 4.180 28 C -0.177 4.177 29 C -0.164 4.164 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.717 -22.238 -16.707 28.212 hybrid contribution 0.754 -0.173 1.666 1.837 sum 5.471 -22.412 -15.041 27.540 Atomic orbital electron populations 1.21775 0.91479 1.02852 1.03771 1.21428 0.98533 1.00566 0.91521 0.87587 1.21127 0.76498 0.86383 0.84959 1.90657 1.51063 1.18002 1.85873 1.47835 1.60131 1.14397 1.11023 1.21693 0.98579 0.98270 0.87760 1.22390 0.94621 0.80054 1.00201 0.86018 1.23158 0.97831 0.95175 1.02133 1.22602 0.89013 0.97136 0.98247 1.63118 1.37941 1.13872 1.09970 1.22025 1.03946 0.91901 0.90210 1.20886 0.81257 0.91638 0.82259 1.90546 1.54493 1.59153 1.44598 1.42049 1.67347 1.07216 1.07076 1.18983 1.49095 0.83396 0.93874 0.92614 1.26106 0.96318 0.98416 1.00719 1.69804 1.50051 1.15476 1.22312 0.85384 0.79681 0.79206 0.77371 1.18229 1.20224 1.15386 1.23385 1.01431 0.87283 0.96992 1.22392 0.96572 0.99608 0.92809 1.23026 0.96109 1.01467 0.97405 1.22819 0.96899 1.02273 0.95691 1.22934 0.97161 1.01451 0.94846 0.92669 0.91711 0.89419 0.91996 0.91662 0.89703 0.88981 0.90132 0.91798 0.94022 0.90112 0.86390 0.77609 0.91246 0.91318 0.88921 0.90163 0.89753 0.92958 0.90228 0.90544 0.90746 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.60 71.98 0.62 -1.21 16 2 C -0.10 -1.50 1.58 -11.54 -0.02 -1.51 16 3 H 0.11 1.34 6.77 -2.39 -0.02 1.32 16 4 C 0.52 10.61 6.77 87.66 0.59 11.20 16 5 O -0.58 -16.02 15.58 -3.04 -0.05 -16.07 16 6 N -0.60 -10.35 2.91 -814.86 -2.37 -12.72 16 7 C 0.08 1.23 8.87 127.77 1.13 2.37 16 8 C 0.13 2.14 2.78 46.38 0.13 2.27 16 9 H 0.12 1.82 4.74 -2.39 -0.01 1.81 16 10 C -0.14 -2.51 6.52 31.77 0.21 -2.30 16 11 C 0.06 1.53 5.65 86.65 0.49 2.02 16 12 N -0.52 -14.08 4.85 -890.10 -4.32 -18.40 16 13 C 0.05 1.44 5.03 85.56 0.43 1.87 16 14 C 0.45 19.65 7.43 87.66 0.65 20.30 16 15 O -0.60 -32.37 15.12 -3.07 -0.05 -32.42 16 16 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 17 C -0.32 -18.70 10.16 84.04 0.85 -17.84 16 18 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 19 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 20 N -0.94 -56.03 13.96 21.66 0.30 -55.72 16 21 Si 0.96 38.18 27.74 68.60 1.90 40.09 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 25 C 0.04 0.68 6.19 86.78 0.54 1.22 16 26 C -0.09 -1.47 2.73 -10.27 -0.03 -1.50 16 27 C -0.14 -2.15 7.62 31.18 0.24 -1.91 16 28 C -0.14 -1.67 8.09 31.18 0.25 -1.42 16 29 C -0.13 -1.43 6.82 31.12 0.21 -1.22 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.83 6.77 -2.39 -0.02 0.82 16 32 H 0.09 0.86 7.62 -2.39 -0.02 0.85 16 33 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.06 1.18 7.50 -2.39 -0.02 1.16 16 35 H 0.08 1.06 6.63 -2.39 -0.02 1.04 16 36 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 1.30 6.80 -2.39 -0.02 1.28 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.23 7.31 -2.39 -0.02 1.21 16 40 H 0.08 1.87 7.96 -2.38 -0.02 1.85 16 41 H 0.12 2.76 8.07 -2.39 -0.02 2.74 16 42 H 0.39 14.70 5.76 -92.70 -0.53 14.16 16 43 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.07 1.07 6.38 -2.39 -0.02 1.05 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.08 1.57 7.68 -2.39 -0.02 1.56 16 47 H 0.08 1.16 7.99 -2.38 -0.02 1.14 16 48 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 49 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.09 0.89 8.10 -2.39 -0.02 0.87 16 Total: -1.00 -78.33 401.33 0.95 -77.39 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.32 Total: 34.86 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.77 Total: 11.87 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -7.95 Total: -115.71 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.09 Total: -48.49 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.09 kcal Total: -78.33 0.95 -77.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269250551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.315 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds