Wall clock time and date at job start Tue Mar 31 2020 21:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50690 * 120.00346 * 2 1 4 4 C 1.50702 * 119.99525 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47365 * 2.86588 * 4 2 1 6 6 C 1.52997 * 109.47119 * 242.86094 * 4 2 1 7 7 C 1.50703 * 109.46843 * 122.86373 * 4 2 1 8 8 O 1.21286 * 120.00331 * 353.54688 * 7 4 2 9 9 N 1.34782 * 119.99804 * 173.54189 * 7 4 2 10 10 C 1.46498 * 119.99862 * 180.02562 * 9 7 4 11 11 H 1.09003 * 109.47386 * 35.00078 * 10 9 7 12 12 C 1.53007 * 109.47115 * 274.99973 * 10 9 7 13 13 C 1.52999 * 109.47349 * 155.00342 * 10 9 7 14 14 C 1.53936 * 113.73125 * 276.72615 * 13 10 9 15 15 N 1.47953 * 86.18128 * 221.91809 * 14 13 10 16 16 C 1.46896 * 111.00349 * 137.58378 * 15 14 13 17 17 C 1.50698 * 109.47531 * 90.63829 * 16 15 14 18 18 O 1.21295 * 119.99758 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00330 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99898 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00383 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99943 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99716 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99692 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46905 * 90.00011 * 24 22 20 26 26 H 1.48498 * 109.46725 * 209.99678 * 24 22 20 27 27 H 1.48498 * 109.47266 * 330.00040 * 24 22 20 28 28 C 1.47964 * 90.76595 * 24.68843 * 15 14 13 29 29 H 1.08001 * 120.00113 * 5.52405 * 1 2 3 30 30 H 1.08007 * 120.00415 * 185.52604 * 1 2 3 31 31 H 1.09004 * 109.47130 * 270.00071 * 3 2 1 32 32 H 1.09005 * 109.47348 * 29.99653 * 3 2 1 33 33 H 1.09003 * 109.47598 * 150.00181 * 3 2 1 34 34 H 1.09003 * 109.47027 * 180.02562 * 5 4 2 35 35 H 1.08998 * 109.46956 * 299.99491 * 5 4 2 36 36 H 1.08994 * 109.47666 * 60.00006 * 5 4 2 37 37 H 1.09003 * 109.47057 * 300.00190 * 6 4 2 38 38 H 1.08998 * 109.47218 * 60.00499 * 6 4 2 39 39 H 1.09003 * 109.47622 * 180.02562 * 6 4 2 40 40 H 0.96999 * 120.00080 * 359.97438 * 9 7 4 41 41 H 1.08998 * 109.47332 * 179.97438 * 12 10 9 42 42 H 1.09004 * 109.46754 * 60.00131 * 12 10 9 43 43 H 1.09003 * 109.47080 * 300.00293 * 12 10 9 44 44 H 1.09004 * 112.93772 * 48.42750 * 13 10 9 45 45 H 1.08999 * 113.75844 * 336.23666 * 14 13 10 46 46 H 1.09004 * 113.75767 * 107.59848 * 14 13 10 47 47 H 1.09002 * 109.47641 * 210.64230 * 16 15 14 48 48 H 1.09004 * 109.46935 * 330.64172 * 16 15 14 49 49 H 0.96995 * 120.00400 * 0.02562 * 19 17 16 50 50 H 0.97003 * 119.99086 * 180.02562 * 23 22 20 51 51 H 1.08992 * 113.76092 * 220.99317 * 28 15 14 52 52 H 1.09001 * 113.75758 * 89.62486 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 1.0706 -2.4672 -0.0710 6 6 2.8882 -1.4173 1.2843 7 6 2.9822 -1.3553 -1.1929 8 8 2.9377 -0.4786 -2.0298 9 7 3.8536 -2.3743 -1.3301 10 6 4.7472 -2.4227 -2.4900 11 1 5.0420 -1.4097 -2.7641 12 6 4.0210 -3.0785 -3.6663 13 6 5.9929 -3.2394 -2.1404 14 6 7.0765 -2.4318 -1.4035 15 7 8.0486 -3.1308 -2.2727 16 6 9.0771 -2.2041 -2.7639 17 6 10.2402 -2.1907 -1.8057 18 8 10.2150 -2.8852 -0.8116 19 7 11.3083 -1.4070 -2.0533 20 6 12.3661 -1.3945 -1.1813 21 1 12.3437 -2.0129 -0.2961 22 6 13.4672 -0.5861 -1.4363 23 7 14.4809 -0.5737 -0.6001 24 14 13.5057 0.4840 -2.9669 25 1 12.9152 1.8111 -2.6580 26 1 14.9112 0.6593 -3.4130 27 1 12.7213 -0.1676 -4.0464 28 6 7.0034 -3.3536 -3.2961 29 1 -0.5400 0.9310 -0.0900 30 1 -0.5401 -0.9310 0.0901 31 1 2.2452 1.6196 -1.0277 32 1 1.4744 2.0647 0.5138 33 1 3.0159 1.1746 0.5138 34 1 1.6156 -3.4112 -0.0701 35 1 0.4061 -2.4310 0.7922 36 1 0.4831 -2.3873 -0.9855 37 1 3.5954 -0.5895 1.3352 38 1 2.2236 -1.3811 2.1475 39 1 3.4335 -2.3612 1.2846 40 1 3.8896 -3.0752 -0.6606 41 1 4.6857 -3.1141 -4.5294 42 1 3.1336 -2.4966 -3.9154 43 1 3.7262 -4.0915 -3.3922 44 1 5.7569 -4.1930 -1.6681 45 1 7.0211 -1.3579 -1.5816 46 1 7.1706 -2.6846 -0.3474 47 1 9.4196 -2.5289 -3.7465 48 1 8.6566 -1.2012 -2.8389 49 1 11.3284 -0.8514 -2.8481 50 1 15.2494 -0.0091 -0.7780 51 1 7.0391 -4.3430 -3.7520 52 1 6.9265 -2.5493 -4.0277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276413064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:30 Heat of formation + Delta-G solvation = -47.469436 kcal Electronic energy + Delta-G solvation = -29765.389477 eV Core-core repulsion = 25765.398930 eV Total energy + Delta-G solvation = -3999.990547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74314 -41.00897 -39.76605 -37.82531 -36.34096 -35.93954 -33.78776 -33.49150 -31.91207 -30.50402 -29.37226 -27.65346 -26.98801 -26.89500 -25.63015 -24.82682 -22.99667 -21.50667 -21.24449 -20.73530 -20.25768 -19.02956 -17.80020 -17.55792 -17.50259 -16.84212 -16.65375 -16.44725 -16.28828 -15.87815 -15.68586 -15.31434 -14.98578 -14.91228 -14.68709 -14.41631 -14.28692 -14.02893 -13.94749 -13.70174 -13.57613 -13.33008 -13.18728 -13.06975 -13.04487 -13.02187 -12.70579 -12.67436 -12.53069 -12.43433 -12.00542 -11.97569 -11.82103 -11.78472 -11.63865 -11.60339 -11.52050 -10.70170 -10.46696 -10.25946 -10.11161 -9.89758 -9.60943 -8.42793 -6.03470 1.26151 1.28087 1.33482 1.42399 1.67383 1.95056 2.21149 2.27048 2.63310 3.12742 3.19305 3.40473 3.52846 3.64245 3.77826 3.93337 4.05426 4.10177 4.17096 4.22185 4.31529 4.32691 4.38306 4.45530 4.46907 4.51988 4.64099 4.69682 4.74398 4.76787 4.80699 4.82407 4.85280 4.85676 4.86699 5.01377 5.06571 5.12776 5.21202 5.25666 5.28821 5.33157 5.42590 5.52318 5.58062 5.70892 5.90089 5.94394 6.03199 6.58385 6.58928 6.87203 7.29298 7.38696 7.96630 8.74996 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002249 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.538476 B =12446.914844 C =13093.772786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 C -0.116 4.116 4 C -0.046 4.046 5 C -0.139 4.139 6 C -0.140 4.140 7 C 0.524 3.476 8 O -0.575 6.575 9 N -0.712 5.712 10 C 0.156 3.844 11 H 0.066 0.934 12 C -0.154 4.154 13 C -0.099 4.099 14 C 0.009 3.991 15 N -0.485 5.485 16 C 0.019 3.981 17 C 0.452 3.548 18 O -0.609 6.609 19 N -0.595 5.595 20 C -0.328 4.328 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.232 1.232 28 C 0.018 3.982 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.412 0.588 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.118 0.882 48 H 0.085 0.915 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.108 0.892 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.253 -2.292 -5.827 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.114 4.114 3 C -0.172 4.172 4 C -0.049 4.049 5 C -0.196 4.196 6 C -0.197 4.197 7 C 0.311 3.689 8 O -0.454 6.454 9 N -0.364 5.364 10 C 0.051 3.949 11 H 0.085 0.915 12 C -0.212 4.212 13 C -0.118 4.118 14 C -0.120 4.120 15 N -0.208 5.208 16 C -0.113 4.113 17 C 0.240 3.760 18 O -0.493 6.493 19 N -0.237 5.237 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.155 1.155 28 C -0.111 4.111 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.136 0.864 48 H 0.102 0.898 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.126 0.874 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -30.681 -2.627 -5.448 31.271 hybrid contribution 0.697 1.350 -0.334 1.556 sum -29.984 -1.276 -5.782 30.563 Atomic orbital electron populations 1.23974 0.94770 1.03260 1.01186 1.21363 0.95476 0.94185 1.00354 1.20809 0.99861 0.95014 1.01560 1.19860 0.95443 0.95804 0.93780 1.21945 0.98498 0.95809 1.03354 1.21903 0.99729 1.02805 0.95286 1.20820 0.80432 0.80681 0.86960 1.90671 1.70176 1.39428 1.45079 1.46008 1.37686 1.26514 1.26224 1.20915 0.88514 0.99180 0.86284 0.91534 1.22075 1.00416 1.01098 0.97612 1.23130 0.91781 0.99768 0.97137 1.24012 0.91672 0.97033 0.99267 1.68331 1.06309 1.34736 1.11426 1.22457 0.92697 0.98105 0.98017 1.20929 0.84863 0.81840 0.88388 1.90530 1.81744 1.45150 1.31848 1.42077 1.16764 1.41263 1.23597 1.18996 0.96214 1.25649 1.04837 0.92773 1.26118 0.94092 0.98996 1.02251 1.69806 1.08060 1.40715 1.38931 0.85371 0.79321 0.78902 0.77974 1.18273 1.19836 1.15500 1.24084 0.88569 1.04131 0.94273 0.87943 0.86284 0.92686 0.91023 0.92740 0.90251 0.89447 0.92425 0.93186 0.89927 0.90341 0.75144 0.90248 0.93837 0.90802 0.86391 0.91609 0.91254 0.86363 0.89759 0.77601 0.91142 0.87362 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 13.27 67.79 0.90 -1.84 16 2 C -0.11 -1.94 4.41 -16.48 -0.07 -2.02 16 3 C -0.12 -2.23 9.10 71.23 0.65 -1.59 16 4 C -0.05 -0.67 0.75 -53.67 -0.04 -0.71 16 5 C -0.14 -1.30 7.11 71.98 0.51 -0.79 16 6 C -0.14 -1.70 8.17 71.98 0.59 -1.12 16 7 C 0.52 10.31 6.29 87.66 0.55 10.86 16 8 O -0.57 -16.06 14.42 -3.05 -0.04 -16.10 16 9 N -0.71 -10.80 4.92 -442.51 -2.18 -12.97 16 10 C 0.16 2.56 2.41 44.99 0.11 2.67 16 11 H 0.07 1.43 7.37 -2.39 -0.02 1.41 16 12 C -0.15 -2.10 9.29 71.98 0.67 -1.43 16 13 C -0.10 -1.69 3.49 -10.15 -0.04 -1.73 16 14 C 0.01 0.24 7.51 86.41 0.65 0.89 16 15 N -0.49 -14.22 5.65 -912.44 -5.15 -19.38 16 16 C 0.02 0.60 5.28 85.56 0.45 1.05 16 17 C 0.45 21.13 7.83 87.66 0.69 21.81 16 18 O -0.61 -34.96 16.01 -3.08 -0.05 -35.01 16 19 N -0.59 -28.88 5.09 -306.98 -1.56 -30.44 16 20 C -0.33 -19.62 10.16 84.04 0.85 -18.77 16 21 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 23 N -0.93 -57.11 13.96 21.67 0.30 -56.81 16 24 Si 0.96 39.52 27.74 68.60 1.90 41.42 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 28 C 0.02 0.33 6.57 86.41 0.57 0.89 16 29 H 0.10 1.33 8.05 -2.91 -0.02 1.31 16 30 H 0.12 1.24 5.72 -2.91 -0.02 1.22 16 31 H 0.05 1.30 7.39 -2.39 -0.02 1.28 16 32 H 0.07 1.14 8.07 -2.38 -0.02 1.12 16 33 H 0.05 1.07 6.79 -2.39 -0.02 1.06 16 34 H 0.08 0.50 8.04 -2.39 -0.02 0.48 16 35 H 0.09 0.57 7.28 -2.39 -0.02 0.55 16 36 H 0.06 0.64 7.71 -2.39 -0.02 0.62 16 37 H 0.05 0.77 6.91 -2.39 -0.02 0.76 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.71 7.23 -2.39 -0.02 0.70 16 40 H 0.41 4.23 7.54 -92.71 -0.70 3.54 16 41 H 0.08 0.91 7.43 -2.39 -0.02 0.89 16 42 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.07 1.72 7.29 -2.39 -0.02 1.70 16 46 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.12 3.04 8.08 -2.39 -0.02 3.02 16 48 H 0.08 2.24 7.38 -2.38 -0.02 2.22 16 49 H 0.39 15.64 5.76 -92.71 -0.53 15.10 16 50 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 51 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 52 H 0.09 1.33 7.85 -2.39 -0.02 1.31 16 Total: -1.00 -84.30 412.08 0.35 -83.94 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.37 Total: 37.59 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.50 Total: 7.75 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -8.59 Total: -119.60 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.09 Total: -51.11 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.42 kcal Total: -84.30 0.35 -83.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.474 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds