Wall clock time and date at job start Tue Mar 31 2020 21:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.47014 * 125.65113 * 0.02562 * 4 2 1 6 6 C 1.54322 * 107.27676 * 181.02629 * 5 4 2 7 7 C 1.55163 * 102.93907 * 22.19393 * 6 5 4 8 8 C 1.47422 * 125.64458 * 179.72077 * 4 2 1 9 9 H 1.09003 * 110.36501 * 274.73856 * 8 4 2 10 10 C 1.50701 * 110.37345 * 37.06447 * 8 4 2 11 11 O 1.21278 * 119.99304 * 18.54743 * 10 8 4 12 12 N 1.34774 * 120.00148 * 198.54626 * 10 8 4 13 13 C 1.46921 * 120.63066 * 359.72029 * 12 10 8 14 14 C 1.52760 * 109.01081 * 233.58018 * 13 12 10 15 15 C 1.53038 * 109.38343 * 305.59316 * 14 13 12 16 16 C 1.53004 * 109.46151 * 181.25590 * 15 14 13 17 17 H 1.08999 * 109.46689 * 299.92978 * 16 15 14 18 18 C 1.52999 * 109.46965 * 179.97438 * 16 15 14 19 19 N 1.46500 * 109.46788 * 59.93020 * 16 15 14 20 20 C 1.36939 * 119.99647 * 204.99797 * 19 16 15 21 21 H 1.07995 * 120.00190 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99683 * 180.02562 * 20 19 16 23 23 N 1.31614 * 119.99999 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99854 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47341 * 90.00137 * 24 22 20 26 26 H 1.48502 * 109.46891 * 210.00339 * 24 22 20 27 27 H 1.48497 * 109.46906 * 329.99809 * 24 22 20 28 28 C 1.53044 * 109.53928 * 61.23540 * 15 14 13 29 29 C 1.46927 * 120.62696 * 179.97438 * 12 10 8 30 30 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 32 32 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 33 33 H 1.09004 * 109.88637 * 300.44775 * 5 4 2 34 34 H 1.09005 * 109.88390 * 61.45570 * 5 4 2 35 35 H 1.08995 * 110.72455 * 140.55753 * 6 5 4 36 36 H 1.09002 * 110.71810 * 263.65733 * 6 5 4 37 37 H 1.08994 * 111.00670 * 82.57229 * 7 6 5 38 38 H 1.08996 * 111.00377 * 206.38813 * 7 6 5 39 39 H 1.08996 * 109.58959 * 353.41695 * 13 12 10 40 40 H 1.09004 * 109.58311 * 113.84328 * 13 12 10 41 41 H 1.08990 * 109.56947 * 185.55060 * 14 13 12 42 42 H 1.09008 * 109.38466 * 65.51369 * 14 13 12 43 43 H 1.08996 * 109.46188 * 301.21555 * 15 14 13 44 44 H 1.09008 * 109.46999 * 179.97438 * 18 16 15 45 45 H 1.08996 * 109.47243 * 300.00066 * 18 16 15 46 46 H 1.09002 * 109.47167 * 60.00136 * 18 16 15 47 47 H 0.96994 * 120.00006 * 24.99944 * 19 16 15 48 48 H 0.97007 * 120.00000 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.49901 * 178.68352 * 28 15 14 50 50 H 1.08997 * 109.52363 * 58.60546 * 28 15 14 51 51 H 1.09000 * 109.58541 * 246.15404 * 29 12 10 52 52 H 1.08998 * 109.58943 * 6.58421 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 1.5748 -2.5065 0.0114 6 6 2.7282 -3.5314 0.0429 7 6 3.9083 -2.7086 0.6241 8 6 3.6480 -1.3122 0.0004 9 1 4.0295 -1.2728 -1.0199 10 6 4.2846 -0.2358 0.8415 11 8 3.6211 0.3673 1.6581 12 7 5.5910 0.0564 0.6862 13 6 6.4091 -0.6698 -0.2946 14 6 7.6419 -1.2361 0.4076 15 6 8.3800 -0.1058 1.1284 16 6 9.6322 -0.6655 1.8064 17 1 9.3436 -1.4287 2.5291 18 6 10.3706 0.4645 2.5265 19 7 10.5113 -1.2580 0.7952 20 6 11.3977 -2.2399 1.1493 21 1 11.4484 -2.5778 2.1738 22 6 12.2311 -2.8009 0.1914 23 7 12.1697 -2.3888 -1.0570 24 14 13.4398 -4.1409 0.6742 25 1 12.7910 -5.4687 0.5287 26 1 14.6323 -4.0732 -0.2082 27 1 13.8570 -3.9458 2.0860 28 6 7.4617 0.5131 2.1849 29 6 6.2255 1.1035 1.4985 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3632 -0.5139 -0.8900 32 1 -0.3633 -0.5139 0.8899 33 1 0.9484 -2.6262 0.8954 34 1 0.9761 -2.6464 -0.8887 35 1 2.4827 -4.3683 0.6965 36 1 2.9585 -3.8837 -0.9626 37 1 3.8588 -2.6695 1.7123 38 1 4.8656 -3.1109 0.2929 39 1 5.8273 -1.4858 -0.7231 40 1 6.7232 0.0121 -1.0849 41 1 8.3042 -1.6918 -0.3284 42 1 7.3315 -1.9884 1.1329 43 1 8.6689 0.6578 0.4062 44 1 11.2625 0.0656 3.0099 45 1 10.6590 1.2282 1.8043 46 1 9.7161 0.9046 3.2789 47 1 10.4655 -0.9548 -0.1249 48 1 12.7518 -2.7811 -1.7266 49 1 7.9959 1.3025 2.7138 50 1 7.1526 -0.2549 2.8938 51 1 6.5244 1.9326 0.8571 52 1 5.5226 1.4572 2.2527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317682583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:19 Heat of formation + Delta-G solvation = -57.562873 kcal Electronic energy + Delta-G solvation = -30993.667952 eV Core-core repulsion = 26993.239721 eV Total energy + Delta-G solvation = -4000.428232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94841 -39.34219 -37.72942 -37.25126 -35.32441 -32.97485 -32.26126 -31.29367 -30.71983 -30.09246 -29.01245 -28.12960 -25.41625 -24.32764 -23.50884 -22.72639 -21.89752 -21.27593 -20.06424 -19.48952 -18.44656 -17.86065 -17.09043 -17.01461 -15.91269 -15.76496 -15.17844 -15.00732 -14.80741 -14.64421 -14.09688 -13.93174 -13.85500 -13.79229 -13.57371 -13.31425 -13.06408 -12.76452 -12.73061 -12.65957 -12.52385 -12.32264 -12.17759 -11.99052 -11.84731 -11.62611 -11.54832 -11.20485 -11.12592 -10.95202 -10.86170 -10.70493 -10.24743 -10.20480 -10.14764 -9.89765 -9.79020 -9.65299 -9.56108 -8.90802 -8.78836 -8.42598 -6.94385 -5.76980 -3.04554 2.49687 2.61330 2.86070 3.17996 3.41874 3.47967 3.49089 4.05484 4.18503 4.44934 4.56711 4.58182 4.67650 4.80416 4.92275 4.98213 5.01160 5.10744 5.12208 5.16248 5.23682 5.30238 5.39131 5.43437 5.47212 5.53006 5.54892 5.57892 5.58888 5.74177 5.76920 5.86840 5.93865 5.99157 6.01399 6.08946 6.16639 6.27084 6.34638 6.48046 6.51625 6.62533 6.68872 6.82854 6.96927 7.15172 7.31390 7.53016 7.70506 8.08663 8.35704 8.42162 9.53363 10.12003 10.46997 11.45732 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002722 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.785397 B =10283.881524 C =11311.927387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.526 3.474 3 O -0.518 6.518 4 N -0.612 5.612 5 C 0.103 3.897 6 C -0.130 4.130 7 C -0.123 4.123 8 C 0.116 3.884 9 H 0.096 0.904 10 C 0.517 3.483 11 O -0.521 6.521 12 N -0.607 5.607 13 C 0.104 3.896 14 C -0.122 4.122 15 C -0.089 4.089 16 C 0.178 3.822 17 H 0.044 0.956 18 C -0.166 4.166 19 N -0.723 5.723 20 C -0.233 4.233 21 H 0.068 0.932 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.127 4.127 29 C 0.117 3.883 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.045 0.955 46 H 0.038 0.962 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.064 0.936 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.264 -0.399 0.798 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.315 3.685 3 O -0.392 6.392 4 N -0.349 5.349 5 C -0.020 4.020 6 C -0.168 4.168 7 C -0.161 4.161 8 C 0.009 3.991 9 H 0.114 0.886 10 C 0.303 3.697 11 O -0.396 6.396 12 N -0.342 5.342 13 C -0.019 4.019 14 C -0.160 4.160 15 C -0.109 4.109 16 C 0.069 3.931 17 H 0.062 0.938 18 C -0.227 4.227 19 N -0.364 5.364 20 C -0.364 4.364 21 H 0.086 0.914 22 C -0.210 4.210 23 N -0.583 5.583 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.209 1.209 28 C -0.165 4.165 29 C -0.006 4.006 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.264 0.475 1.319 23.306 hybrid contribution 0.889 -0.755 -0.171 1.179 sum -22.375 -0.280 1.148 22.406 Atomic orbital electron populations 1.21859 0.91485 1.05253 1.03821 1.20405 0.90170 0.82100 0.75850 1.90776 1.70306 1.30419 1.47700 1.48342 1.05211 1.06169 1.75185 1.22036 0.96420 0.81616 1.01903 1.22642 0.94075 0.97491 1.02605 1.22825 0.99923 0.91747 1.01602 1.21904 0.82245 0.95113 0.99818 0.88599 1.20253 0.81714 0.83746 0.83947 1.90682 1.61485 1.51260 1.36140 1.48036 1.08608 1.37922 1.39590 1.21827 0.92975 0.95962 0.91092 1.21812 0.95376 0.98036 1.00751 1.21368 0.95272 0.97189 0.97036 1.20211 0.88547 0.93031 0.91348 0.93781 1.22494 1.00543 0.99914 0.99703 1.42416 1.42669 1.44066 1.07246 1.19221 1.11891 1.11189 0.94138 0.91382 1.24698 1.00314 1.00415 0.95586 1.69651 1.42208 1.45539 1.00872 0.86242 0.80927 0.82019 0.77327 1.21833 1.21874 1.20889 1.22022 0.95321 1.00902 0.98298 1.21577 0.94747 0.89397 0.94851 0.89078 0.89735 0.89632 0.91223 0.91017 0.89382 0.89919 0.89856 0.88545 0.90402 0.91338 0.88915 0.91985 0.91410 0.93068 0.93598 0.94293 0.78348 0.93611 0.90498 0.91809 0.91810 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.51 36.01 0.34 -0.94 16 2 C 0.53 6.78 7.23 -10.98 -0.08 6.70 16 3 O -0.52 -9.30 14.55 -18.18 -0.26 -9.57 16 4 N -0.61 -6.63 3.13 -164.21 -0.51 -7.14 16 5 C 0.10 0.66 6.48 -3.07 -0.02 0.64 16 6 C -0.13 -0.74 6.95 -24.89 -0.17 -0.91 16 7 C -0.12 -1.05 6.29 -24.45 -0.15 -1.20 16 8 C 0.12 1.32 2.56 -67.45 -0.17 1.15 16 9 H 0.10 1.00 6.81 -51.93 -0.35 0.65 16 10 C 0.52 7.82 6.02 -10.99 -0.07 7.76 16 11 O -0.52 -9.81 13.41 -18.17 -0.24 -10.05 16 12 N -0.61 -8.49 2.98 -173.01 -0.52 -9.01 16 13 C 0.10 1.29 6.20 -3.94 -0.02 1.27 16 14 C -0.12 -1.78 5.21 -26.84 -0.14 -1.92 16 15 C -0.09 -1.38 1.79 -90.58 -0.16 -1.54 16 16 C 0.18 3.37 2.47 -67.93 -0.17 3.20 16 17 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 18 C -0.17 -2.96 9.14 37.16 0.34 -2.62 16 19 N -0.72 -17.08 4.41 -53.42 -0.24 -17.32 16 20 C -0.23 -6.23 9.93 -15.06 -0.15 -6.38 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 24 Si 0.90 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C -0.13 -1.73 5.05 -26.59 -0.13 -1.87 16 29 C 0.12 1.63 6.44 -3.69 -0.02 1.61 16 30 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.10 0.75 7.46 -51.93 -0.39 0.36 16 39 H 0.08 0.80 4.90 -51.93 -0.25 0.54 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.58 7.40 -51.93 -0.38 1.19 16 42 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 47 H 0.38 9.62 7.58 -40.82 -0.31 9.31 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 LS Contribution 399.33 15.07 6.02 6.02 Total: -1.00 -35.36 399.33 -9.95 -45.31 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -9.02 Total: 6.96 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.88 Total: 4.45 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.54 Total: -60.06 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.51 Total: -19.62 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.36 -9.95 -45.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317682583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.250 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds