Wall clock time and date at job start Tue Mar 31 2020 20:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47372 * 2 1 4 4 N 1.46506 * 109.46959 * 119.99593 * 2 1 3 5 5 C 1.34768 * 120.00197 * 274.99960 * 4 2 1 6 6 O 1.21287 * 120.00339 * 0.02562 * 5 4 2 7 7 C 1.50704 * 120.00391 * 179.97438 * 5 4 2 8 8 C 1.52990 * 109.47494 * 179.97438 * 7 5 4 9 9 C 1.53004 * 117.50195 * 243.75110 * 8 7 5 10 10 C 1.53005 * 117.50044 * 175.08997 * 8 7 5 11 11 C 1.52997 * 109.47080 * 239.99586 * 2 1 3 12 12 C 1.53114 * 109.52307 * 65.00158 * 11 2 1 13 13 C 1.53037 * 109.31211 * 182.35784 * 12 11 2 14 14 N 1.46929 * 109.47910 * 59.15772 * 13 12 11 15 15 C 1.46900 * 110.98461 * 174.18240 * 14 13 12 16 16 C 1.50705 * 109.47243 * 294.23045 * 15 14 13 17 17 O 1.21293 * 119.99527 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99915 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99573 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99726 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99508 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00383 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99480 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47474 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46773 * 120.00353 * 23 21 19 26 26 H 1.48503 * 109.47097 * 239.99921 * 23 21 19 27 27 C 1.46850 * 111.22205 * 298.28247 * 14 13 12 28 28 C 1.53037 * 109.52028 * 61.74456 * 27 14 13 29 29 H 1.08997 * 109.47384 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46822 * 300.00304 * 1 2 3 31 31 H 1.08996 * 109.46819 * 60.00233 * 1 2 3 32 32 H 0.97007 * 119.99778 * 94.99739 * 4 2 1 33 33 H 1.08994 * 109.47062 * 300.00736 * 7 5 4 34 34 H 1.09004 * 109.46666 * 60.00135 * 7 5 4 35 35 H 1.09004 * 115.55178 * 29.41784 * 8 7 5 36 36 H 1.09005 * 117.49753 * 359.97438 * 9 8 7 37 37 H 1.08999 * 117.50194 * 145.02122 * 9 8 7 38 38 H 1.09000 * 117.49885 * 214.98153 * 10 8 7 39 39 H 1.08998 * 117.49815 * 0.02562 * 10 8 7 40 40 H 1.09006 * 109.52082 * 185.13036 * 11 2 1 41 41 H 1.09002 * 109.50377 * 302.31909 * 12 11 2 42 42 H 1.09003 * 109.50316 * 62.39904 * 12 11 2 43 43 H 1.08994 * 109.46612 * 179.21753 * 13 12 11 44 44 H 1.09007 * 109.46083 * 299.18512 * 13 12 11 45 45 H 1.09001 * 109.47343 * 54.22849 * 15 14 13 46 46 H 1.08999 * 109.47204 * 174.23004 * 15 14 13 47 47 H 0.96997 * 120.00302 * 359.97438 * 18 16 15 48 48 H 0.96998 * 120.00238 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.46198 * 301.72747 * 27 14 13 50 50 H 1.08999 * 109.45191 * 181.75464 * 27 14 13 51 51 H 1.08997 * 109.50150 * 180.88044 * 28 27 14 52 52 H 1.08997 * 109.53578 * 60.77667 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1585 2.4117 7 6 2.6488 -0.7287 3.5879 8 6 2.7010 0.2546 4.7588 9 6 4.0733 0.5652 5.3600 10 6 3.0772 -0.3027 6.1332 11 6 2.0400 -0.7213 -1.2492 12 6 1.6356 0.0684 -2.4970 13 6 2.0966 -0.6870 -3.7455 14 7 1.4807 -2.0208 -3.7665 15 6 1.7903 -2.7236 -5.0188 16 6 1.1408 -2.0039 -6.1726 17 8 0.4841 -1.0042 -5.9714 18 7 1.2888 -2.4718 -7.4279 19 6 0.6974 -1.8173 -8.4775 20 1 0.1127 -0.9271 -8.2983 21 6 0.8504 -2.2993 -9.7717 22 7 1.5622 -3.3822 -9.9897 23 14 0.0452 -1.4072 -11.2018 24 1 -0.6940 -0.2236 -10.6940 25 1 1.0897 -0.9642 -12.1600 26 1 -0.8996 -2.3243 -11.8886 27 6 1.8924 -2.8148 -2.6018 28 6 1.4253 -2.1220 -1.3197 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1528 33 1 1.9760 -1.5504 3.8327 34 1 3.6480 -1.1212 3.3987 35 1 1.9711 1.0636 4.7263 36 1 4.9389 0.0686 4.9215 37 1 4.2460 1.5782 5.7233 38 1 2.5950 0.1398 7.0048 39 1 3.2879 -1.3698 6.2030 40 1 3.1262 -0.8020 -1.2052 41 1 0.5518 0.1824 -2.5202 42 1 2.1046 1.0521 -2.4730 43 1 1.7977 -0.1338 -4.6358 44 1 3.1818 -0.7886 -3.7285 45 1 2.8702 -2.7454 -5.1658 46 1 1.4100 -3.7438 -4.9665 47 1 1.8136 -3.2715 -7.5887 48 1 1.6687 -3.7189 -10.8931 49 1 2.9784 -2.9064 -2.5903 50 1 1.4449 -3.8069 -2.6623 51 1 1.7446 -2.7035 -0.4548 52 1 0.3382 -2.0425 -1.3236 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279055867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:21 Heat of formation + Delta-G solvation = -80.261345 kcal Electronic energy + Delta-G solvation = -29179.125236 eV Core-core repulsion = 25177.712725 eV Total energy + Delta-G solvation = -4001.412511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.25352 -40.51627 -39.45059 -38.01161 -36.87988 -35.85676 -34.05663 -33.23629 -31.72549 -31.52106 -29.72376 -28.56816 -26.58127 -25.06207 -24.21829 -23.21982 -22.78759 -21.73775 -20.99915 -20.90675 -20.06383 -19.85265 -18.27733 -17.74252 -17.13047 -16.78838 -16.59004 -16.39433 -16.24712 -15.94466 -15.63215 -15.48936 -15.30914 -15.06282 -14.89320 -14.66965 -14.29358 -14.07089 -13.88064 -13.57577 -13.46843 -13.32968 -13.11334 -12.86717 -12.80817 -12.65963 -12.42853 -12.38315 -12.37729 -12.29929 -12.11395 -11.83169 -11.66990 -11.52419 -11.29888 -11.27878 -11.09296 -10.94110 -10.68021 -10.22452 -10.03790 -9.96932 -9.11377 -8.45503 -5.93673 1.36585 1.41758 1.55705 1.71858 2.08196 2.21394 2.29317 2.82976 2.95124 3.21654 3.42068 3.65043 3.78837 3.79978 3.81750 3.92665 4.07137 4.19298 4.24296 4.27721 4.34561 4.38100 4.44602 4.53058 4.54724 4.58267 4.59773 4.65862 4.68833 4.78040 4.81889 4.82385 4.84024 4.93942 4.99686 5.03747 5.08025 5.11174 5.25303 5.26044 5.28536 5.30261 5.37681 5.42430 5.54499 5.61331 5.94444 6.14882 6.34970 6.63074 6.64424 7.15240 7.35063 7.59266 8.15593 8.72158 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.038976 B = 0.001699 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.225839 B =16474.729867 C =16803.973297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.064 0.936 4 N -0.713 5.713 5 C 0.509 3.491 6 O -0.588 6.588 7 C -0.102 4.102 8 C -0.160 4.160 9 C -0.186 4.186 10 C -0.165 4.165 11 C -0.082 4.082 12 C -0.102 4.102 13 C 0.057 3.943 14 N -0.533 5.533 15 C 0.058 3.942 16 C 0.441 3.559 17 O -0.613 6.613 18 N -0.576 5.576 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.053 3.947 28 C -0.107 4.107 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.415 0.585 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.030 0.970 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.098 0.902 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 -2.767 28.423 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.082 0.918 4 N -0.365 5.365 5 C 0.298 3.702 6 O -0.469 6.469 7 C -0.141 4.141 8 C -0.179 4.179 9 C -0.223 4.223 10 C -0.202 4.202 11 C -0.101 4.101 12 C -0.140 4.140 13 C -0.071 4.071 14 N -0.259 5.259 15 C -0.073 4.073 16 C 0.228 3.772 17 O -0.499 6.499 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.074 4.074 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.128 0.872 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.116 0.884 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.536 -1.320 28.447 29.011 hybrid contribution 0.686 -0.108 -1.444 1.602 sum 6.222 -1.428 27.003 27.747 Atomic orbital electron populations 1.22209 0.95389 1.02896 1.01369 1.20725 0.94026 0.96246 0.83903 0.91771 1.46026 1.66855 1.14715 1.08927 1.21234 0.76464 0.86936 0.85592 1.90688 1.52010 1.18484 1.85684 1.21256 1.04758 0.98355 0.89714 1.22008 0.99948 1.01710 0.94193 1.23137 0.93267 1.01252 1.04630 1.23092 1.02545 1.00642 0.93912 1.21357 1.00649 0.95673 0.92377 1.21530 1.01694 0.98012 0.92758 1.22093 0.95254 0.90345 0.99376 1.61501 1.60362 1.02956 1.01054 1.21710 0.98724 0.98365 0.88500 1.20856 0.84997 0.86927 0.84399 1.90467 1.45561 1.29040 1.84866 1.41949 1.47051 1.27056 1.05324 1.19680 1.29891 1.10046 0.86429 0.90445 1.25992 0.97564 0.97089 1.00570 1.69672 1.40375 1.22805 1.23364 0.84899 0.78095 0.78055 0.77453 1.19936 1.19674 1.19606 1.22238 0.98585 0.97129 0.89445 1.21720 1.01587 0.94429 0.96710 0.90697 0.93916 0.92028 0.74730 0.86020 0.86428 0.89394 0.87671 0.89510 0.88585 0.86823 0.89952 0.91903 0.91432 0.92443 0.95171 0.91854 0.87156 0.77077 0.91376 0.93930 0.89555 0.88387 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.75 71.98 0.63 -2.59 16 2 C 0.16 2.90 2.36 44.99 0.11 3.01 16 3 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 4 N -0.71 -9.76 5.01 -442.53 -2.22 -11.98 16 5 C 0.51 9.05 7.79 87.66 0.68 9.73 16 6 O -0.59 -16.49 15.23 -3.05 -0.05 -16.54 16 7 C -0.10 -1.01 5.98 29.85 0.18 -0.83 16 8 C -0.16 -2.22 5.41 -10.79 -0.06 -2.28 16 9 C -0.19 -2.19 10.18 30.62 0.31 -1.88 16 10 C -0.17 -1.54 10.26 30.62 0.31 -1.23 16 11 C -0.08 -1.47 2.18 -10.71 -0.02 -1.49 16 12 C -0.10 -2.59 5.18 30.64 0.16 -2.43 16 13 C 0.06 1.81 5.11 86.31 0.44 2.25 16 14 N -0.53 -16.39 4.40 -900.69 -3.96 -20.36 16 15 C 0.06 1.97 5.45 85.56 0.47 2.44 16 16 C 0.44 20.92 7.46 87.66 0.65 21.58 16 17 O -0.61 -33.81 13.90 -3.07 -0.04 -33.86 16 18 N -0.58 -29.58 5.29 -306.98 -1.62 -31.20 16 19 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16 23 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.05 1.08 5.46 86.33 0.47 1.55 16 28 C -0.11 -1.70 4.80 30.65 0.15 -1.55 16 29 H 0.07 1.30 6.30 -2.39 -0.02 1.29 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.37 6.52 -2.39 -0.02 1.35 16 32 H 0.41 2.89 7.24 -92.70 -0.67 2.21 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.12 0.63 7.87 -2.38 -0.02 0.61 16 35 H 0.09 1.76 7.31 -2.38 -0.02 1.75 16 36 H 0.10 0.97 8.03 -2.38 -0.02 0.95 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.06 1.81 6.47 -2.39 -0.02 1.80 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 2.37 5.78 -2.39 -0.01 2.35 16 44 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 46 H 0.11 3.25 7.99 -2.39 -0.02 3.23 16 47 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 48 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 49 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.09 1.57 8.01 -2.39 -0.02 1.55 16 51 H 0.10 0.85 6.87 -2.39 -0.02 0.83 16 52 H 0.07 1.33 6.22 -2.39 -0.01 1.31 16 Total: -1.00 -74.74 406.26 -0.29 -75.03 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.47 Total: 35.08 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.76 Total: 8.00 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -7.52 Total: -112.96 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.74 -0.29 -75.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279055867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds