Wall clock time and date at job start Tue Mar 31 2020 21:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 C 1.53001 * 109.47151 * 120.00085 * 2 1 3 5 5 H 1.09003 * 109.47221 * 296.16818 * 4 2 1 6 6 C 1.50705 * 109.46832 * 176.17257 * 4 2 1 7 7 O 1.21274 * 119.99884 * 263.52006 * 6 4 2 8 8 N 1.34769 * 120.00101 * 83.52438 * 6 4 2 9 9 C 1.46498 * 120.00297 * 184.75095 * 8 6 4 10 10 H 1.09008 * 109.46622 * 34.99915 * 9 8 6 11 11 C 1.52999 * 109.47549 * 275.00179 * 9 8 6 12 12 C 1.53004 * 109.47464 * 154.99747 * 9 8 6 13 13 C 1.53943 * 113.74201 * 278.74723 * 12 9 8 14 14 N 1.47812 * 86.03519 * 222.08407 * 13 12 9 15 15 C 1.36941 * 134.45485 * 204.65043 * 14 13 12 16 16 H 1.08004 * 119.99882 * 179.86770 * 15 14 13 17 17 C 1.38812 * 120.00110 * 359.85804 * 15 14 13 18 18 N 1.31618 * 119.99844 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46974 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47042 * 119.99886 * 19 17 15 22 22 H 1.48493 * 109.47391 * 240.00028 * 19 17 15 23 23 C 1.47572 * 91.05271 * 24.54811 * 14 13 12 24 24 N 1.46497 * 109.47556 * 56.17184 * 4 2 1 25 25 C 1.46757 * 124.34949 * 240.00507 * 24 4 2 26 26 C 1.54482 * 105.47528 * 162.97879 * 25 24 4 27 27 C 1.54624 * 101.76363 * 25.41035 * 26 25 24 28 28 C 1.34743 * 124.29700 * 59.95609 * 24 4 2 29 29 O 1.21283 * 125.12399 * 0.41175 * 28 24 4 30 30 H 1.09000 * 109.47141 * 299.99894 * 1 2 3 31 31 H 1.08994 * 109.47245 * 60.00047 * 1 2 3 32 32 H 1.09010 * 109.46686 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47141 * 240.00106 * 2 1 3 34 34 H 1.09002 * 109.47261 * 185.77208 * 3 2 1 35 35 H 1.09004 * 109.47390 * 305.77524 * 3 2 1 36 36 H 1.09004 * 109.47212 * 65.77593 * 3 2 1 37 37 H 0.97003 * 120.00426 * 4.75230 * 8 6 4 38 38 H 1.09001 * 109.46644 * 299.99713 * 11 9 8 39 39 H 1.09003 * 109.46928 * 59.99681 * 11 9 8 40 40 H 1.08996 * 109.47085 * 179.97438 * 11 9 8 41 41 H 1.09000 * 112.93842 * 50.33638 * 12 9 8 42 42 H 1.08998 * 113.77070 * 336.34236 * 13 12 9 43 43 H 1.09000 * 113.77221 * 107.74204 * 13 12 9 44 44 H 0.96999 * 119.99560 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.77455 * 221.15748 * 23 14 13 46 46 H 1.09001 * 113.87331 * 89.76986 * 23 14 13 47 47 H 1.08996 * 110.25145 * 43.97635 * 25 24 4 48 48 H 1.09008 * 110.31910 * 282.01401 * 25 24 4 49 49 H 1.09000 * 110.96909 * 267.29147 * 26 25 24 50 50 H 1.08997 * 110.97324 * 143.53021 * 26 25 24 51 51 H 1.09005 * 110.48907 * 93.88141 * 27 26 25 52 52 H 1.09004 * 110.49049 * 216.39095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7339 -0.1693 2.1379 6 6 3.5441 -0.8039 1.2027 7 8 4.0837 -1.8075 0.7873 8 7 4.2895 0.2374 1.6226 9 6 5.7472 0.1991 1.4810 10 1 6.0093 -0.3267 0.5629 11 6 6.3570 -0.5314 2.6790 12 6 6.2918 1.6278 1.4237 13 6 6.1784 2.2790 0.0334 14 7 7.5403 2.7985 0.2789 15 6 8.2567 3.8690 -0.1861 16 1 9.2657 4.0354 0.1614 17 6 7.6862 4.7400 -1.1041 18 7 6.4565 4.5372 -1.5273 19 14 8.6637 6.1997 -1.7388 20 1 10.0104 6.2035 -1.1130 21 1 8.8041 6.0978 -3.2137 22 1 7.9540 7.4580 -1.3949 23 6 7.8168 1.7025 1.2276 24 7 1.4780 -2.0733 1.2963 25 6 0.6347 -2.5821 2.3844 26 6 -0.0600 -3.8386 1.8143 27 6 0.9358 -4.2787 0.7164 28 6 1.6686 -3.0084 0.3451 29 8 2.3297 -2.8563 -0.6603 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1251 1.4443 -0.1034 35 1 1.5946 1.9854 -0.8338 36 1 1.7635 1.9256 0.9372 37 1 3.8610 1.0123 2.0187 38 1 6.0948 -0.0055 3.5971 39 1 5.9691 -1.5493 2.7198 40 1 7.4415 -0.5602 2.5734 41 1 5.9222 2.2562 2.2341 42 1 6.1231 1.5610 -0.7848 43 1 5.4153 3.0549 -0.0275 44 1 6.0580 5.1457 -2.1690 45 1 8.3593 2.0188 2.1185 46 1 8.2440 0.8139 0.7627 47 1 -0.1079 -1.8358 2.6666 48 1 1.2477 -2.8480 3.2456 49 1 -1.0292 -3.5870 1.3838 50 1 -0.1627 -4.6084 2.5791 51 1 1.6323 -5.0202 1.1080 52 1 0.4013 -4.6768 -0.1462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276469627.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:59 Heat of formation + Delta-G solvation = -18.261534 kcal Electronic energy + Delta-G solvation = -31263.999167 eV Core-core repulsion = 27265.275169 eV Total energy + Delta-G solvation = -3998.723998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96347 -39.34957 -37.96520 -36.43416 -35.77294 -34.69994 -32.15673 -31.83742 -30.46976 -27.74617 -27.51767 -27.28436 -26.79822 -24.76464 -23.91403 -22.20680 -21.71429 -20.93299 -20.37501 -19.51880 -18.60227 -17.37441 -16.99562 -16.67891 -16.21117 -15.75262 -15.48982 -14.86930 -14.62226 -14.51546 -14.11408 -13.84679 -13.76703 -13.50741 -13.48910 -13.21814 -13.00507 -12.89995 -12.70574 -12.60088 -12.36347 -12.20074 -12.02210 -11.76343 -11.64240 -11.36058 -11.28567 -11.26396 -11.18606 -11.07501 -10.88758 -10.86494 -10.69005 -10.31311 -9.95277 -9.73959 -9.67506 -9.52568 -9.38622 -8.77783 -8.70185 -8.60513 -6.83991 -5.73830 -3.05734 2.58389 2.76250 2.88108 3.40245 3.45603 3.48168 3.52655 4.18831 4.21688 4.47513 4.51220 4.66234 4.71641 4.78743 4.88413 5.07340 5.11627 5.18688 5.22880 5.30671 5.32534 5.34933 5.40264 5.50529 5.56380 5.57237 5.61184 5.68073 5.70358 5.77584 5.85093 5.87328 5.97918 6.05962 6.07626 6.22554 6.29078 6.34693 6.40617 6.44653 6.47020 6.63973 6.72127 6.87503 7.09934 7.26844 7.40306 7.58982 7.75230 8.01121 8.27291 8.50320 9.07725 9.73910 10.63601 11.43210 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.002849 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.130127 B = 9826.646427 C =10640.978719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.155 4.155 4 C 0.150 3.850 5 H 0.103 0.897 6 C 0.500 3.500 7 O -0.514 6.514 8 N -0.718 5.718 9 C 0.153 3.847 10 H 0.085 0.915 11 C -0.156 4.156 12 C -0.146 4.146 13 C 0.172 3.828 14 N -0.613 5.613 15 C -0.221 4.221 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.130 3.870 24 N -0.613 5.613 25 C 0.105 3.895 26 C -0.130 4.130 27 C -0.156 4.156 28 C 0.521 3.479 29 O -0.497 6.497 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.397 0.603 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.252 0.748 45 H 0.043 0.957 46 H 0.034 0.966 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.606 -14.314 12.056 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.213 4.213 4 C 0.043 3.957 5 H 0.121 0.879 6 C 0.284 3.716 7 O -0.388 6.388 8 N -0.370 5.370 9 C 0.048 3.952 10 H 0.103 0.897 11 C -0.215 4.215 12 C -0.166 4.166 13 C 0.047 3.953 14 N -0.339 5.339 15 C -0.349 4.349 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.003 3.997 24 N -0.349 5.349 25 C -0.018 4.018 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.308 3.692 29 O -0.369 6.369 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.119 0.881 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.736 -14.618 10.980 24.786 hybrid contribution 0.367 1.181 -0.161 1.247 sum -16.369 -13.437 10.820 23.782 Atomic orbital electron populations 1.21745 0.94339 1.01542 1.01830 1.21403 0.96441 0.96787 0.97698 1.21959 1.02997 0.94040 1.02287 1.20920 0.90897 0.83077 1.00780 0.87909 1.20744 0.89234 0.83703 0.77942 1.90754 1.73353 1.30296 1.44421 1.46151 1.07699 1.19999 1.63146 1.21055 0.78211 0.96977 0.98965 0.89712 1.22108 1.01183 1.00123 0.98047 1.23809 0.97903 0.93258 1.01626 1.22285 0.89112 0.94148 0.89795 1.46012 1.13389 1.24711 1.49789 1.19069 0.96503 0.99429 1.19900 0.90287 1.24776 0.96816 0.99405 0.99538 1.69827 1.13318 1.38495 1.35082 0.86065 0.78981 0.82339 0.78499 1.20508 1.21782 1.21746 1.22482 0.92639 0.91383 0.93167 1.48040 1.51946 1.12069 1.22847 1.22052 0.93547 0.96299 0.89906 1.22559 0.98522 0.97164 0.98504 1.22328 0.99333 0.97254 1.00722 1.20755 0.80274 0.85313 0.82839 1.90762 1.38572 1.81190 1.26372 0.92761 0.92250 0.92869 0.89149 0.90915 0.91601 0.92516 0.76884 0.92886 0.92900 0.91597 0.89484 0.95689 0.91006 0.93773 0.93839 0.94830 0.90422 0.91358 0.90019 0.89321 0.88059 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.99 37.16 0.33 -0.95 16 2 C -0.10 -1.24 2.29 -90.62 -0.21 -1.45 16 3 C -0.16 -1.85 8.36 37.16 0.31 -1.54 16 4 C 0.15 1.72 2.26 -69.08 -0.16 1.57 16 5 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 6 C 0.50 7.55 6.43 -10.99 -0.07 7.48 16 7 O -0.51 -10.04 13.70 -16.30 -0.22 -10.26 16 8 N -0.72 -9.89 3.88 -53.80 -0.21 -10.10 16 9 C 0.15 2.44 2.35 -67.93 -0.16 2.28 16 10 H 0.08 1.62 7.49 -51.92 -0.39 1.23 16 11 C -0.16 -2.17 9.31 37.16 0.35 -1.83 16 12 C -0.15 -2.63 3.47 -89.69 -0.31 -2.94 16 13 C 0.17 4.03 7.08 -2.84 -0.02 4.01 16 14 N -0.61 -15.91 3.70 -177.72 -0.66 -16.57 16 15 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 16 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.92 -27.44 11.39 55.49 0.63 -26.81 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.13 2.66 7.64 -2.97 -0.02 2.64 16 24 N -0.61 -6.65 1.87 -166.07 -0.31 -6.96 16 25 C 0.11 0.68 7.30 -3.12 -0.02 0.65 16 26 C -0.13 -0.66 7.18 -25.10 -0.18 -0.84 16 27 C -0.16 -1.32 6.85 -26.74 -0.18 -1.50 16 28 C 0.52 7.02 6.71 -10.71 -0.07 6.95 16 29 O -0.50 -9.29 14.73 -16.31 -0.24 -9.53 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.50 7.41 -51.92 -0.38 0.11 16 33 H 0.09 1.43 6.93 -51.93 -0.36 1.07 16 34 H 0.07 1.06 6.67 -51.93 -0.35 0.71 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.40 4.52 8.11 -40.82 -0.33 4.19 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 40 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.03 0.64 7.99 -51.93 -0.41 0.22 16 43 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 49 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -36.98 408.11 -9.84 -46.82 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -9.29 Total: 2.15 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.67 Total: 7.71 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.55 Total: -60.44 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.46 Total: -19.79 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.98 -9.84 -46.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469627.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.560 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds