Wall clock time and date at job start Tue Mar 31 2020 21:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50690 * 120.00346 * 2 1 4 4 C 1.50702 * 119.99525 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47365 * 2.86588 * 4 2 1 6 6 C 1.52997 * 109.47119 * 242.86094 * 4 2 1 7 7 C 1.50703 * 109.46843 * 122.86373 * 4 2 1 8 8 O 1.21286 * 120.00331 * 353.54688 * 7 4 2 9 9 N 1.34782 * 119.99804 * 173.54189 * 7 4 2 10 10 C 1.46498 * 119.99862 * 180.02562 * 9 7 4 11 11 H 1.09003 * 109.47386 * 35.00078 * 10 9 7 12 12 C 1.53007 * 109.47115 * 274.99973 * 10 9 7 13 13 C 1.52999 * 109.47349 * 155.00342 * 10 9 7 14 14 C 1.53936 * 113.73125 * 276.72615 * 13 10 9 15 15 N 1.47953 * 86.18128 * 221.91809 * 14 13 10 16 16 C 1.46896 * 111.00349 * 137.58378 * 15 14 13 17 17 C 1.50698 * 109.47531 * 90.63829 * 16 15 14 18 18 O 1.21295 * 119.99758 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00330 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99898 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00383 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99943 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99716 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99692 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46905 * 90.00011 * 24 22 20 26 26 H 1.48498 * 109.46725 * 209.99678 * 24 22 20 27 27 H 1.48498 * 109.47266 * 330.00040 * 24 22 20 28 28 C 1.47964 * 90.76595 * 24.68843 * 15 14 13 29 29 H 1.08001 * 120.00113 * 5.52405 * 1 2 3 30 30 H 1.08007 * 120.00415 * 185.52604 * 1 2 3 31 31 H 1.09004 * 109.47130 * 270.00071 * 3 2 1 32 32 H 1.09005 * 109.47348 * 29.99653 * 3 2 1 33 33 H 1.09003 * 109.47598 * 150.00181 * 3 2 1 34 34 H 1.09003 * 109.47027 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.46956 * 299.99491 * 5 4 2 36 36 H 1.08994 * 109.47666 * 60.00006 * 5 4 2 37 37 H 1.09003 * 109.47057 * 300.00190 * 6 4 2 38 38 H 1.08998 * 109.47218 * 60.00499 * 6 4 2 39 39 H 1.09003 * 109.47622 * 180.02562 * 6 4 2 40 40 H 0.96999 * 120.00080 * 359.97438 * 9 7 4 41 41 H 1.08998 * 109.47332 * 179.97438 * 12 10 9 42 42 H 1.09004 * 109.46754 * 60.00131 * 12 10 9 43 43 H 1.09003 * 109.47080 * 300.00293 * 12 10 9 44 44 H 1.09004 * 112.93772 * 48.42750 * 13 10 9 45 45 H 1.08999 * 113.75844 * 336.23666 * 14 13 10 46 46 H 1.09004 * 113.75767 * 107.59848 * 14 13 10 47 47 H 1.09002 * 109.47641 * 210.64230 * 16 15 14 48 48 H 1.09004 * 109.46935 * 330.64172 * 16 15 14 49 49 H 0.96995 * 120.00400 * 0.02562 * 19 17 16 50 50 H 0.97003 * 119.99086 * 180.02562 * 23 22 20 51 51 H 1.08992 * 113.76092 * 220.99317 * 28 15 14 52 52 H 1.09001 * 113.75758 * 89.62486 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 1.0706 -2.4672 -0.0710 6 6 2.8882 -1.4173 1.2843 7 6 2.9822 -1.3553 -1.1929 8 8 2.9377 -0.4786 -2.0298 9 7 3.8536 -2.3743 -1.3301 10 6 4.7472 -2.4227 -2.4900 11 1 5.0420 -1.4097 -2.7641 12 6 4.0210 -3.0785 -3.6663 13 6 5.9929 -3.2394 -2.1404 14 6 7.0765 -2.4318 -1.4035 15 7 8.0486 -3.1308 -2.2727 16 6 9.0771 -2.2041 -2.7639 17 6 10.2402 -2.1907 -1.8057 18 8 10.2150 -2.8852 -0.8116 19 7 11.3083 -1.4070 -2.0533 20 6 12.3661 -1.3945 -1.1813 21 1 12.3437 -2.0129 -0.2961 22 6 13.4672 -0.5861 -1.4363 23 7 14.4809 -0.5737 -0.6001 24 14 13.5057 0.4840 -2.9669 25 1 12.9152 1.8111 -2.6580 26 1 14.9112 0.6593 -3.4130 27 1 12.7213 -0.1676 -4.0464 28 6 7.0034 -3.3536 -3.2961 29 1 -0.5400 0.9310 -0.0900 30 1 -0.5401 -0.9310 0.0901 31 1 2.2452 1.6196 -1.0277 32 1 1.4744 2.0647 0.5138 33 1 3.0159 1.1746 0.5138 34 1 1.6156 -3.4112 -0.0701 35 1 0.4061 -2.4310 0.7922 36 1 0.4831 -2.3873 -0.9855 37 1 3.5954 -0.5895 1.3352 38 1 2.2236 -1.3811 2.1475 39 1 3.4335 -2.3612 1.2846 40 1 3.8896 -3.0752 -0.6606 41 1 4.6857 -3.1141 -4.5294 42 1 3.1336 -2.4966 -3.9154 43 1 3.7262 -4.0915 -3.3922 44 1 5.7569 -4.1930 -1.6681 45 1 7.0211 -1.3579 -1.5816 46 1 7.1706 -2.6846 -0.3474 47 1 9.4196 -2.5289 -3.7465 48 1 8.6566 -1.2012 -2.8389 49 1 11.3284 -0.8514 -2.8481 50 1 15.2494 -0.0091 -0.7780 51 1 7.0391 -4.3430 -3.7520 52 1 6.9265 -2.5493 -4.0277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276413064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:31 Heat of formation + Delta-G solvation = -19.883959 kcal Electronic energy + Delta-G solvation = -29764.193281 eV Core-core repulsion = 25765.398930 eV Total energy + Delta-G solvation = -3998.794351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.90073 -40.00440 -38.01930 -37.09729 -35.43803 -33.91538 -32.79308 -31.66845 -30.97708 -29.49228 -28.79902 -26.45603 -26.31858 -25.64796 -24.56053 -23.77197 -22.03180 -20.72573 -19.87052 -19.35477 -18.52525 -18.07616 -16.80394 -16.76161 -16.13015 -15.88587 -15.41055 -15.25467 -14.99471 -14.90075 -14.65327 -14.20920 -14.11715 -13.58161 -13.37727 -13.34409 -13.14001 -12.97193 -12.73150 -12.67058 -12.62987 -12.54102 -12.42236 -12.37224 -12.18535 -11.99051 -11.91602 -11.52180 -11.38387 -11.18403 -11.06881 -10.96361 -10.75553 -10.70814 -10.58361 -9.95932 -9.92668 -9.54154 -9.34766 -9.22536 -8.79327 -8.27539 -8.15295 -6.29095 -3.80220 1.89688 2.43116 2.96473 3.03732 3.07797 3.15929 3.76405 3.85055 4.11308 4.11864 4.22848 4.37384 4.47804 4.52769 4.66675 4.72663 4.92783 4.97283 5.09901 5.11581 5.15899 5.17241 5.23659 5.31208 5.32063 5.35440 5.36067 5.37839 5.46682 5.54800 5.56064 5.56579 5.58467 5.63913 5.70241 5.76718 5.79987 5.86020 5.89037 5.95318 5.97460 6.11143 6.29757 6.34270 6.49245 6.57972 7.07430 7.26698 7.60543 8.01535 8.16608 8.63016 8.97836 9.45018 9.87108 10.84212 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002249 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.538476 B =12446.914844 C =13093.772786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.118 4.118 4 C -0.049 4.049 5 C -0.141 4.141 6 C -0.141 4.141 7 C 0.528 3.472 8 O -0.533 6.533 9 N -0.721 5.721 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.007 3.993 17 C 0.456 3.544 18 O -0.557 6.557 19 N -0.595 5.595 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.092 0.908 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.972 -2.073 -3.226 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.090 4.090 3 C -0.175 4.175 4 C -0.052 4.052 5 C -0.199 4.199 6 C -0.199 4.199 7 C 0.314 3.686 8 O -0.409 6.409 9 N -0.373 5.373 10 C 0.046 3.954 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.144 4.144 14 C -0.112 4.112 15 N -0.171 5.171 16 C -0.126 4.126 17 C 0.241 3.759 18 O -0.438 6.438 19 N -0.235 5.235 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.120 4.120 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.110 0.890 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.375 -2.373 -2.846 28.616 hybrid contribution 0.009 1.349 -1.279 1.859 sum -28.365 -1.024 -4.126 28.682 Atomic orbital electron populations 1.23765 0.95105 1.02265 1.02997 1.21237 0.94873 0.94064 0.98786 1.20861 0.99682 0.93916 1.03022 1.19849 0.95408 0.95387 0.94585 1.21929 0.98735 0.96171 1.03041 1.21891 0.99819 1.02795 0.95356 1.20353 0.80298 0.81184 0.86803 1.90690 1.68854 1.37881 1.43432 1.46068 1.38470 1.26610 1.26156 1.21043 0.88513 1.00329 0.85556 0.89415 1.22137 1.01061 1.00807 0.97906 1.23315 0.92666 1.00065 0.98371 1.24002 0.90186 0.96699 1.00273 1.68375 1.05092 1.34575 1.09033 1.22523 0.94936 0.95920 0.99180 1.19590 0.84014 0.83981 0.88311 1.90558 1.80589 1.43415 1.29252 1.42230 1.17410 1.40302 1.23526 1.19422 0.93588 1.25065 1.05114 0.86335 1.25035 0.95527 0.97849 0.97832 1.69625 1.07046 1.39502 1.36132 0.86675 0.78549 0.81267 0.82920 1.19679 1.20175 1.19526 1.23967 0.90825 1.02582 0.94584 0.88284 0.87936 0.90367 0.92158 0.92092 0.91786 0.90951 0.91733 0.91530 0.91162 0.91676 0.76552 0.91391 0.92242 0.92339 0.87747 0.91406 0.88996 0.89298 0.92358 0.79805 0.91665 0.89004 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 13.27 29.02 0.39 -1.20 16 2 C -0.09 -0.79 4.41 -101.07 -0.45 -1.24 16 3 C -0.12 -1.11 9.10 36.00 0.33 -0.78 16 4 C -0.05 -0.39 0.75 -156.81 -0.12 -0.50 16 5 C -0.14 -0.83 7.11 37.16 0.26 -0.57 16 6 C -0.14 -0.94 8.17 37.16 0.30 -0.64 16 7 C 0.53 5.36 6.29 -10.98 -0.07 5.29 16 8 O -0.53 -7.36 14.42 5.55 0.08 -7.28 16 9 N -0.72 -5.99 4.92 -53.80 -0.26 -6.26 16 10 C 0.15 1.37 2.41 -67.93 -0.16 1.21 16 11 H 0.09 0.99 7.37 -51.93 -0.38 0.61 16 12 C -0.16 -1.31 9.29 37.16 0.35 -0.97 16 13 C -0.12 -1.21 3.49 -89.69 -0.31 -1.53 16 14 C 0.02 0.23 7.51 -2.77 -0.02 0.21 16 15 N -0.45 -6.97 5.65 -239.75 -1.35 -8.32 16 16 C 0.01 0.11 5.28 -4.98 -0.03 0.09 16 17 C 0.46 10.59 7.83 -10.99 -0.09 10.51 16 18 O -0.56 -15.34 16.01 5.54 0.09 -15.25 16 19 N -0.59 -14.45 5.09 -10.96 -0.06 -14.50 16 20 C -0.30 -8.70 10.16 -14.93 -0.15 -8.86 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 24 Si 0.88 19.64 27.74 -169.99 -4.71 14.92 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 28 C 0.01 0.11 6.57 -2.76 -0.02 0.09 16 29 H 0.10 0.71 8.05 -52.49 -0.42 0.28 16 30 H 0.10 0.65 5.72 -52.48 -0.30 0.35 16 31 H 0.08 0.87 7.39 -51.93 -0.38 0.48 16 32 H 0.06 0.47 8.07 -51.93 -0.42 0.06 16 33 H 0.06 0.57 6.79 -51.93 -0.35 0.22 16 34 H 0.06 0.30 8.04 -51.93 -0.42 -0.12 16 35 H 0.07 0.35 7.28 -51.93 -0.38 -0.03 16 36 H 0.06 0.43 7.71 -51.93 -0.40 0.03 16 37 H 0.07 0.51 6.91 -51.93 -0.36 0.16 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.35 7.23 -51.93 -0.38 -0.02 16 40 H 0.40 2.49 7.54 -40.82 -0.31 2.18 16 41 H 0.07 0.51 7.43 -51.93 -0.39 0.12 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.91 7.29 -51.93 -0.38 0.53 16 46 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 47 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 48 H 0.06 0.86 7.38 -51.93 -0.38 0.48 16 49 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 50 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 52 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 LS Contribution 412.08 15.07 6.21 6.21 Total: -1.00 -35.39 412.08 -7.92 -43.31 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.80 Total: 10.32 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 0.12 Total: 2.14 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.90 Total: -54.37 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.17 Total: -22.53 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.39 -7.92 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.429 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds