Wall clock time and date at job start Tue Mar 31 2020 21:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.52998 * 109.47454 * 119.99536 * 2 1 3 5 5 H 1.08989 * 109.47547 * 297.41187 * 4 2 1 6 6 C 1.50705 * 109.46696 * 57.40987 * 4 2 1 7 7 O 1.21281 * 120.00129 * 111.32683 * 6 4 2 8 8 N 1.34775 * 119.99650 * 291.32625 * 6 4 2 9 9 C 1.46501 * 119.99939 * 176.24438 * 8 6 4 10 10 H 1.08999 * 109.47279 * 324.99598 * 9 8 6 11 11 C 1.53000 * 109.47249 * 85.00167 * 9 8 6 12 12 C 1.53002 * 109.47183 * 204.99613 * 9 8 6 13 13 C 1.53492 * 114.20666 * 179.97438 * 12 9 8 14 14 N 1.47066 * 87.98328 * 87.52371 * 13 12 9 15 15 C 1.36937 * 136.05656 * 207.08125 * 14 13 12 16 16 H 1.08006 * 120.00174 * 7.68702 * 15 14 13 17 17 C 1.38813 * 120.00230 * 187.67768 * 15 14 13 18 18 N 1.31619 * 119.99536 * 7.29276 * 17 15 14 19 19 Si 1.86793 * 120.00530 * 187.28468 * 17 15 14 20 20 H 1.48500 * 109.47287 * 265.03064 * 19 17 15 21 21 H 1.48510 * 109.46984 * 25.02989 * 19 17 15 22 22 H 1.48498 * 109.47456 * 145.02554 * 19 17 15 23 23 C 1.47063 * 87.88702 * 27.34303 * 14 13 12 24 24 N 1.46497 * 109.47472 * 177.40242 * 4 2 1 25 25 C 1.46761 * 124.34691 * 119.72793 * 24 4 2 26 26 C 1.54669 * 105.38144 * 162.86070 * 25 24 4 27 27 C 1.54624 * 101.68328 * 25.76639 * 26 25 24 28 28 C 1.34426 * 124.35350 * 300.03351 * 24 4 2 29 29 O 1.21277 * 124.93597 * 0.38130 * 28 24 4 30 30 H 1.09004 * 109.47219 * 305.61245 * 1 2 3 31 31 H 1.08995 * 109.47431 * 65.60932 * 1 2 3 32 32 H 1.08999 * 109.47514 * 185.61291 * 1 2 3 33 33 H 1.09001 * 109.47063 * 240.00375 * 2 1 3 34 34 H 1.08999 * 109.47166 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47248 * 300.00082 * 3 2 1 36 36 H 1.08993 * 109.47435 * 60.00034 * 3 2 1 37 37 H 0.97002 * 120.00324 * 356.24631 * 8 6 4 38 38 H 1.09005 * 109.46627 * 299.99935 * 11 9 8 39 39 H 1.08999 * 109.47444 * 59.99533 * 11 9 8 40 40 H 1.08999 * 109.47394 * 180.02562 * 11 9 8 41 41 H 1.09007 * 113.41134 * 46.80233 * 12 9 8 42 42 H 1.08994 * 113.47314 * 332.74345 * 13 12 9 43 43 H 1.09001 * 113.52296 * 202.31238 * 13 12 9 44 44 H 0.97000 * 119.99838 * 180.02562 * 18 17 15 45 45 H 1.09001 * 113.46504 * 87.43214 * 23 14 13 46 46 H 1.08992 * 113.46854 * 217.88083 * 23 14 13 47 47 H 1.09002 * 110.24682 * 281.98451 * 25 24 4 48 48 H 1.08993 * 110.24921 * 43.98931 * 25 24 4 49 49 H 1.09001 * 111.18701 * 267.59296 * 26 25 24 50 50 H 1.08997 * 110.82254 * 143.78025 * 26 25 24 51 51 H 1.09005 * 110.48487 * 216.31521 * 27 26 25 52 52 H 1.08992 * 110.48857 * 93.67003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7151 -0.1812 2.1386 6 6 1.4859 -2.1222 1.2818 7 8 2.2248 -3.0705 1.1213 8 7 0.1692 -2.3214 1.4893 9 6 -0.3833 -3.6773 1.4392 10 1 0.1455 -4.2575 0.6830 11 6 -0.2165 -4.3468 2.8048 12 6 -1.8697 -3.6095 1.0828 13 6 -2.5601 -4.9779 1.0001 14 7 -2.8202 -4.8759 2.4440 15 6 -3.0034 -5.7554 3.4774 16 1 -2.8450 -6.8124 3.3215 17 6 -3.3926 -5.2887 4.7254 18 7 -3.7244 -4.0245 4.8811 19 14 -3.4457 -6.4546 6.1839 20 1 -4.8238 -6.9841 6.3444 21 1 -2.5065 -7.5812 5.9515 22 1 -3.0491 -5.7255 7.4152 23 6 -2.8036 -3.4136 2.2884 24 7 3.5036 -0.7756 1.2184 25 6 4.3760 -0.1805 2.2375 26 6 5.7563 -0.8491 2.0372 27 6 5.6988 -1.2445 0.5434 28 6 4.2203 -1.3719 0.2499 29 8 3.7498 -1.9310 -0.7180 30 1 -0.3634 0.5984 0.8355 31 1 -0.3634 0.4244 -0.9359 32 1 -0.3634 -1.0227 0.1005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 -0.4127 -1.5671 1.6718 38 1 0.8425 -4.3951 3.0587 39 1 -0.7453 -3.7667 3.5610 40 1 -0.6271 -5.3558 2.7674 41 1 -2.0838 -2.9497 0.2420 42 1 -1.8831 -5.7906 0.7374 43 1 -3.4663 -4.9721 0.3943 44 1 -3.9960 -3.6982 5.7532 45 1 -3.7739 -2.9944 2.0221 46 1 -2.3338 -2.8936 3.1232 47 1 4.4505 0.8966 2.0881 48 1 3.9940 -0.3982 3.2348 49 1 5.8628 -1.7302 2.6701 50 1 6.5616 -0.1383 2.2219 51 1 6.2033 -2.1971 0.3812 52 1 6.1447 -0.4655 -0.0748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276469629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:09 Heat of formation + Delta-G solvation = 2.401539 kcal Electronic energy + Delta-G solvation = -31595.121247 eV Core-core repulsion = 27597.293268 eV Total energy + Delta-G solvation = -3997.827980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.00829 -39.52960 -38.31251 -36.42729 -35.88456 -34.40473 -32.18399 -31.80164 -29.88806 -27.75473 -27.68207 -27.13922 -26.92740 -24.69986 -24.07652 -22.18347 -21.82386 -21.04567 -20.38387 -19.34917 -18.29898 -17.06292 -16.96156 -16.76099 -16.55252 -15.55213 -15.20868 -14.92254 -14.85555 -14.69503 -14.09568 -13.81253 -13.79766 -13.68390 -13.58078 -13.14179 -12.96182 -12.82569 -12.62992 -12.59385 -12.33958 -12.20303 -11.79470 -11.72803 -11.33405 -11.26800 -11.19327 -11.14403 -11.07028 -10.96653 -10.90188 -10.76183 -10.57137 -10.35544 -9.87365 -9.75707 -9.67632 -9.55238 -9.15644 -8.75248 -8.61871 -8.51608 -6.81715 -5.79375 -3.08721 2.57887 2.84261 2.89082 3.38256 3.44714 3.45962 3.55256 4.21541 4.26290 4.46452 4.55966 4.64111 4.69578 4.78695 4.90732 5.03736 5.13130 5.21555 5.27257 5.30258 5.32949 5.40649 5.43904 5.46619 5.50234 5.58058 5.60545 5.65503 5.71147 5.75789 5.92596 5.96460 6.10948 6.12237 6.15992 6.34247 6.42343 6.45715 6.52239 6.67110 6.74975 6.78094 7.04005 7.10563 7.18536 7.28631 7.47195 7.54722 7.84435 7.96475 8.25532 8.55625 9.03406 9.70054 10.65513 11.39211 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.003067 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.401243 B = 9128.066904 C = 9693.899562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.147 3.853 5 H 0.108 0.892 6 C 0.502 3.498 7 O -0.520 6.520 8 N -0.718 5.718 9 C 0.176 3.824 10 H 0.075 0.925 11 C -0.144 4.144 12 C -0.161 4.161 13 C 0.125 3.875 14 N -0.602 5.602 15 C -0.213 4.213 16 H 0.080 0.920 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.280 1.280 22 H -0.291 1.291 23 C 0.167 3.833 24 N -0.607 5.607 25 C 0.104 3.896 26 C -0.130 4.130 27 C -0.154 4.154 28 C 0.526 3.474 29 O -0.512 6.512 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.400 0.600 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.034 0.966 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.878 14.693 -7.118 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.124 4.124 3 C -0.196 4.196 4 C 0.040 3.960 5 H 0.126 0.874 6 C 0.285 3.715 7 O -0.395 6.395 8 N -0.373 5.373 9 C 0.072 3.928 10 H 0.094 0.906 11 C -0.202 4.202 12 C -0.181 4.181 13 C -0.002 4.002 14 N -0.328 5.328 15 C -0.341 4.341 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.565 5.565 19 Si 0.737 3.263 20 H -0.217 1.217 21 H -0.205 1.205 22 H -0.217 1.217 23 C 0.041 3.959 24 N -0.342 5.342 25 C -0.019 4.019 26 C -0.168 4.168 27 C -0.195 4.195 28 C 0.313 3.687 29 O -0.385 6.385 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.236 0.764 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.118 0.882 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.022 13.563 -7.406 22.260 hybrid contribution -0.661 -0.149 1.092 1.285 sum 15.361 13.414 -6.314 21.349 Atomic orbital electron populations 1.22313 0.93938 1.04176 1.02677 1.21388 0.96616 0.96464 0.97922 1.21766 1.00949 0.94981 1.01922 1.20941 0.79931 0.94390 1.00768 0.87412 1.20638 0.82701 0.91081 0.77049 1.90714 1.57781 1.43063 1.47892 1.46517 1.08171 1.10675 1.71908 1.20553 0.91673 0.81549 0.98993 0.90649 1.22127 0.98765 1.03433 0.95849 1.23382 0.94222 1.00116 1.00416 1.22356 0.95854 0.93860 0.88131 1.45761 1.83600 1.02282 1.01187 1.18883 1.39172 0.88909 0.87088 0.90269 1.24757 1.01042 0.96503 0.97852 1.69844 1.50477 1.13491 1.22704 0.86186 0.77650 0.79915 0.82570 1.21746 1.20516 1.21689 1.22058 0.93920 0.87312 0.92625 1.47894 1.04299 1.56645 1.25359 1.22130 0.90088 0.97418 0.92260 1.22604 0.96549 1.01743 0.95928 1.22307 0.94973 1.04607 0.97584 1.20679 0.89015 0.76887 0.82106 1.90711 1.76481 1.41692 1.29663 0.92072 0.91757 0.90092 0.89134 0.92813 0.92313 0.92543 0.76368 0.95329 0.91353 0.89596 0.91146 0.94051 0.94830 0.93791 0.95492 0.91964 0.91007 0.90445 0.89865 0.89331 0.88198 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 8.12 37.15 0.30 -1.37 16 2 C -0.10 -1.12 2.41 -90.62 -0.22 -1.34 16 3 C -0.14 -1.14 9.06 37.16 0.34 -0.81 16 4 C 0.15 1.74 2.31 -69.08 -0.16 1.58 16 5 H 0.11 1.02 8.07 -51.94 -0.42 0.60 16 6 C 0.50 8.03 6.64 -10.98 -0.07 7.96 16 7 O -0.52 -10.57 14.19 -13.28 -0.19 -10.76 16 8 N -0.72 -10.93 3.48 -53.80 -0.19 -11.12 16 9 C 0.18 3.17 2.73 -67.93 -0.19 2.99 16 10 H 0.08 1.47 7.63 -51.93 -0.40 1.08 16 11 C -0.14 -2.99 8.06 37.16 0.30 -2.69 16 12 C -0.16 -2.89 4.25 -89.97 -0.38 -3.27 16 13 C 0.12 2.52 7.86 -8.51 -0.07 2.45 16 14 N -0.60 -14.66 2.16 -184.61 -0.40 -15.06 16 15 C -0.21 -5.76 9.57 -15.06 -0.14 -5.91 16 16 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 17 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 18 N -0.92 -26.34 11.88 55.49 0.66 -25.68 16 19 Si 0.91 21.90 29.56 -169.99 -5.02 16.88 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.17 3.66 6.21 -8.37 -0.05 3.61 16 24 N -0.61 -6.94 2.03 -166.05 -0.34 -7.28 16 25 C 0.10 0.77 7.31 -3.02 -0.02 0.75 16 26 C -0.13 -0.84 7.19 -25.00 -0.18 -1.02 16 27 C -0.15 -1.37 6.86 -26.75 -0.18 -1.55 16 28 C 0.53 7.18 6.68 -10.86 -0.07 7.11 16 29 O -0.51 -9.33 15.08 -13.28 -0.20 -9.53 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.92 4.81 -51.93 -0.25 0.67 16 33 H 0.09 1.26 6.69 -51.93 -0.35 0.91 16 34 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 5.19 6.48 -40.82 -0.26 4.93 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.57 6.31 -51.93 -0.33 1.24 16 40 H 0.09 1.97 5.93 -51.93 -0.31 1.66 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.47 6.24 -51.93 -0.32 1.15 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -34.86 398.53 -9.49 -44.35 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -8.92 Total: 3.95 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -0.90 Total: 8.24 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.26 Total: -59.14 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.39 Total: -20.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.86 -9.49 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.749 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds