Wall clock time and date at job start Tue Mar 31 2020 21:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.52998 * 109.47454 * 119.99536 * 2 1 3 5 5 H 1.08989 * 109.47547 * 297.41187 * 4 2 1 6 6 C 1.50705 * 109.46696 * 57.40987 * 4 2 1 7 7 O 1.21281 * 120.00129 * 111.32683 * 6 4 2 8 8 N 1.34775 * 119.99650 * 291.32625 * 6 4 2 9 9 C 1.46501 * 119.99939 * 176.24438 * 8 6 4 10 10 H 1.08999 * 109.47279 * 324.99598 * 9 8 6 11 11 C 1.53000 * 109.47249 * 85.00167 * 9 8 6 12 12 C 1.53002 * 109.47183 * 204.99613 * 9 8 6 13 13 C 1.53492 * 114.20666 * 179.97438 * 12 9 8 14 14 N 1.47066 * 87.98328 * 87.52371 * 13 12 9 15 15 C 1.36937 * 136.05656 * 207.08125 * 14 13 12 16 16 H 1.08006 * 120.00174 * 7.68702 * 15 14 13 17 17 C 1.38813 * 120.00230 * 187.67768 * 15 14 13 18 18 N 1.31619 * 119.99536 * 7.29276 * 17 15 14 19 19 Si 1.86793 * 120.00530 * 187.28468 * 17 15 14 20 20 H 1.48500 * 109.47287 * 265.03064 * 19 17 15 21 21 H 1.48510 * 109.46984 * 25.02989 * 19 17 15 22 22 H 1.48498 * 109.47456 * 145.02554 * 19 17 15 23 23 C 1.47063 * 87.88702 * 27.34303 * 14 13 12 24 24 N 1.46497 * 109.47472 * 177.40242 * 4 2 1 25 25 C 1.46761 * 124.34691 * 119.72793 * 24 4 2 26 26 C 1.54669 * 105.38144 * 162.86070 * 25 24 4 27 27 C 1.54624 * 101.68328 * 25.76639 * 26 25 24 28 28 C 1.34426 * 124.35350 * 300.03351 * 24 4 2 29 29 O 1.21277 * 124.93597 * 0.38130 * 28 24 4 30 30 H 1.09004 * 109.47219 * 305.61245 * 1 2 3 31 31 H 1.08995 * 109.47431 * 65.60932 * 1 2 3 32 32 H 1.08999 * 109.47514 * 185.61291 * 1 2 3 33 33 H 1.09001 * 109.47063 * 240.00375 * 2 1 3 34 34 H 1.08999 * 109.47166 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47248 * 300.00082 * 3 2 1 36 36 H 1.08993 * 109.47435 * 60.00034 * 3 2 1 37 37 H 0.97002 * 120.00324 * 356.24631 * 8 6 4 38 38 H 1.09005 * 109.46627 * 299.99935 * 11 9 8 39 39 H 1.08999 * 109.47444 * 59.99533 * 11 9 8 40 40 H 1.08999 * 109.47394 * 180.02562 * 11 9 8 41 41 H 1.09007 * 113.41134 * 46.80233 * 12 9 8 42 42 H 1.08994 * 113.47314 * 332.74345 * 13 12 9 43 43 H 1.09001 * 113.52296 * 202.31238 * 13 12 9 44 44 H 0.97000 * 119.99838 * 180.02562 * 18 17 15 45 45 H 1.09001 * 113.46504 * 87.43214 * 23 14 13 46 46 H 1.08992 * 113.46854 * 217.88083 * 23 14 13 47 47 H 1.09002 * 110.24682 * 281.98451 * 25 24 4 48 48 H 1.08993 * 110.24921 * 43.98931 * 25 24 4 49 49 H 1.09001 * 111.18701 * 267.59296 * 26 25 24 50 50 H 1.08997 * 110.82254 * 143.78025 * 26 25 24 51 51 H 1.09005 * 110.48487 * 216.31521 * 27 26 25 52 52 H 1.08992 * 110.48857 * 93.67003 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.7151 -0.1812 2.1386 6 6 1.4859 -2.1222 1.2818 7 8 2.2248 -3.0705 1.1213 8 7 0.1692 -2.3214 1.4893 9 6 -0.3833 -3.6773 1.4392 10 1 0.1455 -4.2575 0.6830 11 6 -0.2165 -4.3468 2.8048 12 6 -1.8697 -3.6095 1.0828 13 6 -2.5601 -4.9779 1.0001 14 7 -2.8202 -4.8759 2.4440 15 6 -3.0034 -5.7554 3.4774 16 1 -2.8450 -6.8124 3.3215 17 6 -3.3926 -5.2887 4.7254 18 7 -3.7244 -4.0245 4.8811 19 14 -3.4457 -6.4546 6.1839 20 1 -4.8238 -6.9841 6.3444 21 1 -2.5065 -7.5812 5.9515 22 1 -3.0491 -5.7255 7.4152 23 6 -2.8036 -3.4136 2.2884 24 7 3.5036 -0.7756 1.2184 25 6 4.3760 -0.1805 2.2375 26 6 5.7563 -0.8491 2.0372 27 6 5.6988 -1.2445 0.5434 28 6 4.2203 -1.3719 0.2499 29 8 3.7498 -1.9310 -0.7180 30 1 -0.3634 0.5984 0.8355 31 1 -0.3634 0.4244 -0.9359 32 1 -0.3634 -1.0227 0.1005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 -0.4127 -1.5671 1.6718 38 1 0.8425 -4.3951 3.0587 39 1 -0.7453 -3.7667 3.5610 40 1 -0.6271 -5.3558 2.7674 41 1 -2.0838 -2.9497 0.2420 42 1 -1.8831 -5.7906 0.7374 43 1 -3.4663 -4.9721 0.3943 44 1 -3.9960 -3.6982 5.7532 45 1 -3.7739 -2.9944 2.0221 46 1 -2.3338 -2.8936 3.1232 47 1 4.4505 0.8966 2.0881 48 1 3.9940 -0.3982 3.2348 49 1 5.8628 -1.7302 2.6701 50 1 6.5616 -0.1383 2.2219 51 1 6.2033 -2.1971 0.3812 52 1 6.1447 -0.4655 -0.0748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276469629.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:08 Heat of formation + Delta-G solvation = -18.120813 kcal Electronic energy + Delta-G solvation = -31596.011163 eV Core-core repulsion = 27597.293268 eV Total energy + Delta-G solvation = -3998.717895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04024 -40.91605 -39.74579 -37.45701 -36.79029 -35.86732 -34.15896 -32.58031 -31.40755 -29.63108 -28.41468 -28.04721 -27.77681 -26.44132 -25.86388 -23.52353 -22.75477 -21.87093 -21.73090 -20.62291 -19.65779 -18.67740 -18.15569 -17.84920 -17.47349 -16.90164 -16.87408 -16.48829 -16.05247 -15.79912 -15.67431 -15.17870 -14.87548 -14.57259 -14.50522 -14.48424 -14.15435 -13.78502 -13.71336 -13.60748 -13.53573 -13.25621 -13.04579 -13.00305 -12.91418 -12.75424 -12.59328 -12.42199 -12.34411 -12.13174 -12.10674 -11.95526 -11.91295 -11.72358 -11.65804 -11.51956 -11.06955 -10.84002 -10.71879 -10.57864 -9.92412 -9.60709 -8.79222 -7.88880 -5.17177 1.44991 1.46071 1.54407 1.58460 1.65428 1.97450 2.37443 2.48957 3.34821 3.43295 3.54070 3.65134 3.67679 3.76057 3.78486 3.89743 3.94158 4.09983 4.20410 4.29104 4.34104 4.36230 4.52022 4.62698 4.68397 4.68770 4.75326 4.81820 4.83290 4.86326 4.89705 4.97409 5.00726 5.00799 5.07748 5.09403 5.11564 5.21919 5.26004 5.26843 5.35979 5.41053 5.48652 5.53027 5.60738 5.64018 5.71989 5.96538 6.23914 6.59330 6.96386 7.24264 7.36227 7.64267 8.66687 9.29698 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016338 B = 0.003067 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.401243 B = 9128.066904 C = 9693.899562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.148 3.852 5 H 0.141 0.859 6 C 0.496 3.504 7 O -0.568 6.568 8 N -0.707 5.707 9 C 0.186 3.814 10 H 0.064 0.936 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.121 3.879 14 N -0.628 5.628 15 C -0.217 4.217 16 H 0.076 0.924 17 C -0.056 4.056 18 N -0.945 5.945 19 Si 0.963 3.037 20 H -0.289 1.289 21 H -0.274 1.274 22 H -0.294 1.294 23 C 0.170 3.830 24 N -0.608 5.608 25 C 0.096 3.904 26 C -0.120 4.120 27 C -0.150 4.150 28 C 0.507 3.493 29 O -0.572 6.572 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.413 0.587 38 H 0.020 0.980 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.247 0.753 45 H 0.021 0.979 46 H 0.041 0.959 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.126 0.874 51 H 0.092 0.908 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.865 17.137 -6.916 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.117 4.117 3 C -0.189 4.189 4 C 0.040 3.960 5 H 0.158 0.842 6 C 0.282 3.718 7 O -0.446 6.446 8 N -0.362 5.362 9 C 0.081 3.919 10 H 0.082 0.918 11 C -0.182 4.182 12 C -0.148 4.148 13 C -0.005 4.005 14 N -0.354 5.354 15 C -0.345 4.345 16 H 0.094 0.906 17 C -0.250 4.250 18 N -0.594 5.594 19 Si 0.793 3.207 20 H -0.217 1.217 21 H -0.199 1.199 22 H -0.221 1.221 23 C 0.045 3.955 24 N -0.341 5.341 25 C -0.025 4.025 26 C -0.158 4.158 27 C -0.190 4.190 28 C 0.296 3.704 29 O -0.451 6.451 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.253 0.747 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.059 0.941 47 H 0.123 0.877 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.144 0.856 51 H 0.111 0.889 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.013 16.049 -7.192 24.469 hybrid contribution -0.944 -0.942 0.978 1.654 sum 16.069 15.107 -6.214 22.914 Atomic orbital electron populations 1.22293 0.93061 1.03388 1.04164 1.21311 0.97305 0.97572 0.95545 1.21716 1.00874 0.92983 1.03284 1.21069 0.80549 0.91624 1.02720 0.84178 1.21512 0.82241 0.92564 0.75474 1.90694 1.58901 1.45068 1.49952 1.46365 1.08495 1.09794 1.71571 1.20224 0.91892 0.82974 0.96793 0.91837 1.21870 0.97501 1.01905 0.96908 1.23127 0.92864 0.99215 0.99594 1.22541 0.96671 0.95246 0.86034 1.46007 1.83532 1.03238 1.02638 1.19123 1.37852 0.89354 0.88209 0.90617 1.25400 1.01731 0.97858 0.99982 1.69976 1.51917 1.14801 1.22695 0.85284 0.77494 0.78336 0.79601 1.21650 1.19877 1.22065 1.21997 0.94232 0.85918 0.93400 1.48124 1.04384 1.55956 1.25647 1.22498 0.89594 0.99081 0.91348 1.22654 0.97327 1.02229 0.93590 1.22353 0.91566 1.05221 0.99890 1.21587 0.91200 0.76024 0.81581 1.90666 1.77944 1.44305 1.32149 0.89678 0.91001 0.92038 0.92962 0.92916 0.91787 0.90305 0.74728 0.96070 0.93572 0.92006 0.87454 0.93751 0.93235 0.94395 0.96171 0.94054 0.87721 0.89856 0.90842 0.85604 0.88945 0.85743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.12 71.98 0.58 -2.35 16 2 C -0.10 -1.95 2.41 -10.80 -0.03 -1.98 16 3 C -0.13 -1.77 9.06 71.98 0.65 -1.12 16 4 C 0.15 3.27 2.31 44.25 0.10 3.37 16 5 H 0.14 2.18 8.07 -2.39 -0.02 2.16 16 6 C 0.50 15.85 6.64 87.66 0.58 16.43 16 7 O -0.57 -23.83 14.19 14.98 0.21 -23.62 16 8 N -0.71 -21.15 3.48 -442.53 -1.54 -22.69 16 9 C 0.19 6.73 2.73 44.99 0.12 6.85 16 10 H 0.06 2.52 7.63 -2.39 -0.02 2.50 16 11 C -0.12 -5.28 8.06 71.98 0.58 -4.70 16 12 C -0.13 -4.46 4.25 -10.37 -0.04 -4.51 16 13 C 0.12 4.79 7.86 83.18 0.65 5.44 16 14 N -0.63 -30.78 2.16 -737.98 -1.59 -32.37 16 15 C -0.22 -11.90 9.57 84.03 0.80 -11.09 16 16 H 0.08 4.09 7.84 -2.91 -0.02 4.06 16 17 C -0.06 -3.12 5.49 84.86 0.47 -2.65 16 18 N -0.95 -55.04 11.88 21.65 0.26 -54.79 16 19 Si 0.96 45.63 29.56 68.60 2.03 47.66 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 C 0.17 7.44 6.21 83.27 0.52 7.96 16 24 N -0.61 -13.03 2.03 -797.86 -1.62 -14.65 16 25 C 0.10 1.12 7.31 86.90 0.64 1.75 16 26 C -0.12 -1.21 7.19 31.72 0.23 -0.99 16 27 C -0.15 -2.46 6.86 30.58 0.21 -2.25 16 28 C 0.51 13.83 6.68 87.89 0.59 14.42 16 29 O -0.57 -21.88 15.08 14.99 0.23 -21.66 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.29 4.81 -2.39 -0.01 1.28 16 33 H 0.05 1.48 6.69 -2.39 -0.02 1.46 16 34 H 0.05 0.73 7.68 -2.39 -0.02 0.71 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.41 10.11 6.48 -92.71 -0.60 9.51 16 38 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.05 2.16 6.31 -2.39 -0.02 2.15 16 40 H 0.06 2.92 5.93 -2.39 -0.01 2.91 16 41 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 42 H 0.04 1.73 8.12 -2.39 -0.02 1.71 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 45 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 1.98 6.24 -2.39 -0.01 1.97 16 47 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 52 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -80.67 398.53 4.93 -75.74 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.31 Total: 21.77 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.65 Total: 24.60 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -4.50 Total: -124.50 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: 0.44 Total: -45.27 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -80.67 4.93 -75.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469629.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.620 kcal (2) G-P(sol) polarization free energy of solvation -80.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds