Wall clock time and date at job start Tue Mar 31 2020 20:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47140 * 2 1 4 4 N 1.46497 * 109.47068 * 239.99694 * 2 1 3 5 5 C 1.34773 * 119.99710 * 85.00611 * 4 2 1 6 6 O 1.21279 * 120.00558 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99806 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.60440 * 294.46797 * 7 5 4 9 9 C 1.53352 * 109.60384 * 54.79461 * 7 5 4 10 10 C 1.53063 * 108.42395 * 52.22493 * 9 7 5 11 11 C 1.50170 * 109.89250 * 48.90392 * 10 9 7 12 12 O 1.21284 * 118.24654 * 162.43661 * 11 10 9 13 13 N 1.33357 * 123.51139 * 342.41609 * 11 10 9 14 14 C 1.45758 * 124.10370 * 2.21975 * 13 11 10 15 15 C 1.53000 * 109.46730 * 119.99867 * 2 1 3 16 16 C 1.53043 * 109.46169 * 300.00126 * 15 2 1 17 17 C 1.53194 * 109.31180 * 178.61688 * 16 15 2 18 18 N 1.46924 * 108.77675 * 54.63642 * 17 16 15 19 19 C 1.36932 * 120.63423 * 126.36847 * 18 17 16 20 20 H 1.07998 * 119.99886 * 332.24087 * 19 18 17 21 21 C 1.38817 * 120.00266 * 152.24237 * 19 18 17 22 22 N 1.31619 * 120.00045 * 334.92471 * 21 19 18 23 23 Si 1.86801 * 119.99846 * 154.92192 * 21 19 18 24 24 H 1.48502 * 109.47051 * 60.00270 * 23 21 19 25 25 H 1.48506 * 109.46829 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47298 * 299.99908 * 23 21 19 27 27 C 1.46927 * 118.73867 * 306.63850 * 18 17 16 28 28 C 1.52771 * 109.00463 * 53.31306 * 27 18 17 29 29 H 1.08995 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47162 * 300.00040 * 1 2 3 31 31 H 1.09004 * 109.46941 * 60.00049 * 1 2 3 32 32 H 0.96996 * 120.00180 * 265.00272 * 4 2 1 33 33 H 1.09003 * 109.46785 * 60.00128 * 8 7 5 34 34 H 1.08992 * 109.47568 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47321 * 300.00274 * 8 7 5 36 36 H 1.09007 * 109.67116 * 171.96226 * 9 7 5 37 37 H 1.08996 * 109.67205 * 292.45164 * 9 7 5 38 38 H 1.09008 * 109.39901 * 169.03060 * 10 9 7 39 39 H 1.09001 * 109.40422 * 288.76859 * 10 9 7 40 40 H 0.97000 * 117.95054 * 182.22913 * 13 11 10 41 41 H 1.08994 * 109.30029 * 220.61626 * 14 13 11 42 42 H 1.08998 * 109.29932 * 101.23971 * 14 13 11 43 43 H 1.09002 * 109.46101 * 59.97604 * 15 2 1 44 44 H 1.08996 * 109.49840 * 58.66015 * 16 15 2 45 45 H 1.09003 * 109.49312 * 298.56283 * 16 15 2 46 46 H 1.08997 * 109.58784 * 294.84237 * 17 16 15 47 47 H 1.09001 * 109.70077 * 174.49043 * 17 16 15 48 48 H 0.97002 * 119.99726 * 354.69953 * 22 21 19 49 49 H 1.08998 * 109.59477 * 173.14382 * 27 18 17 50 50 H 1.09002 * 109.58849 * 293.57342 * 27 18 17 51 51 H 1.09010 * 109.56219 * 185.55590 * 28 27 18 52 52 H 1.08998 * 109.35847 * 65.50009 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0183 -2.3570 6 8 1.8584 1.1583 -2.4117 7 6 2.6500 -0.7286 -3.5873 8 6 4.1024 -1.1597 -3.3736 9 6 1.7818 -1.9629 -3.8598 10 6 0.3148 -1.5268 -3.8836 11 6 0.1535 -0.3244 -4.7687 12 8 -0.9601 -0.0444 -5.1592 13 7 1.1691 0.4521 -5.1481 14 6 2.5615 0.2081 -4.7928 15 6 2.0400 -0.7212 1.2493 16 6 1.5296 0.0004 2.4987 17 6 2.0134 -0.7443 3.7470 18 7 3.4751 -0.8771 3.6817 19 6 4.2615 -0.4510 4.7185 20 1 3.9237 0.3509 5.3583 21 6 5.4929 -1.0496 4.9474 22 7 5.7101 -2.2833 4.5436 23 14 6.8417 -0.1041 5.8284 24 1 6.3723 0.2805 7.1838 25 1 8.0497 -0.9597 5.9466 26 1 7.1755 1.1187 5.0547 27 6 4.0776 -1.4703 2.4801 28 6 3.5704 -0.7225 1.2482 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 4.1595 -1.8327 -2.5181 34 1 4.4638 -1.6735 -4.2643 35 1 4.7186 -0.2804 -3.1858 36 1 2.0516 -2.3960 -4.8231 37 1 1.9335 -2.6996 -3.0710 38 1 -0.2993 -2.3424 -4.2654 39 1 -0.0053 -1.2772 -2.8720 40 1 0.9687 1.2281 -5.6945 41 1 3.0425 1.1554 -4.5492 42 1 3.0753 -0.2458 -5.6403 43 1 1.6762 -1.7487 1.2493 44 1 0.4399 0.0215 2.4870 45 1 1.9137 1.0205 2.5119 46 1 1.5577 -1.7338 3.7817 47 1 1.7370 -0.1832 4.6397 48 1 4.9873 -2.8009 4.1555 49 1 5.1629 -1.3861 2.5357 50 1 3.7937 -2.5204 2.4093 51 1 3.9331 -1.2162 0.3465 52 1 3.9352 0.3043 1.2733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284722958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:05 Heat of formation + Delta-G solvation = -99.359190 kcal Electronic energy + Delta-G solvation = -31439.698238 eV Core-core repulsion = 27437.457582 eV Total energy + Delta-G solvation = -4002.240656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.22293 -40.56411 -39.59780 -37.66021 -36.86693 -35.03068 -34.25825 -32.47703 -32.24024 -31.97734 -30.13629 -27.23104 -27.11801 -25.45262 -25.10340 -23.99328 -23.68563 -22.21927 -21.53684 -20.93803 -19.88694 -19.27935 -18.26891 -17.53611 -17.32360 -17.02618 -16.70479 -16.32449 -16.06155 -15.78406 -15.46219 -15.35318 -15.12044 -15.04127 -14.84672 -14.53367 -14.43866 -14.18691 -14.00322 -13.74055 -13.48100 -13.45650 -13.28169 -13.12442 -12.94835 -12.82719 -12.54937 -12.42689 -12.32396 -12.21501 -12.00850 -11.91466 -11.79401 -11.71670 -11.57217 -11.30374 -11.10318 -10.87714 -10.66635 -10.45010 -10.10977 -10.03836 -8.90284 -8.23961 -5.38114 1.57432 1.57790 1.64188 1.64379 1.83485 2.13833 2.33997 2.65289 3.21512 3.37181 3.45744 3.55230 3.61408 3.67218 3.71415 3.88886 3.93794 3.99988 4.30830 4.35191 4.36113 4.39195 4.45058 4.48717 4.58606 4.61655 4.67681 4.71029 4.73435 4.80159 4.82737 4.89590 4.91294 4.96439 4.98047 5.01573 5.10625 5.14642 5.16835 5.25927 5.26883 5.32052 5.33390 5.49832 5.61310 5.75736 5.85004 6.31059 6.42163 6.56640 7.09627 7.15389 7.26358 7.80589 8.24292 9.01215 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002783 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.078910 B =10059.362042 C =10696.107874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.058 0.942 4 N -0.709 5.709 5 C 0.518 3.482 6 O -0.578 6.578 7 C -0.093 4.093 8 C -0.137 4.137 9 C -0.105 4.105 10 C -0.141 4.141 11 C 0.512 3.488 12 O -0.617 6.617 13 N -0.705 5.705 14 C 0.128 3.872 15 C -0.071 4.071 16 C -0.116 4.116 17 C 0.143 3.857 18 N -0.620 5.620 19 C -0.358 4.358 20 H 0.044 0.956 21 C -0.073 4.073 22 N -0.939 5.939 23 Si 1.110 2.890 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.157 3.843 28 C -0.112 4.112 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.400 0.600 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.021 0.979 47 H 0.044 0.956 48 H 0.256 0.744 49 H 0.039 0.961 50 H 0.011 0.989 51 H 0.079 0.921 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.621 -1.848 -20.419 21.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.077 0.923 4 N -0.360 5.360 5 C 0.305 3.695 6 O -0.457 6.457 7 C -0.096 4.096 8 C -0.195 4.195 9 C -0.143 4.143 10 C -0.180 4.180 11 C 0.301 3.699 12 O -0.500 6.500 13 N -0.353 5.353 14 C 0.004 3.996 15 C -0.090 4.090 16 C -0.156 4.156 17 C 0.018 3.982 18 N -0.345 5.345 19 C -0.488 4.488 20 H 0.062 0.938 21 C -0.270 4.270 22 N -0.581 5.581 23 Si 0.935 3.065 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.209 1.209 27 C 0.031 3.969 28 C -0.151 4.151 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.249 0.751 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.235 0.765 41 H 0.096 0.904 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.029 0.971 51 H 0.097 0.903 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.735 -1.123 -19.971 20.556 hybrid contribution -1.613 0.389 -0.094 1.662 sum -6.348 -0.734 -20.065 21.059 Atomic orbital electron populations 1.22143 0.94485 1.02936 1.01813 1.20781 0.94191 0.96056 0.83668 0.92340 1.45974 1.66583 1.14570 1.08873 1.20955 0.76522 0.86803 0.85248 1.90711 1.51524 1.17920 1.85544 1.21254 0.99869 0.96879 0.91618 1.21825 0.90246 1.02371 1.05021 1.21869 0.90356 0.95559 1.06485 1.21751 1.00696 0.95770 0.99821 1.20679 0.83558 0.85344 0.80347 1.90721 1.26294 1.74383 1.58619 1.45368 1.07788 1.29049 1.53129 1.21498 0.81122 1.00377 0.96606 1.21182 0.94812 0.99967 0.93070 1.21944 1.00684 0.98608 0.94318 1.21028 0.83580 0.96977 0.96582 1.44363 1.01599 1.73255 1.15272 1.20191 1.03534 1.14578 1.10459 0.93802 1.27069 1.02343 0.96270 1.01279 1.70899 1.36356 1.07583 1.43296 0.82910 0.73892 0.74163 0.75523 1.20394 1.21510 1.20948 1.20732 0.96694 0.93591 0.85842 1.21829 0.95722 0.99743 0.97806 0.90720 0.90811 0.94182 0.75082 0.90505 0.87928 0.92452 0.87104 0.87314 0.86381 0.89145 0.76521 0.90358 0.87063 0.89787 0.89363 0.93663 0.96125 0.93747 0.93418 0.94241 0.97111 0.90298 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.13 71.98 0.66 -2.72 16 2 C 0.16 3.76 2.16 44.99 0.10 3.86 16 3 H 0.06 1.76 7.58 -2.39 -0.02 1.75 16 4 N -0.71 -13.19 4.11 -442.54 -1.82 -15.01 16 5 C 0.52 10.66 4.70 87.66 0.41 11.07 16 6 O -0.58 -17.28 15.24 -3.03 -0.05 -17.33 16 7 C -0.09 -1.10 0.65 -52.84 -0.03 -1.14 16 8 C -0.14 -1.10 8.45 71.98 0.61 -0.49 16 9 C -0.11 -0.83 4.73 30.73 0.15 -0.69 16 10 C -0.14 -2.13 5.50 29.70 0.16 -1.97 16 11 C 0.51 11.77 7.44 87.71 0.65 12.42 16 12 O -0.62 -20.16 17.78 -3.04 -0.05 -20.21 16 13 N -0.70 -12.85 5.11 -467.31 -2.39 -15.23 16 14 C 0.13 1.58 5.42 86.49 0.47 2.05 16 15 C -0.07 -1.92 1.79 -10.77 -0.02 -1.94 16 16 C -0.12 -3.59 5.05 30.67 0.15 -3.44 16 17 C 0.14 5.71 6.52 86.36 0.56 6.28 16 18 N -0.62 -30.30 2.85 -699.91 -2.00 -32.29 16 19 C -0.36 -19.99 9.48 84.04 0.80 -19.20 16 20 H 0.04 2.49 7.94 -2.91 -0.02 2.47 16 21 C -0.07 -4.11 4.68 84.86 0.40 -3.71 16 22 N -0.94 -55.99 12.43 21.65 0.27 -55.72 16 23 Si 1.11 50.68 29.99 68.60 2.06 52.74 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 27 C 0.16 6.93 4.67 86.22 0.40 7.33 16 28 C -0.11 -3.69 5.21 30.53 0.16 -3.53 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.55 6.40 -2.39 -0.02 1.53 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.41 5.48 7.51 -92.71 -0.70 4.78 16 33 H 0.08 0.58 7.98 -2.39 -0.02 0.56 16 34 H 0.10 0.28 8.14 -2.39 -0.02 0.27 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.42 8.13 -2.38 -0.02 0.40 16 37 H 0.11 0.43 7.56 -2.39 -0.02 0.41 16 38 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.09 1.59 7.36 -2.39 -0.02 1.57 16 40 H 0.40 7.22 8.80 -92.71 -0.82 6.40 16 41 H 0.08 1.16 7.72 -2.39 -0.02 1.14 16 42 H 0.11 0.62 8.12 -2.39 -0.02 0.60 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.09 2.20 6.36 -2.39 -0.02 2.18 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.04 1.82 7.93 -2.39 -0.02 1.80 16 48 H 0.26 15.39 6.71 -92.71 -0.62 14.77 16 49 H 0.04 2.03 6.33 -2.39 -0.02 2.01 16 50 H 0.01 0.48 7.87 -2.39 -0.02 0.46 16 51 H 0.08 2.10 7.40 -2.38 -0.02 2.09 16 52 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -80.20 395.39 1.20 -78.99 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.44 Total: 19.86 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.62 Total: 4.21 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -5.93 Total: -118.26 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.10 Total: -37.54 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.74 kcal Total: -80.20 1.20 -78.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284722958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.364 kcal (2) G-P(sol) polarization free energy of solvation -80.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds