Wall clock time and date at job start Tue Mar 31 2020 20:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47140 * 2 1 4 4 N 1.46497 * 109.47068 * 239.99694 * 2 1 3 5 5 C 1.34773 * 119.99710 * 85.00611 * 4 2 1 6 6 O 1.21279 * 120.00558 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99806 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.60440 * 294.46797 * 7 5 4 9 9 C 1.53352 * 109.60384 * 54.79461 * 7 5 4 10 10 C 1.53063 * 108.42395 * 52.22493 * 9 7 5 11 11 C 1.50170 * 109.89250 * 48.90392 * 10 9 7 12 12 O 1.21284 * 118.24654 * 162.43661 * 11 10 9 13 13 N 1.33357 * 123.51139 * 342.41609 * 11 10 9 14 14 C 1.45758 * 124.10370 * 2.21975 * 13 11 10 15 15 C 1.53000 * 109.46730 * 119.99867 * 2 1 3 16 16 C 1.53043 * 109.46169 * 300.00126 * 15 2 1 17 17 C 1.53194 * 109.31180 * 178.61688 * 16 15 2 18 18 N 1.46924 * 108.77675 * 54.63642 * 17 16 15 19 19 C 1.36932 * 120.63423 * 126.36847 * 18 17 16 20 20 H 1.07998 * 119.99886 * 332.24087 * 19 18 17 21 21 C 1.38817 * 120.00266 * 152.24237 * 19 18 17 22 22 N 1.31619 * 120.00045 * 334.92471 * 21 19 18 23 23 Si 1.86801 * 119.99846 * 154.92192 * 21 19 18 24 24 H 1.48502 * 109.47051 * 60.00270 * 23 21 19 25 25 H 1.48506 * 109.46829 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47298 * 299.99908 * 23 21 19 27 27 C 1.46927 * 118.73867 * 306.63850 * 18 17 16 28 28 C 1.52771 * 109.00463 * 53.31306 * 27 18 17 29 29 H 1.08995 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47162 * 300.00040 * 1 2 3 31 31 H 1.09004 * 109.46941 * 60.00049 * 1 2 3 32 32 H 0.96996 * 120.00180 * 265.00272 * 4 2 1 33 33 H 1.09003 * 109.46785 * 60.00128 * 8 7 5 34 34 H 1.08992 * 109.47568 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47321 * 300.00274 * 8 7 5 36 36 H 1.09007 * 109.67116 * 171.96226 * 9 7 5 37 37 H 1.08996 * 109.67205 * 292.45164 * 9 7 5 38 38 H 1.09008 * 109.39901 * 169.03060 * 10 9 7 39 39 H 1.09001 * 109.40422 * 288.76859 * 10 9 7 40 40 H 0.97000 * 117.95054 * 182.22913 * 13 11 10 41 41 H 1.08994 * 109.30029 * 220.61626 * 14 13 11 42 42 H 1.08998 * 109.29932 * 101.23971 * 14 13 11 43 43 H 1.09002 * 109.46101 * 59.97604 * 15 2 1 44 44 H 1.08996 * 109.49840 * 58.66015 * 16 15 2 45 45 H 1.09003 * 109.49312 * 298.56283 * 16 15 2 46 46 H 1.08997 * 109.58784 * 294.84237 * 17 16 15 47 47 H 1.09001 * 109.70077 * 174.49043 * 17 16 15 48 48 H 0.97002 * 119.99726 * 354.69953 * 22 21 19 49 49 H 1.08998 * 109.59477 * 173.14382 * 27 18 17 50 50 H 1.09002 * 109.58849 * 293.57342 * 27 18 17 51 51 H 1.09010 * 109.56219 * 185.55590 * 28 27 18 52 52 H 1.08998 * 109.35847 * 65.50009 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0183 -2.3570 6 8 1.8584 1.1583 -2.4117 7 6 2.6500 -0.7286 -3.5873 8 6 4.1024 -1.1597 -3.3736 9 6 1.7818 -1.9629 -3.8598 10 6 0.3148 -1.5268 -3.8836 11 6 0.1535 -0.3244 -4.7687 12 8 -0.9601 -0.0444 -5.1592 13 7 1.1691 0.4521 -5.1481 14 6 2.5615 0.2081 -4.7928 15 6 2.0400 -0.7212 1.2493 16 6 1.5296 0.0004 2.4987 17 6 2.0134 -0.7443 3.7470 18 7 3.4751 -0.8771 3.6817 19 6 4.2615 -0.4510 4.7185 20 1 3.9237 0.3509 5.3583 21 6 5.4929 -1.0496 4.9474 22 7 5.7101 -2.2833 4.5436 23 14 6.8417 -0.1041 5.8284 24 1 6.3723 0.2805 7.1838 25 1 8.0497 -0.9597 5.9466 26 1 7.1755 1.1187 5.0547 27 6 4.0776 -1.4703 2.4801 28 6 3.5704 -0.7225 1.2482 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 4.1595 -1.8327 -2.5181 34 1 4.4638 -1.6735 -4.2643 35 1 4.7186 -0.2804 -3.1858 36 1 2.0516 -2.3960 -4.8231 37 1 1.9335 -2.6996 -3.0710 38 1 -0.2993 -2.3424 -4.2654 39 1 -0.0053 -1.2772 -2.8720 40 1 0.9687 1.2281 -5.6945 41 1 3.0425 1.1554 -4.5492 42 1 3.0753 -0.2458 -5.6403 43 1 1.6762 -1.7487 1.2493 44 1 0.4399 0.0215 2.4870 45 1 1.9137 1.0205 2.5119 46 1 1.5577 -1.7338 3.7817 47 1 1.7370 -0.1832 4.6397 48 1 4.9873 -2.8009 4.1555 49 1 5.1629 -1.3861 2.5357 50 1 3.7937 -2.5204 2.4093 51 1 3.9331 -1.2162 0.3465 52 1 3.9352 0.3043 1.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284722958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:06 Heat of formation + Delta-G solvation = -74.771924 kcal Electronic energy + Delta-G solvation = -31438.632054 eV Core-core repulsion = 27437.457582 eV Total energy + Delta-G solvation = -4001.174472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.43648 -39.54472 -38.28311 -36.70156 -35.55351 -34.04815 -32.89313 -31.76300 -30.85071 -30.45408 -28.72031 -26.64761 -25.48578 -24.72682 -24.08043 -22.66591 -22.20232 -21.14352 -20.51999 -19.53579 -18.80488 -17.47440 -17.41312 -16.71939 -16.48317 -16.10593 -15.93608 -14.98662 -14.72956 -14.43593 -14.34741 -14.21564 -13.82346 -13.70454 -13.55674 -13.52228 -13.28281 -13.18472 -12.96813 -12.87474 -12.59062 -12.45873 -12.41392 -11.83143 -11.74511 -11.66047 -11.55026 -11.43209 -11.21864 -10.84950 -10.71645 -10.43773 -10.28206 -10.10272 -10.04199 -10.00938 -9.85128 -9.67873 -9.32587 -9.28572 -9.05799 -8.39101 -6.90244 -6.09879 -3.25095 2.43890 2.48677 2.97758 3.06562 3.47800 3.51001 3.68761 3.96050 4.08157 4.21247 4.33773 4.57206 4.58641 4.84077 4.86139 4.90809 5.08589 5.11334 5.15720 5.17882 5.22935 5.27738 5.31866 5.36165 5.44207 5.47791 5.48654 5.57367 5.62154 5.70381 5.73206 5.85319 5.92799 6.01935 6.13962 6.16720 6.30520 6.38731 6.47499 6.51154 6.52265 6.60626 6.70031 6.80133 7.03936 7.08533 7.15312 7.40261 7.98970 7.99072 8.10000 8.55715 9.10014 9.82777 10.27520 11.19073 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002783 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.078910 B =10059.362042 C =10696.107874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.086 0.914 4 N -0.716 5.716 5 C 0.522 3.478 6 O -0.533 6.533 7 C -0.100 4.100 8 C -0.139 4.139 9 C -0.112 4.112 10 C -0.143 4.143 11 C 0.523 3.477 12 O -0.562 6.562 13 N -0.709 5.709 14 C 0.133 3.867 15 C -0.083 4.083 16 C -0.126 4.126 17 C 0.148 3.852 18 N -0.599 5.599 19 C -0.349 4.349 20 H 0.055 0.945 21 C -0.024 4.024 22 N -0.916 5.916 23 Si 1.063 2.937 24 H -0.293 1.293 25 H -0.285 1.285 26 H -0.293 1.293 27 C 0.151 3.849 28 C -0.127 4.127 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.401 0.599 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.015 0.985 47 H 0.055 0.945 48 H 0.268 0.732 49 H 0.078 0.922 50 H 0.014 0.986 51 H 0.048 0.952 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -0.606 -19.014 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.104 0.896 4 N -0.367 5.367 5 C 0.307 3.693 6 O -0.409 6.409 7 C -0.103 4.103 8 C -0.197 4.197 9 C -0.150 4.150 10 C -0.183 4.183 11 C 0.310 3.690 12 O -0.441 6.441 13 N -0.360 5.360 14 C 0.008 3.992 15 C -0.103 4.103 16 C -0.166 4.166 17 C 0.022 3.978 18 N -0.323 5.323 19 C -0.478 4.478 20 H 0.073 0.927 21 C -0.226 4.226 22 N -0.556 5.556 23 Si 0.893 3.107 24 H -0.220 1.220 25 H -0.211 1.211 26 H -0.221 1.221 27 C 0.025 3.975 28 C -0.166 4.166 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.236 0.764 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.096 0.904 50 H 0.032 0.968 51 H 0.067 0.933 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.988 0.134 -18.559 19.218 hybrid contribution -1.516 -0.042 -0.547 1.612 sum -6.504 0.092 -19.106 20.183 Atomic orbital electron populations 1.22216 0.95596 1.01905 1.02392 1.21134 0.93537 0.97586 0.83591 0.89618 1.46091 1.66931 1.14032 1.09632 1.20221 0.77581 0.87208 0.84289 1.90723 1.49640 1.15753 1.84801 1.21226 0.98571 0.96635 0.93895 1.21790 0.91969 1.02572 1.03369 1.21792 0.92993 0.96102 1.04134 1.21730 0.98308 0.96865 1.01366 1.20037 0.84079 0.84473 0.80458 1.90755 1.24221 1.72779 1.56369 1.45260 1.06992 1.29636 1.54104 1.21238 0.82467 1.00262 0.95184 1.21317 0.96909 0.99049 0.92987 1.22072 0.98878 1.00071 0.95550 1.20877 0.85681 0.96346 0.94897 1.44098 1.00002 1.73021 1.15171 1.19973 1.02759 1.15206 1.09876 0.92729 1.25827 1.00136 0.96121 1.00526 1.70792 1.36814 1.06678 1.41365 0.83550 0.76434 0.75100 0.75635 1.21980 1.21094 1.22078 1.20838 0.98897 0.93209 0.84517 1.22024 0.93851 1.01656 0.99087 0.92625 0.91082 0.92721 0.76693 0.90957 0.90811 0.91226 0.89660 0.89651 0.87633 0.88064 0.76368 0.89393 0.90731 0.91521 0.92515 0.92091 0.96757 0.92663 0.92103 0.90408 0.96831 0.93316 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.13 37.16 0.34 -1.59 16 2 C 0.15 1.86 2.16 -67.93 -0.15 1.71 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 N -0.72 -7.52 4.11 -53.81 -0.22 -7.74 16 5 C 0.52 5.82 4.70 -10.99 -0.05 5.76 16 6 O -0.53 -8.04 15.24 5.56 0.08 -7.95 16 7 C -0.10 -0.74 0.65 -155.52 -0.10 -0.84 16 8 C -0.14 -0.82 8.45 37.16 0.31 -0.51 16 9 C -0.11 -0.68 4.73 -26.52 -0.13 -0.80 16 10 C -0.14 -1.24 5.50 -28.11 -0.15 -1.40 16 11 C 0.52 6.20 7.44 -11.87 -0.09 6.11 16 12 O -0.56 -9.03 17.78 5.55 0.10 -8.93 16 13 N -0.71 -6.82 5.11 -61.39 -0.31 -7.13 16 14 C 0.13 0.98 5.42 -4.48 -0.02 0.96 16 15 C -0.08 -1.21 1.79 -90.58 -0.16 -1.37 16 16 C -0.13 -2.04 5.05 -26.61 -0.13 -2.17 16 17 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 18 N -0.60 -14.47 2.85 -172.58 -0.49 -14.97 16 19 C -0.35 -9.58 9.48 -15.06 -0.14 -9.72 16 20 H 0.05 1.52 7.94 -52.49 -0.42 1.10 16 21 C -0.02 -0.67 4.68 -17.43 -0.08 -0.76 16 22 N -0.92 -26.81 12.43 55.49 0.69 -26.12 16 23 Si 1.06 24.89 29.99 -169.99 -5.10 19.79 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 3.33 4.67 -3.93 -0.02 3.31 16 28 C -0.13 -2.16 5.21 -26.83 -0.14 -2.30 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.83 6.40 -51.93 -0.33 0.49 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 3.40 7.51 -40.82 -0.31 3.09 16 33 H 0.07 0.43 7.98 -51.93 -0.41 0.01 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 37 H 0.08 0.39 7.56 -51.93 -0.39 0.00 16 38 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.10 0.99 7.36 -51.93 -0.38 0.60 16 40 H 0.40 3.64 8.80 -40.82 -0.36 3.28 16 41 H 0.09 0.71 7.72 -51.93 -0.40 0.31 16 42 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.78 6.36 -51.93 -0.33 0.45 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 48 H 0.27 7.87 6.71 -40.82 -0.27 7.59 16 49 H 0.08 1.96 6.33 -51.93 -0.33 1.63 16 50 H 0.01 0.30 7.87 -51.93 -0.41 -0.10 16 51 H 0.05 0.71 7.40 -51.92 -0.38 0.32 16 52 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -34.78 395.39 -9.01 -43.80 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.98 Total: 3.95 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.74 Total: -0.65 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.34 Total: -55.97 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.18 Total: -16.89 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.78 -9.01 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284722958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.973 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds