Wall clock time and date at job start Tue Mar 31 2020 20:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.64179 * 2 1 4 4 C 1.54331 * 110.71896 * 123.13938 * 2 1 3 5 5 N 1.47018 * 107.26712 * 140.73334 * 4 2 1 6 6 C 1.34780 * 125.64626 * 181.02103 * 5 4 2 7 7 O 1.21279 * 120.00121 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99952 * 0.02800 * 6 5 4 9 9 C 1.53003 * 109.47357 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47187 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47023 * 180.02562 * 10 9 8 12 12 C 1.53000 * 117.49997 * 185.00174 * 11 10 9 13 13 C 1.53002 * 60.02940 * 252.49592 * 12 11 10 14 14 C 1.47425 * 108.70846 * 1.28914 * 5 4 2 15 15 C 1.55137 * 104.71629 * 335.54994 * 14 5 4 16 16 H 1.08997 * 111.19286 * 279.19357 * 15 14 5 17 17 N 1.46903 * 110.93463 * 155.29224 * 15 14 5 18 18 C 1.46897 * 111.00083 * 92.95641 * 17 15 14 19 19 C 1.50707 * 109.47052 * 179.97438 * 18 17 15 20 20 O 1.21293 * 119.99739 * 0.02562 * 19 18 17 21 21 N 1.34770 * 119.99648 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99538 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00371 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00005 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99821 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00068 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47352 * 89.99928 * 26 24 22 28 28 H 1.48502 * 109.46896 * 210.00169 * 26 24 22 29 29 H 1.48506 * 109.47150 * 329.99744 * 26 24 22 30 30 H 1.09003 * 109.46948 * 298.31324 * 1 2 3 31 31 H 1.08995 * 109.46909 * 58.31332 * 1 2 3 32 32 H 1.09000 * 109.46922 * 178.31597 * 1 2 3 33 33 H 1.09000 * 109.87914 * 21.31548 * 4 2 1 34 34 H 1.09001 * 110.00741 * 260.22387 * 4 2 1 35 35 H 1.09005 * 109.47493 * 59.99612 * 8 6 5 36 36 H 1.09001 * 109.46952 * 299.99818 * 8 6 5 37 37 H 1.08998 * 109.46793 * 59.99852 * 9 8 6 38 38 H 1.08996 * 109.46794 * 300.00284 * 9 8 6 39 39 H 1.08994 * 109.46971 * 59.99889 * 10 9 8 40 40 H 1.09001 * 109.47173 * 300.00014 * 10 9 8 41 41 H 1.09007 * 115.55004 * 330.66846 * 11 10 9 42 42 H 1.09002 * 117.49833 * 359.97438 * 12 11 10 43 43 H 1.09002 * 117.49953 * 144.99738 * 12 11 10 44 44 H 1.09000 * 117.49996 * 107.50493 * 13 12 11 45 45 H 1.08999 * 117.49664 * 252.51862 * 13 12 11 46 46 H 1.08991 * 110.36781 * 94.47871 * 14 5 4 47 47 H 1.09000 * 110.36561 * 216.81200 * 14 5 4 48 48 H 1.00905 * 110.99811 * 329.00090 * 17 15 14 49 49 H 1.08999 * 109.47110 * 299.99827 * 18 17 15 50 50 H 1.09005 * 109.46818 * 60.00015 * 18 17 15 51 51 H 0.97000 * 120.00348 * 359.97438 * 21 19 18 52 52 H 0.96994 * 119.99921 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7891 1.2087 5 7 3.2470 -1.5461 0.7427 6 6 3.9957 -2.3767 1.4952 7 8 4.9439 -2.9513 1.0037 8 6 3.6546 -2.5914 2.9473 9 6 4.6525 -3.5723 3.5660 10 6 4.3064 -3.7898 5.0404 11 6 5.3047 -4.7702 5.6593 12 6 5.0592 -5.2108 7.1038 13 6 6.2046 -4.2486 6.7824 14 6 3.4707 -1.2413 -0.6822 15 6 2.0828 -0.7949 -1.2124 16 1 1.4514 -1.6547 -1.4365 17 7 2.2246 0.0719 -2.3899 18 6 2.1625 -0.7117 -3.6309 19 6 2.3107 0.2094 -4.8145 20 8 2.4543 1.4013 -4.6411 21 7 2.2835 -0.2912 -6.0655 22 6 2.4188 0.5467 -7.1422 23 1 2.5467 1.6079 -6.9879 24 6 2.3903 0.0307 -8.4320 25 7 2.2331 -1.2605 -8.6198 26 14 2.5739 1.1723 -9.8990 27 1 4.0113 1.3014 -10.2491 28 1 1.8306 0.6138 -11.0569 29 1 2.0256 2.5095 -9.5573 30 1 -0.3633 0.4874 0.9048 31 1 -0.3633 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0302 33 1 1.3140 -1.4753 1.5782 34 1 2.3706 -0.1010 2.0011 35 1 2.6470 -2.9996 3.0274 36 1 3.7041 -1.6398 3.4766 37 1 5.6601 -3.1644 3.4860 38 1 4.6025 -4.5237 3.0365 39 1 3.2988 -4.1974 5.1208 40 1 4.3567 -2.8381 5.5696 41 1 5.7287 -5.5045 4.9743 42 1 4.1867 -4.8019 7.6133 43 1 5.3218 -6.2349 7.3691 44 1 6.0854 -3.2069 7.0804 45 1 7.2205 -4.6398 6.8359 46 1 4.1970 -0.4356 -0.7883 47 1 3.8102 -2.1315 -1.2118 48 1 3.0779 0.6084 -2.3433 49 1 2.9685 -1.4454 -3.6380 50 1 1.2028 -1.2254 -3.6886 51 1 2.1690 -1.2444 -6.2040 52 1 2.2136 -1.6207 -9.5202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281430761.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:35 Heat of formation + Delta-G solvation = -85.338730 kcal Electronic energy + Delta-G solvation = -28384.157076 eV Core-core repulsion = 24382.524393 eV Total energy + Delta-G solvation = -4001.632683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31482 -40.17923 -39.18621 -38.47822 -36.22104 -35.56030 -34.72714 -33.49093 -33.23162 -30.62324 -28.96194 -27.55588 -27.19635 -25.77736 -23.72878 -23.20581 -22.62583 -21.59303 -21.33996 -20.96750 -20.11345 -19.89807 -18.18265 -17.75741 -17.45511 -17.04680 -16.60147 -16.48284 -16.31854 -15.98932 -15.70408 -15.35410 -15.27963 -14.98066 -14.77491 -14.37168 -14.25240 -14.04807 -13.74758 -13.51993 -13.36584 -13.31965 -13.16599 -13.01233 -12.91768 -12.83989 -12.62522 -12.42556 -12.35337 -12.12705 -12.09457 -11.96418 -11.85589 -11.78267 -11.62746 -11.51407 -11.13426 -10.88034 -10.70394 -10.35425 -10.02652 -9.75594 -9.36651 -8.47437 -5.96390 1.37618 1.41559 1.54386 1.59255 1.89414 2.03946 2.28769 2.86873 2.94092 3.19709 3.32631 3.50143 3.61938 3.70477 3.79870 3.92617 4.04122 4.07413 4.17462 4.19366 4.23907 4.28557 4.32153 4.40178 4.43429 4.52241 4.56932 4.65193 4.71568 4.77037 4.78276 4.81232 4.81796 4.88468 4.91547 4.95599 5.09025 5.12407 5.20723 5.25957 5.28036 5.35309 5.35839 5.40421 5.50569 5.51624 5.86821 6.06597 6.28564 6.49313 6.58521 7.11309 7.11461 7.54810 8.09647 8.69911 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.001623 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.349912 B =17248.940641 C =18022.680291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 H 0.084 0.916 4 C 0.105 3.895 5 N -0.617 5.617 6 C 0.516 3.484 7 O -0.595 6.595 8 C -0.125 4.125 9 C -0.098 4.098 10 C -0.079 4.079 11 C -0.166 4.166 12 C -0.177 4.177 13 C -0.187 4.187 14 C 0.076 3.924 15 C 0.085 3.915 16 H 0.100 0.900 17 N -0.658 5.658 18 C 0.063 3.937 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.346 0.654 49 H 0.061 0.939 50 H 0.108 0.892 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -6.511 31.044 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.017 4.017 5 N -0.350 5.350 6 C 0.307 3.693 7 O -0.476 6.476 8 C -0.164 4.164 9 C -0.136 4.136 10 C -0.117 4.117 11 C -0.185 4.185 12 C -0.214 4.214 13 C -0.224 4.224 14 C -0.050 4.050 15 C -0.026 4.026 16 H 0.118 0.882 17 N -0.289 5.289 18 C -0.069 4.069 19 C 0.226 3.774 20 O -0.508 6.508 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.166 0.834 49 H 0.079 0.921 50 H 0.126 0.874 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.970 -6.006 30.747 31.390 hybrid contribution 1.395 -0.529 -1.472 2.095 sum -0.575 -6.535 29.275 30.001 Atomic orbital electron populations 1.21644 0.92299 1.02440 1.02535 1.22180 0.97583 0.99292 0.91620 0.89756 1.22430 0.86740 0.95269 0.97258 1.48555 1.30939 1.44860 1.10663 1.21310 0.80981 0.76999 0.89975 1.90700 1.31078 1.50444 1.75352 1.21712 1.02706 1.03198 0.88778 1.21259 0.98262 0.98543 0.95567 1.21129 0.98395 0.98559 0.93574 1.22403 1.02223 1.02312 0.91528 1.23035 1.00617 1.00021 0.97734 1.23123 0.95961 1.00022 1.03330 1.23011 0.99007 1.00233 0.82724 1.22994 0.93989 0.95470 0.90150 0.88173 1.60181 1.44509 1.24551 0.99611 1.21607 1.03288 0.93945 0.88046 1.20814 0.82409 0.89390 0.84823 1.90493 1.56178 1.18121 1.86016 1.41933 1.64082 1.10320 1.04655 1.19685 1.49014 0.92352 0.85410 0.90215 1.26046 0.96270 0.97907 1.00994 1.69675 1.49769 1.12533 1.24136 0.84924 0.78551 0.77879 0.76962 1.19736 1.19519 1.19655 0.90452 0.93342 0.91851 0.88466 0.88867 0.86201 0.86431 0.93188 0.92984 0.90196 0.90594 0.88893 0.87835 0.88705 0.88193 0.89143 0.92140 0.92418 0.83422 0.92090 0.87415 0.77020 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.14 71.98 0.66 -1.20 16 2 C -0.09 -1.41 3.23 -9.60 -0.03 -1.45 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.10 1.25 6.08 86.73 0.53 1.78 16 5 N -0.62 -12.14 3.32 -811.34 -2.70 -14.83 16 6 C 0.52 11.49 7.85 87.66 0.69 12.18 16 7 O -0.59 -19.39 16.24 -3.03 -0.05 -19.44 16 8 C -0.12 -1.51 4.89 29.85 0.15 -1.37 16 9 C -0.10 -1.46 4.46 30.59 0.14 -1.32 16 10 C -0.08 -0.78 5.50 30.59 0.17 -0.62 16 11 C -0.17 -2.00 5.74 -10.77 -0.06 -2.07 16 12 C -0.18 -1.73 10.25 30.60 0.31 -1.42 16 13 C -0.19 -2.06 10.18 30.62 0.31 -1.75 16 14 C 0.08 1.81 6.51 86.93 0.57 2.38 16 15 C 0.09 1.86 2.85 46.38 0.13 1.99 16 16 H 0.10 2.09 7.73 -2.39 -0.02 2.07 16 17 N -0.66 -19.58 6.04 -487.99 -2.95 -22.53 16 18 C 0.06 2.14 6.03 85.56 0.52 2.66 16 19 C 0.44 20.75 7.82 87.66 0.69 21.44 16 20 O -0.62 -34.18 15.78 -3.07 -0.05 -34.22 16 21 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 22 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -49.99 13.05 21.67 0.28 -49.70 16 26 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.10 0.73 7.82 -2.39 -0.02 0.71 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.59 7.88 -2.39 -0.02 0.58 16 41 H 0.09 1.31 8.08 -2.38 -0.02 1.29 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 0.95 8.03 -2.39 -0.02 0.94 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.55 7.76 -2.39 -0.02 1.53 16 47 H 0.06 1.60 8.03 -2.39 -0.02 1.58 16 48 H 0.35 11.11 7.89 -89.69 -0.71 10.40 16 49 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.11 3.23 8.09 -2.38 -0.02 3.21 16 51 H 0.40 19.45 7.90 -92.71 -0.73 18.71 16 52 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -74.26 424.86 0.45 -73.81 By element: Atomic # 1 Polarization: 40.71 SS G_CDS: -0.53 Total: 40.17 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.04 Total: 12.72 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -6.98 Total: -118.21 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.10 Total: -53.67 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.26 0.45 -73.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281430761.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.524 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds