Wall clock time and date at job start Tue Mar 31 2020 20:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.88939 * 2 1 4 4 C 1.55133 * 110.90543 * 124.09433 * 2 1 3 5 5 N 1.47428 * 104.72430 * 155.27455 * 4 2 1 6 6 C 1.34777 * 125.64593 * 155.81267 * 5 4 2 7 7 O 1.21282 * 120.00341 * 359.72279 * 6 5 4 8 8 C 1.50699 * 119.99618 * 179.71842 * 6 5 4 9 9 N 1.46496 * 109.47313 * 180.02562 * 8 6 5 10 10 C 1.34777 * 120.00258 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00166 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99762 * 179.97438 * 10 9 8 13 13 C 1.53002 * 109.46925 * 179.97438 * 12 10 9 14 14 C 1.54274 * 110.02793 * 292.16675 * 13 12 10 15 15 C 1.54893 * 104.19176 * 217.10522 * 14 13 12 16 16 C 1.54886 * 102.74818 * 37.94157 * 15 14 13 17 17 C 1.53872 * 110.03281 * 175.00009 * 13 12 10 18 18 C 1.47019 * 108.69912 * 335.55399 * 5 4 2 19 19 C 1.54325 * 107.27488 * 1.28588 * 18 5 4 20 20 H 1.08993 * 110.71928 * 140.55838 * 19 18 5 21 21 N 1.46501 * 110.71825 * 263.83245 * 19 18 5 22 22 C 1.36940 * 119.99711 * 273.54606 * 21 19 18 23 23 H 1.08001 * 120.00074 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99851 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00352 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00058 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47044 * 60.00079 * 26 24 22 28 28 H 1.48501 * 109.47166 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47253 * 300.00161 * 26 24 22 30 30 H 1.09004 * 109.46939 * 183.87932 * 1 2 3 31 31 H 1.08997 * 109.47169 * 303.88231 * 1 2 3 32 32 H 1.08999 * 109.46656 * 63.88360 * 1 2 3 33 33 H 1.08998 * 110.50063 * 36.43064 * 4 2 1 34 34 H 1.09005 * 110.34357 * 274.03949 * 4 2 1 35 35 H 1.09000 * 109.47247 * 60.00376 * 8 6 5 36 36 H 1.09004 * 109.47103 * 300.00254 * 8 6 5 37 37 H 0.96999 * 119.99694 * 359.97438 * 9 8 6 38 38 H 1.09000 * 109.47318 * 299.99141 * 12 10 9 39 39 H 1.09000 * 109.47161 * 59.99772 * 12 10 9 40 40 H 1.09004 * 110.01988 * 53.60598 * 13 12 10 41 41 H 1.08990 * 110.48784 * 335.78355 * 14 13 12 42 42 H 1.08997 * 110.48429 * 98.43178 * 14 13 12 43 43 H 1.09004 * 110.75729 * 279.62601 * 15 14 13 44 44 H 1.08998 * 110.75505 * 156.25867 * 15 14 13 45 45 H 1.09002 * 110.48178 * 203.37619 * 16 15 14 46 46 H 1.08997 * 110.48363 * 80.73887 * 16 15 14 47 47 H 1.08995 * 110.03163 * 238.56604 * 17 13 12 48 48 H 1.08994 * 110.03444 * 359.97438 * 17 13 12 49 49 H 1.09002 * 109.88331 * 120.70502 * 18 5 4 50 50 H 1.09000 * 109.87993 * 241.86380 * 18 5 4 51 51 H 0.97000 * 120.00382 * 93.54191 * 21 19 18 52 52 H 0.96992 * 120.00748 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0836 -0.8124 1.2001 5 7 3.4272 -1.2434 0.7730 6 6 4.4476 -1.5622 1.5936 7 8 4.3008 -1.5010 2.7960 8 6 5.7712 -1.9947 1.0172 9 7 6.7072 -2.2837 2.1064 10 6 7.9615 -2.6901 1.8271 11 8 8.3152 -2.8169 0.6740 12 6 8.9245 -2.9869 2.9478 13 6 10.2682 -3.4261 2.3626 14 6 10.1202 -4.7968 1.6701 15 6 11.4485 -5.5277 1.9870 16 6 11.7409 -5.0894 3.4435 17 6 11.2986 -3.6122 3.4901 18 6 3.4674 -1.2739 -0.6964 19 6 2.0862 -0.8075 -1.2025 20 1 2.1922 -0.1693 -2.0796 21 7 1.2268 -1.9569 -1.4968 22 6 1.2816 -2.5554 -2.7273 23 1 1.9580 -2.1798 -3.4808 24 6 0.4678 -3.6448 -3.0060 25 7 -0.3569 -4.1023 -2.0878 26 14 0.5420 -4.4609 -4.6847 27 1 1.9163 -4.9681 -4.9282 28 1 -0.4187 -5.5924 -4.7280 29 1 0.1870 -3.4705 -5.7327 30 1 -0.3633 -1.0254 0.0695 31 1 -0.3633 0.5729 0.8531 32 1 -0.3632 0.4524 -0.9228 33 1 1.4524 -1.6786 1.3983 34 1 2.1515 -0.1809 2.0860 35 1 6.1741 -1.1966 0.3937 36 1 5.6290 -2.8909 0.4133 37 1 6.4244 -2.1820 3.0287 38 1 9.0665 -2.0907 3.5518 39 1 8.5217 -3.7852 3.5711 40 1 10.6253 -2.6833 1.6492 41 1 9.2747 -5.3448 2.0857 42 1 10.0020 -4.6698 0.5941 43 1 12.2416 -5.1955 1.3170 44 1 11.3185 -6.6083 1.9275 45 1 12.8053 -5.1760 3.6615 46 1 11.1571 -5.6847 4.1455 47 1 12.1561 -2.9603 3.3235 48 1 10.8416 -3.3892 4.4541 49 1 4.2426 -0.5994 -1.0601 50 1 3.6651 -2.2890 -1.0407 51 1 0.6191 -2.2941 -0.8201 52 1 -0.9258 -4.8633 -2.2827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327924375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:25 Heat of formation + Delta-G solvation = -96.788317 kcal Electronic energy + Delta-G solvation = -29404.932840 eV Core-core repulsion = 25402.803666 eV Total energy + Delta-G solvation = -4002.129174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52015 -40.76367 -39.22070 -38.60512 -35.75820 -35.51051 -33.99991 -32.61378 -32.23426 -29.75146 -29.50685 -29.29070 -27.25779 -25.96134 -25.69352 -23.52446 -21.76832 -21.46408 -20.74690 -20.66625 -20.25424 -19.43270 -18.57826 -17.75470 -17.48615 -17.03931 -16.76413 -16.64732 -16.30573 -15.85885 -15.73361 -15.62292 -15.33163 -14.74248 -14.60413 -14.51335 -14.25257 -14.16222 -14.09107 -13.63363 -13.42774 -13.31075 -13.07597 -12.92915 -12.87824 -12.76320 -12.33638 -12.18499 -12.12030 -11.99683 -11.92111 -11.83133 -11.65852 -11.51527 -11.46629 -11.38425 -11.27752 -11.18067 -10.93255 -10.88561 -10.26421 -9.72771 -9.01375 -7.92674 -5.20547 1.37955 1.49757 1.50929 1.56461 1.61872 1.66940 2.33565 2.57328 3.26941 3.38877 3.61181 3.70667 3.73130 3.81671 3.87744 3.90861 4.00281 4.08872 4.20056 4.30349 4.35621 4.42217 4.43760 4.59788 4.60340 4.63912 4.64445 4.71133 4.74679 4.85187 4.87573 4.91461 4.96188 4.98010 5.00459 5.11747 5.12127 5.15569 5.21826 5.24479 5.28694 5.33224 5.39962 5.51639 5.54601 5.56384 5.60176 6.29030 6.40623 6.47213 6.90306 7.18527 7.36903 8.11476 8.33600 9.30209 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012292 B = 0.002333 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.293447 B =11997.207317 C =13738.265832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.113 0.887 4 C 0.115 3.885 5 N -0.602 5.602 6 C 0.522 3.478 7 O -0.575 6.575 8 C 0.111 3.889 9 N -0.716 5.716 10 C 0.510 3.490 11 O -0.575 6.575 12 C -0.127 4.127 13 C -0.076 4.076 14 C -0.118 4.118 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.117 4.117 18 C 0.076 3.924 19 C 0.161 3.839 20 H 0.083 0.917 21 N -0.722 5.722 22 C -0.235 4.235 23 H 0.082 0.918 24 C -0.073 4.073 25 N -0.968 5.968 26 Si 0.966 3.034 27 H -0.281 1.281 28 H -0.302 1.302 29 H -0.277 1.277 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.416 0.584 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.376 0.624 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.956 6.488 12.606 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.131 0.869 4 C -0.007 4.007 5 N -0.334 5.334 6 C 0.311 3.689 7 O -0.456 6.456 8 C -0.016 4.016 9 N -0.372 5.372 10 C 0.299 3.701 11 O -0.454 6.454 12 C -0.166 4.166 13 C -0.095 4.095 14 C -0.156 4.156 15 C -0.165 4.165 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.050 4.050 19 C 0.051 3.949 20 H 0.101 0.899 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.100 0.900 24 C -0.265 4.265 25 N -0.619 5.619 26 Si 0.796 3.204 27 H -0.208 1.208 28 H -0.229 1.229 29 H -0.203 1.203 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.110 0.890 50 H 0.074 0.926 51 H 0.209 0.791 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 20.205 6.378 12.262 24.481 hybrid contribution -0.928 -1.064 -0.644 1.552 sum 19.277 5.314 11.618 23.127 Atomic orbital electron populations 1.21479 0.93512 1.01345 1.02046 1.22629 0.96739 0.99356 0.93033 0.86910 1.22336 0.82076 0.97908 0.98375 1.48426 1.11965 1.64928 1.08065 1.20339 0.85573 0.76949 0.85997 1.90638 1.83701 1.55945 1.15331 1.20903 0.86814 1.02975 0.90915 1.45819 1.11793 1.69033 1.10555 1.21429 0.82080 0.75215 0.91425 1.90700 1.77711 1.53391 1.23624 1.21921 0.93587 1.05205 0.95888 1.21529 0.93562 0.97202 0.97243 1.22387 0.97839 0.95601 0.99790 1.22535 0.96746 0.99856 0.97379 1.22366 1.01558 0.95978 0.96106 1.22214 0.98050 0.96973 0.98198 1.23189 1.01745 1.01893 0.78160 1.21490 0.88208 0.88784 0.96467 0.89918 1.42601 1.46100 1.34013 1.13546 1.19594 1.17031 1.08502 0.91588 0.90029 1.25462 0.99739 1.00352 1.00967 1.69794 1.28805 1.28231 1.35037 0.85327 0.76859 0.77720 0.80534 1.20787 1.22896 1.20275 0.94411 0.90908 0.92427 0.93418 0.89839 0.87455 0.89298 0.74521 0.86209 0.86987 0.91862 0.92479 0.93546 0.91715 0.91532 0.90798 0.91183 0.91117 0.89991 0.88999 0.92633 0.79060 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 8.85 71.98 0.64 -2.99 16 2 C -0.10 -2.69 3.53 -9.32 -0.03 -2.72 16 3 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.12 3.47 6.35 86.93 0.55 4.02 16 5 N -0.60 -18.32 3.32 -811.34 -2.70 -21.02 16 6 C 0.52 15.74 7.92 87.66 0.69 16.44 16 7 O -0.57 -19.52 15.92 -3.04 -0.05 -19.57 16 8 C 0.11 2.91 5.35 85.63 0.46 3.37 16 9 N -0.72 -16.55 5.53 -466.79 -2.58 -19.13 16 10 C 0.51 11.86 7.61 87.66 0.67 12.53 16 11 O -0.58 -17.77 14.83 -3.03 -0.04 -17.82 16 12 C -0.13 -1.89 4.83 29.85 0.14 -1.74 16 13 C -0.08 -1.26 2.55 -10.07 -0.03 -1.28 16 14 C -0.12 -2.31 5.43 31.67 0.17 -2.14 16 15 C -0.13 -1.94 6.91 31.89 0.22 -1.72 16 16 C -0.12 -1.42 6.83 31.67 0.22 -1.21 16 17 C -0.12 -1.33 6.46 31.32 0.20 -1.13 16 18 C 0.08 2.30 6.23 86.73 0.54 2.84 16 19 C 0.16 5.39 3.36 46.18 0.16 5.54 16 20 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 21 N -0.72 -32.64 4.61 -317.33 -1.46 -34.10 16 22 C -0.24 -12.03 9.98 84.03 0.84 -11.19 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 26 Si 0.97 44.84 29.55 68.60 2.03 46.87 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 30 H 0.04 1.34 6.37 -2.38 -0.02 1.32 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.67 7.99 -2.39 -0.02 1.65 16 34 H 0.08 2.31 8.03 -2.38 -0.02 2.29 16 35 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.42 8.72 7.44 -92.71 -0.69 8.03 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.34 8.00 -2.39 -0.02 1.32 16 40 H 0.06 1.26 7.92 -2.39 -0.02 1.24 16 41 H 0.06 1.13 7.76 -2.39 -0.02 1.12 16 42 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 43 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.08 0.69 7.67 -2.39 -0.02 0.67 16 49 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 51 H 0.38 18.72 6.10 -92.71 -0.57 18.15 16 52 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -67.72 410.78 1.04 -66.69 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.35 Total: 40.10 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.91 Total: 15.08 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -6.46 Total: -131.35 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.09 Total: -37.39 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.72 1.04 -66.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327924375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.101 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds