Wall clock time and date at job start Tue Mar 31 2020 21:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 C 1.53001 * 109.47151 * 120.00085 * 2 1 3 5 5 H 1.09003 * 109.47221 * 296.16818 * 4 2 1 6 6 C 1.50705 * 109.46832 * 176.17257 * 4 2 1 7 7 O 1.21274 * 119.99884 * 263.52006 * 6 4 2 8 8 N 1.34769 * 120.00101 * 83.52438 * 6 4 2 9 9 C 1.46498 * 120.00297 * 184.75095 * 8 6 4 10 10 H 1.09008 * 109.46622 * 34.99915 * 9 8 6 11 11 C 1.52999 * 109.47549 * 275.00179 * 9 8 6 12 12 C 1.53004 * 109.47464 * 154.99747 * 9 8 6 13 13 C 1.53943 * 113.74201 * 278.74723 * 12 9 8 14 14 N 1.47812 * 86.03519 * 222.08407 * 13 12 9 15 15 C 1.36941 * 134.45485 * 204.65043 * 14 13 12 16 16 H 1.08004 * 119.99882 * 179.86770 * 15 14 13 17 17 C 1.38812 * 120.00110 * 359.85804 * 15 14 13 18 18 N 1.31618 * 119.99844 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00057 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46974 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47042 * 119.99886 * 19 17 15 22 22 H 1.48493 * 109.47391 * 240.00028 * 19 17 15 23 23 C 1.47572 * 91.05271 * 24.54811 * 14 13 12 24 24 N 1.46497 * 109.47556 * 56.17184 * 4 2 1 25 25 C 1.46757 * 124.34949 * 240.00507 * 24 4 2 26 26 C 1.54482 * 105.47528 * 162.97879 * 25 24 4 27 27 C 1.54624 * 101.76363 * 25.41035 * 26 25 24 28 28 C 1.34743 * 124.29700 * 59.95609 * 24 4 2 29 29 O 1.21283 * 125.12399 * 0.41175 * 28 24 4 30 30 H 1.09000 * 109.47141 * 299.99894 * 1 2 3 31 31 H 1.08994 * 109.47245 * 60.00047 * 1 2 3 32 32 H 1.09010 * 109.46686 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47141 * 240.00106 * 2 1 3 34 34 H 1.09002 * 109.47261 * 185.77208 * 3 2 1 35 35 H 1.09004 * 109.47390 * 305.77524 * 3 2 1 36 36 H 1.09004 * 109.47212 * 65.77593 * 3 2 1 37 37 H 0.97003 * 120.00426 * 4.75230 * 8 6 4 38 38 H 1.09001 * 109.46644 * 299.99713 * 11 9 8 39 39 H 1.09003 * 109.46928 * 59.99681 * 11 9 8 40 40 H 1.08996 * 109.47085 * 179.97438 * 11 9 8 41 41 H 1.09000 * 112.93842 * 50.33638 * 12 9 8 42 42 H 1.08998 * 113.77070 * 336.34236 * 13 12 9 43 43 H 1.09000 * 113.77221 * 107.74204 * 13 12 9 44 44 H 0.96999 * 119.99560 * 180.02562 * 18 17 15 45 45 H 1.09000 * 113.77455 * 221.15748 * 23 14 13 46 46 H 1.09001 * 113.87331 * 89.76986 * 23 14 13 47 47 H 1.08996 * 110.25145 * 43.97635 * 25 24 4 48 48 H 1.09008 * 110.31910 * 282.01401 * 25 24 4 49 49 H 1.09000 * 110.96909 * 267.29147 * 26 25 24 50 50 H 1.08997 * 110.97324 * 143.53021 * 26 25 24 51 51 H 1.09005 * 110.48907 * 93.88141 * 27 26 25 52 52 H 1.09004 * 110.49049 * 216.39095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7339 -0.1693 2.1379 6 6 3.5441 -0.8039 1.2027 7 8 4.0837 -1.8075 0.7873 8 7 4.2895 0.2374 1.6226 9 6 5.7472 0.1991 1.4810 10 1 6.0093 -0.3267 0.5629 11 6 6.3570 -0.5314 2.6790 12 6 6.2918 1.6278 1.4237 13 6 6.1784 2.2790 0.0334 14 7 7.5403 2.7985 0.2789 15 6 8.2567 3.8690 -0.1861 16 1 9.2657 4.0354 0.1614 17 6 7.6862 4.7400 -1.1041 18 7 6.4565 4.5372 -1.5273 19 14 8.6637 6.1997 -1.7388 20 1 10.0104 6.2035 -1.1130 21 1 8.8041 6.0978 -3.2137 22 1 7.9540 7.4580 -1.3949 23 6 7.8168 1.7025 1.2276 24 7 1.4780 -2.0733 1.2963 25 6 0.6347 -2.5821 2.3844 26 6 -0.0600 -3.8386 1.8143 27 6 0.9358 -4.2787 0.7164 28 6 1.6686 -3.0084 0.3451 29 8 2.3297 -2.8563 -0.6603 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1251 1.4443 -0.1034 35 1 1.5946 1.9854 -0.8338 36 1 1.7635 1.9256 0.9372 37 1 3.8610 1.0123 2.0187 38 1 6.0948 -0.0055 3.5971 39 1 5.9691 -1.5493 2.7198 40 1 7.4415 -0.5602 2.5734 41 1 5.9222 2.2562 2.2341 42 1 6.1231 1.5610 -0.7848 43 1 5.4153 3.0549 -0.0275 44 1 6.0580 5.1457 -2.1690 45 1 8.3593 2.0188 2.1185 46 1 8.2440 0.8139 0.7627 47 1 -0.1079 -1.8358 2.6666 48 1 1.2477 -2.8480 3.2456 49 1 -1.0292 -3.5870 1.3838 50 1 -0.1627 -4.6084 2.5791 51 1 1.6323 -5.0202 1.1080 52 1 0.4013 -4.6768 -0.1462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276469627.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:59 Heat of formation + Delta-G solvation = -42.131871 kcal Electronic energy + Delta-G solvation = -31265.034262 eV Core-core repulsion = 27265.275169 eV Total energy + Delta-G solvation = -3999.759093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.94061 -40.60911 -39.52195 -37.47761 -36.67638 -36.16023 -34.16223 -32.60650 -31.85699 -29.39987 -28.42019 -28.17303 -27.74063 -26.52788 -25.63195 -23.34761 -22.68879 -21.81958 -21.65859 -20.99502 -19.79515 -18.78330 -18.38697 -17.92951 -17.07239 -16.98412 -16.90819 -16.45989 -15.80295 -15.70448 -15.66459 -15.02309 -14.90572 -14.70005 -14.55207 -14.42438 -14.09736 -13.93660 -13.69883 -13.64504 -13.40301 -13.27567 -13.27014 -13.11994 -13.00756 -12.92918 -12.72681 -12.53892 -12.31505 -12.17039 -11.99950 -11.98607 -11.93509 -11.76462 -11.69801 -11.51105 -11.25003 -10.92396 -10.85300 -10.54340 -9.97806 -9.55764 -8.93798 -7.91440 -5.25504 1.43517 1.45313 1.55304 1.58129 1.70979 1.92596 2.44265 2.46462 3.28636 3.35918 3.45866 3.64698 3.71044 3.77287 3.85953 3.90470 3.94584 4.11003 4.20179 4.27588 4.28752 4.36074 4.47644 4.56560 4.59340 4.72024 4.74026 4.74985 4.77516 4.80385 4.83945 4.90085 4.92559 4.97215 4.99249 5.08835 5.14151 5.21550 5.24307 5.28032 5.30080 5.32727 5.38479 5.49238 5.55709 5.63291 5.66702 5.92022 6.26027 6.61919 6.90420 7.27730 7.41014 7.59382 8.55238 9.25285 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.002849 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.130127 B = 9826.646427 C =10640.978719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 C -0.151 4.151 4 C 0.153 3.847 5 H 0.150 0.850 6 C 0.494 3.506 7 O -0.564 6.564 8 N -0.707 5.707 9 C 0.162 3.838 10 H 0.043 0.957 11 C -0.145 4.145 12 C -0.106 4.106 13 C 0.171 3.829 14 N -0.644 5.644 15 C -0.235 4.235 16 H 0.084 0.916 17 C -0.069 4.069 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.297 1.297 22 H -0.287 1.287 23 C 0.129 3.871 24 N -0.611 5.611 25 C 0.096 3.904 26 C -0.114 4.114 27 C -0.154 4.154 28 C 0.502 3.498 29 O -0.567 6.567 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.412 0.588 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.111 0.889 42 H -0.008 1.008 43 H 0.047 0.953 44 H 0.247 0.753 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.116 0.884 51 H 0.103 0.897 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.402 -14.057 15.839 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.118 4.118 3 C -0.209 4.209 4 C 0.045 3.955 5 H 0.167 0.833 6 C 0.280 3.720 7 O -0.442 6.442 8 N -0.360 5.360 9 C 0.056 3.944 10 H 0.062 0.938 11 C -0.203 4.203 12 C -0.126 4.126 13 C 0.046 3.954 14 N -0.370 5.370 15 C -0.364 4.364 16 H 0.102 0.898 17 C -0.262 4.262 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.224 1.224 22 H -0.214 1.214 23 C 0.003 3.997 24 N -0.345 5.345 25 C -0.025 4.025 26 C -0.152 4.152 27 C -0.194 4.194 28 C 0.291 3.709 29 O -0.445 6.445 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.249 0.751 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.010 0.990 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.127 0.873 48 H 0.096 0.904 49 H 0.115 0.885 50 H 0.135 0.865 51 H 0.122 0.878 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.561 -14.360 14.852 27.772 hybrid contribution 0.963 1.061 -1.370 1.983 sum -17.598 -13.299 13.482 25.851 Atomic orbital electron populations 1.21684 0.91614 1.02027 1.03226 1.21286 0.98528 0.96001 0.95962 1.21923 1.00592 0.94466 1.03918 1.20987 0.87998 0.84317 1.02152 0.83284 1.21510 0.91017 0.82890 0.76594 1.90738 1.74598 1.32409 1.46434 1.46006 1.06768 1.20445 1.62774 1.20739 0.79849 0.95185 0.98584 0.93820 1.21996 1.01145 0.99498 0.97645 1.23435 0.96378 0.94238 0.98504 1.22125 0.87960 0.93139 0.92209 1.46464 1.14338 1.25549 1.50655 1.19486 0.96934 1.00209 1.19730 0.89782 1.25654 0.97924 1.02400 1.00203 1.70024 1.14885 1.39488 1.35696 0.85001 0.78234 0.78812 0.77222 1.18865 1.22414 1.21414 1.22669 0.94489 0.89773 0.92722 1.48252 1.51529 1.11349 1.23366 1.22454 0.93761 0.97642 0.88604 1.22617 0.97775 0.97122 0.97662 1.22367 0.99867 0.94790 1.02362 1.21736 0.79627 0.87321 0.82237 1.90720 1.41709 1.82716 1.29354 0.89532 0.92649 0.92804 0.94362 0.94396 0.92224 0.88981 0.75086 0.90146 0.93724 0.91183 0.87074 0.99016 0.93450 0.94359 0.91407 0.94646 0.87257 0.90390 0.88480 0.86518 0.87846 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.99 71.98 0.65 -1.51 16 2 C -0.10 -2.36 2.29 -10.79 -0.02 -2.39 16 3 C -0.15 -3.63 8.36 71.98 0.60 -3.03 16 4 C 0.15 3.31 2.26 44.25 0.10 3.41 16 5 H 0.15 1.83 8.07 -2.39 -0.02 1.81 16 6 C 0.49 15.20 6.43 87.66 0.56 15.76 16 7 O -0.56 -23.37 13.70 17.90 0.25 -23.13 16 8 N -0.71 -19.27 3.88 -442.53 -1.72 -20.99 16 9 C 0.16 5.21 2.35 44.99 0.11 5.32 16 10 H 0.04 1.79 7.49 -2.38 -0.02 1.77 16 11 C -0.14 -3.78 9.31 71.98 0.67 -3.11 16 12 C -0.11 -3.78 3.47 -10.13 -0.04 -3.81 16 13 C 0.17 8.41 7.08 86.44 0.61 9.02 16 14 N -0.64 -33.98 3.70 -716.19 -2.65 -36.63 16 15 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 16 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 18 N -0.95 -58.75 11.39 21.65 0.25 -58.50 16 19 Si 0.98 46.71 29.55 68.60 2.03 48.73 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 C 0.13 5.20 7.64 86.49 0.66 5.86 16 24 N -0.61 -12.40 1.87 -797.72 -1.49 -13.89 16 25 C 0.10 0.86 7.30 86.83 0.63 1.50 16 26 C -0.11 -0.74 7.18 31.65 0.23 -0.51 16 27 C -0.15 -2.45 6.85 30.59 0.21 -2.24 16 28 C 0.50 13.88 6.71 87.85 0.59 14.47 16 29 O -0.57 -23.15 14.73 17.87 0.26 -22.89 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.90 7.41 -2.38 -0.02 0.89 16 33 H 0.04 1.33 6.93 -2.39 -0.02 1.32 16 34 H 0.04 1.17 6.67 -2.39 -0.02 1.15 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.41 8.63 8.11 -92.71 -0.75 7.87 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.26 8.11 -2.39 -0.02 1.24 16 40 H 0.07 1.78 7.52 -2.39 -0.02 1.76 16 41 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 42 H -0.01 -0.44 7.99 -2.39 -0.02 -0.46 16 43 H 0.05 2.54 7.16 -2.39 -0.02 2.52 16 44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 47 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 52 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -89.38 408.11 3.99 -85.39 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.14 Total: 19.36 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.93 Total: 22.55 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -5.61 Total: -130.01 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: 0.51 Total: -46.02 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -89.38 3.99 -85.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469627.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.254 kcal (2) G-P(sol) polarization free energy of solvation -89.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds