Wall clock time and date at job start Tue Mar 31 2020 21:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47020 * 2 1 4 4 C 1.52998 * 109.47428 * 119.99751 * 2 1 3 5 5 H 1.08991 * 109.47303 * 296.66551 * 4 2 1 6 6 C 1.50707 * 109.47297 * 176.66469 * 4 2 1 7 7 O 1.21276 * 120.00069 * 266.18748 * 6 4 2 8 8 N 1.34779 * 119.99838 * 86.18140 * 6 4 2 9 9 C 1.46502 * 119.99694 * 184.83631 * 8 6 4 10 10 H 1.08997 * 109.47199 * 325.00633 * 9 8 6 11 11 C 1.53002 * 109.46764 * 85.00469 * 9 8 6 12 12 C 1.52993 * 109.46875 * 205.00319 * 9 8 6 13 13 C 1.53497 * 114.20744 * 180.02562 * 12 9 8 14 14 N 1.47060 * 87.98738 * 220.34444 * 13 12 9 15 15 C 1.36935 * 136.06002 * 207.08594 * 14 13 12 16 16 H 1.08006 * 119.99676 * 356.94147 * 15 14 13 17 17 C 1.38815 * 120.00436 * 176.94331 * 15 14 13 18 18 N 1.31617 * 119.99951 * 176.14502 * 17 15 14 19 19 Si 1.86802 * 119.99781 * 356.14196 * 17 15 14 20 20 H 1.48498 * 109.47092 * 176.25160 * 19 17 15 21 21 H 1.48499 * 109.46871 * 296.25084 * 19 17 15 22 22 H 1.48497 * 109.47069 * 56.25116 * 19 17 15 23 23 C 1.47069 * 87.88645 * 27.34031 * 14 13 12 24 24 N 1.46501 * 109.46641 * 56.66711 * 4 2 1 25 25 C 1.46763 * 124.34465 * 234.36775 * 24 4 2 26 26 C 1.54479 * 105.47227 * 197.01892 * 25 24 4 27 27 C 1.54631 * 101.76659 * 334.58788 * 26 25 24 28 28 C 1.34415 * 124.35273 * 54.07448 * 24 4 2 29 29 O 1.21284 * 124.94084 * 359.56665 * 28 24 4 30 30 H 1.08994 * 109.47274 * 64.02782 * 1 2 3 31 31 H 1.08997 * 109.46751 * 184.03332 * 1 2 3 32 32 H 1.08997 * 109.46841 * 304.02953 * 1 2 3 33 33 H 1.09000 * 109.47305 * 240.00451 * 2 1 3 34 34 H 1.09006 * 109.46979 * 183.61064 * 3 2 1 35 35 H 1.09003 * 109.46946 * 303.60856 * 3 2 1 36 36 H 1.08995 * 109.46926 * 63.60787 * 3 2 1 37 37 H 0.96995 * 119.99866 * 4.84282 * 8 6 4 38 38 H 1.09000 * 109.46592 * 180.02562 * 11 9 8 39 39 H 1.08996 * 109.46940 * 299.99612 * 11 9 8 40 40 H 1.08996 * 109.47243 * 59.99584 * 11 9 8 41 41 H 1.09011 * 113.41721 * 313.20219 * 12 9 8 42 42 H 1.09001 * 113.46948 * 105.56420 * 13 12 9 43 43 H 1.09003 * 113.51818 * 335.13579 * 13 12 9 44 44 H 0.96993 * 120.00471 * 354.91822 * 18 17 15 45 45 H 1.09000 * 113.46616 * 87.43461 * 23 14 13 46 46 H 1.08997 * 113.46807 * 217.87972 * 23 14 13 47 47 H 1.08994 * 110.24991 * 316.02289 * 25 24 4 48 48 H 1.09006 * 110.24465 * 78.02229 * 25 24 4 49 49 H 1.08997 * 110.97092 * 92.70662 * 26 25 24 50 50 H 1.09000 * 110.97403 * 216.46893 * 26 25 24 51 51 H 1.08994 * 110.48428 * 143.47451 * 27 26 25 52 52 H 1.09000 * 110.48382 * 265.98688 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7264 -0.1740 2.1381 6 6 3.5449 -0.7931 1.2086 7 8 4.0929 -1.7720 0.7479 8 7 4.2815 0.2304 1.6840 9 6 5.7401 0.2080 1.5487 10 1 6.0985 -0.8166 1.6475 11 6 6.1332 0.7556 0.1751 12 6 6.3671 1.0753 2.6420 13 6 7.9006 1.1293 2.6005 14 7 7.8914 1.0497 4.0689 15 6 8.7162 1.4563 5.0836 16 1 9.6578 1.9337 4.8557 17 6 8.3421 1.2549 6.4052 18 7 9.1672 1.5762 7.3789 19 14 6.6676 0.5279 6.8014 20 1 6.5481 0.3310 8.2684 21 1 5.6036 1.4544 6.3380 22 1 6.5200 -0.7794 6.1128 23 6 6.6097 0.3356 3.9679 24 7 1.4872 -2.0773 1.2900 25 6 0.7428 -2.6341 2.4257 26 6 0.7490 -4.1640 2.2121 27 6 0.9195 -4.2677 0.6787 28 6 1.5918 -2.9694 0.2901 29 8 2.1467 -2.7642 -0.7687 30 1 -0.3633 0.4500 -0.9238 31 1 -0.3633 -1.0251 0.0723 32 1 -0.3633 0.5751 0.8517 33 1 1.8934 -0.5138 -0.8900 34 1 3.1281 1.4432 -0.0647 35 1 1.6248 1.9747 -0.8559 36 1 1.7304 1.9373 0.9205 37 1 3.8460 0.9818 2.1159 38 1 7.2184 0.7384 0.0743 39 1 5.6865 0.1376 -0.6037 40 1 5.7748 1.7801 0.0763 41 1 5.8887 2.0488 2.7503 42 1 8.2916 2.0727 2.2194 43 1 8.3536 0.2613 2.1215 44 1 10.0636 1.8843 7.1733 45 1 6.7215 -0.7422 3.8493 46 1 5.9010 0.6027 4.7517 47 1 1.2396 -2.3820 3.3625 48 1 -0.2802 -2.2576 2.4271 49 1 1.5889 -4.6268 2.7302 50 1 -0.1951 -4.6062 2.5303 51 1 1.5500 -5.1189 0.4218 52 1 -0.0519 -4.3529 0.1918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276469628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:04 Heat of formation + Delta-G solvation = -9.356747 kcal Electronic energy + Delta-G solvation = -31272.508958 eV Core-core repulsion = 27274.171101 eV Total energy + Delta-G solvation = -3998.337857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.13219 -39.63764 -38.49511 -36.52090 -36.00110 -35.00064 -32.43027 -31.96523 -30.78565 -27.81363 -27.76419 -27.61682 -26.97741 -25.38595 -23.86330 -22.25278 -21.62585 -21.12457 -20.53915 -19.70086 -18.88029 -17.51610 -17.32467 -17.12534 -16.77826 -16.11695 -15.41170 -15.24042 -14.93841 -14.74370 -14.28524 -13.94397 -13.84619 -13.80082 -13.63256 -13.27990 -13.18494 -13.15038 -12.97079 -12.87287 -12.69188 -12.45099 -12.28934 -11.90046 -11.84366 -11.81934 -11.48911 -11.39315 -11.34304 -11.31124 -11.09407 -10.96409 -10.63493 -10.51274 -10.26158 -9.94939 -9.65242 -9.21016 -9.05348 -8.99965 -8.85763 -8.76674 -7.17035 -6.32098 -3.24035 2.37714 2.64990 2.76855 3.31830 3.36268 3.41929 3.63240 4.09464 4.18346 4.45628 4.52096 4.54845 4.57550 4.60079 4.70794 4.80267 4.88331 4.90885 5.00201 5.11378 5.14590 5.18597 5.32359 5.34776 5.40634 5.44976 5.48097 5.52602 5.53490 5.56589 5.61959 5.67954 5.74853 5.80633 5.88769 5.96295 6.01057 6.01843 6.15589 6.21694 6.24959 6.30371 6.30501 6.40085 6.63008 6.90141 6.98316 7.09130 7.54528 8.12824 8.22232 8.30635 8.96459 9.48859 10.34758 11.19911 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014256 B = 0.003236 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.617619 B = 8651.228286 C = 9466.632225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.154 4.154 4 C 0.149 3.851 5 H 0.105 0.895 6 C 0.501 3.499 7 O -0.515 6.515 8 N -0.721 5.721 9 C 0.153 3.847 10 H 0.089 0.911 11 C -0.158 4.158 12 C -0.139 4.139 13 C 0.135 3.865 14 N -0.629 5.629 15 C -0.302 4.302 16 H 0.082 0.918 17 C -0.026 4.026 18 N -0.936 5.936 19 Si 1.075 2.925 20 H -0.296 1.296 21 H -0.294 1.294 22 H -0.290 1.290 23 C 0.107 3.893 24 N -0.610 5.610 25 C 0.103 3.897 26 C -0.131 4.131 27 C -0.155 4.155 28 C 0.525 3.475 29 O -0.508 6.508 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.398 0.602 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.261 0.739 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.100 0.900 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.613 -5.577 -14.021 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 C -0.212 4.212 4 C 0.042 3.958 5 H 0.123 0.877 6 C 0.284 3.716 7 O -0.388 6.388 8 N -0.374 5.374 9 C 0.048 3.952 10 H 0.107 0.893 11 C -0.216 4.216 12 C -0.159 4.159 13 C 0.008 3.992 14 N -0.357 5.357 15 C -0.428 4.428 16 H 0.100 0.900 17 C -0.224 4.224 18 N -0.579 5.579 19 Si 0.908 3.092 20 H -0.224 1.224 21 H -0.222 1.222 22 H -0.218 1.218 23 C -0.019 4.019 24 N -0.345 5.345 25 C -0.020 4.020 26 C -0.169 4.169 27 C -0.195 4.195 28 C 0.312 3.688 29 O -0.381 6.381 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.119 0.881 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -23.688 -6.447 -13.482 28.008 hybrid contribution 0.966 0.724 -0.875 1.491 sum -22.723 -5.722 -14.357 27.480 Atomic orbital electron populations 1.21743 0.94159 1.01803 1.01848 1.21400 0.96652 0.96358 0.97977 1.21955 1.02153 0.94709 1.02400 1.20932 0.90714 0.83227 1.00967 0.87721 1.20825 0.89442 0.83110 0.78208 1.90750 1.72903 1.31273 1.43910 1.46182 1.07664 1.22885 1.60626 1.20982 0.78604 1.00890 0.94688 0.89330 1.22121 1.02058 1.00885 0.96551 1.23548 0.97951 0.99310 0.95104 1.22242 0.91342 0.98971 0.86636 1.46012 1.23364 1.65033 1.01325 1.20195 1.00920 1.36569 0.85141 0.89979 1.25701 1.05965 1.00249 0.90488 1.70905 1.07623 1.47160 1.32181 0.83650 0.74981 0.75945 0.74591 1.22358 1.22240 1.21776 1.22812 0.89415 0.95508 0.94148 1.47950 1.55720 1.12736 1.18091 1.22120 0.96406 0.93913 0.89593 1.22579 1.03865 0.95048 0.95395 1.22316 1.02750 0.97438 0.97030 1.20711 0.78809 0.85805 0.83473 1.90710 1.42439 1.80598 1.24363 0.92326 0.92705 0.92599 0.88647 0.91610 0.91798 0.92248 0.76794 0.91330 0.92573 0.92534 0.88387 0.93423 0.94278 0.92932 0.93981 0.93540 0.90308 0.90909 0.89839 0.89175 0.88121 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.06 37.16 0.34 -0.70 16 2 C -0.10 -0.99 2.20 -90.62 -0.20 -1.19 16 3 C -0.15 -1.22 8.57 37.16 0.32 -0.90 16 4 C 0.15 1.52 2.26 -69.08 -0.16 1.36 16 5 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 6 C 0.50 6.84 6.35 -10.98 -0.07 6.77 16 7 O -0.51 -9.36 14.25 -12.91 -0.18 -9.55 16 8 N -0.72 -8.83 3.91 -53.81 -0.21 -9.04 16 9 C 0.15 2.19 2.51 -67.93 -0.17 2.02 16 10 H 0.09 1.50 7.26 -51.93 -0.38 1.12 16 11 C -0.16 -2.01 9.29 37.16 0.35 -1.67 16 12 C -0.14 -2.29 3.67 -89.97 -0.33 -2.62 16 13 C 0.14 2.61 7.33 -8.51 -0.06 2.55 16 14 N -0.63 -15.57 3.68 -184.60 -0.68 -16.25 16 15 C -0.30 -8.81 11.09 -15.06 -0.17 -8.97 16 16 H 0.08 2.51 8.05 -52.48 -0.42 2.09 16 17 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 18 N -0.94 -29.80 13.70 55.49 0.76 -29.04 16 19 Si 1.07 27.02 25.01 -169.99 -4.25 22.77 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.29 -6.87 6.69 56.52 0.38 -6.49 16 22 H -0.29 -6.92 6.40 56.52 0.36 -6.56 16 23 C 0.11 2.25 5.47 -8.37 -0.05 2.20 16 24 N -0.61 -6.20 1.87 -166.16 -0.31 -6.52 16 25 C 0.10 0.67 7.30 -3.12 -0.02 0.65 16 26 C -0.13 -0.76 7.18 -25.10 -0.18 -0.94 16 27 C -0.16 -1.24 6.86 -26.74 -0.18 -1.42 16 28 C 0.52 6.51 6.42 -10.86 -0.07 6.44 16 29 O -0.51 -8.52 14.84 -12.91 -0.19 -8.71 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 7.08 -51.93 -0.37 0.07 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 1.25 6.53 -51.93 -0.34 0.91 16 34 H 0.06 0.60 6.67 -51.93 -0.35 0.25 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.40 3.87 8.35 -40.82 -0.34 3.52 16 38 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 1.51 8.14 -51.92 -0.42 1.08 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 44 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 45 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 46 H 0.05 1.01 4.04 -51.93 -0.21 0.80 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -38.00 400.75 -8.96 -46.96 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -9.17 Total: 0.63 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.75 Total: 2.71 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.44 Total: -60.85 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.38 Total: -18.26 kcal Atomic # 14 Polarization: 27.02 SS G_CDS: -4.25 Total: 22.77 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.00 -8.96 -46.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.604 kcal (2) G-P(sol) polarization free energy of solvation -38.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds