Wall clock time and date at job start Tue Mar 31 2020 20:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47469 * 2 1 4 4 N 1.46512 * 109.46804 * 239.99997 * 2 1 3 5 5 C 1.34780 * 119.99387 * 85.00018 * 4 2 1 6 6 O 1.21279 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99289 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.46796 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.60166 * 304.67733 * 8 7 5 10 10 C 1.53350 * 109.60369 * 184.18688 * 8 7 5 11 11 C 1.53063 * 108.43508 * 172.72598 * 10 8 7 12 12 C 1.50178 * 109.88937 * 48.89003 * 11 10 8 13 13 O 1.21283 * 118.23934 * 162.43824 * 12 11 10 14 14 N 1.33354 * 123.51407 * 342.41136 * 12 11 10 15 15 C 1.45750 * 124.10280 * 2.24526 * 14 12 11 16 16 C 1.53005 * 109.47444 * 120.00773 * 2 1 3 17 17 C 1.53041 * 109.45153 * 299.99383 * 16 2 1 18 18 C 1.53201 * 109.33508 * 178.61463 * 17 16 2 19 19 N 1.46998 * 108.73728 * 54.61891 * 18 17 16 20 20 C 1.36935 * 120.60901 * 126.38876 * 19 18 17 21 21 H 1.07998 * 119.99952 * 207.67649 * 20 19 18 22 22 C 1.38815 * 119.99918 * 27.68672 * 20 19 18 23 23 N 1.31614 * 120.00332 * 17.35531 * 22 20 19 24 24 Si 1.86808 * 119.99812 * 197.35895 * 22 20 19 25 25 H 1.48506 * 109.46866 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47167 * 119.99620 * 24 22 20 27 27 H 1.48494 * 109.47081 * 240.00049 * 24 22 20 28 28 C 1.46917 * 118.75901 * 306.41085 * 19 18 17 29 29 C 1.53042 * 109.44926 * 179.97438 * 16 2 1 30 30 H 1.09000 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46605 * 299.99844 * 1 2 3 32 32 H 1.08995 * 109.47593 * 59.99229 * 1 2 3 33 33 H 0.96994 * 119.99993 * 265.00065 * 4 2 1 34 34 H 1.08993 * 109.47620 * 299.99822 * 7 5 4 35 35 H 1.09002 * 109.47444 * 60.00400 * 7 5 4 36 36 H 1.08991 * 109.66821 * 292.44621 * 10 8 7 37 37 H 1.08998 * 109.66906 * 52.98425 * 10 8 7 38 38 H 1.08999 * 109.40356 * 288.75789 * 11 10 8 39 39 H 1.08998 * 109.32326 * 168.97131 * 11 10 8 40 40 H 0.96996 * 117.94436 * 182.22846 * 14 12 11 41 41 H 1.08994 * 109.30211 * 220.58896 * 15 14 12 42 42 H 1.09007 * 109.13355 * 101.10827 * 15 14 12 43 43 H 1.09000 * 109.46082 * 59.96732 * 16 2 1 44 44 H 1.08997 * 109.50147 * 298.57816 * 17 16 2 45 45 H 1.09000 * 109.50014 * 58.65289 * 17 16 2 46 46 H 1.08996 * 109.58609 * 174.44365 * 18 17 16 47 47 H 1.09008 * 109.58351 * 294.86740 * 18 17 16 48 48 H 0.97007 * 120.00009 * 179.97438 * 23 22 20 49 49 H 1.09006 * 109.58747 * 293.82170 * 28 19 18 50 50 H 1.09000 * 109.58776 * 173.39572 * 28 19 18 51 51 H 1.08999 * 109.49529 * 301.32469 * 29 16 2 52 52 H 1.08999 * 109.49936 * 61.38808 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8580 1.1584 -2.4117 7 6 2.6497 -0.7285 -3.5876 8 6 2.7004 0.2545 -4.7590 9 1 1.7197 0.7096 -4.8971 10 6 3.1114 -0.4880 -6.0362 11 6 2.9775 0.4737 -7.2195 12 6 3.6502 1.7772 -6.8971 13 8 3.9237 2.5238 -7.8129 14 7 3.9624 2.1579 -5.6578 15 6 3.7351 1.3430 -4.4709 16 6 2.0401 -0.7214 1.2492 17 6 1.5298 0.0003 2.4985 18 6 2.0133 -0.7440 3.7473 19 7 3.4758 -0.8769 3.6811 20 6 4.2622 -0.4506 4.7179 21 1 5.2759 -0.1288 4.5299 22 6 3.7567 -0.4323 6.0106 23 7 2.6767 -1.1246 6.3047 24 14 4.6092 0.5752 7.3327 25 1 5.7932 1.2562 6.7497 26 1 3.6663 1.5908 7.8662 27 1 5.0463 -0.3210 8.4331 28 6 4.0777 -1.4752 2.4819 29 6 3.5705 -0.7216 1.2482 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8898 33 1 2.2489 -1.6318 -1.1527 34 1 3.6490 -1.1203 -3.3981 35 1 1.9775 -1.5508 -3.8327 36 1 4.1454 -0.8216 -5.9500 37 1 2.4590 -1.3480 -6.1867 38 1 1.9217 0.6519 -7.4237 39 1 3.4468 0.0318 -8.0984 40 1 4.3663 3.0317 -5.5388 41 1 3.3745 1.9779 -3.6617 42 1 4.6743 0.8772 -4.1721 43 1 1.6762 -1.7489 1.2492 44 1 1.9136 1.0204 2.5117 45 1 0.4401 0.0216 2.4869 46 1 1.7366 -0.1808 4.6384 47 1 1.5578 -1.7338 3.7820 48 1 2.3236 -1.1120 7.2082 49 1 3.7905 -2.5245 2.4135 50 1 5.1632 -1.3943 2.5386 51 1 3.9336 -1.2148 0.3466 52 1 3.9345 0.3055 1.2729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332984887.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:11 Heat of formation + Delta-G solvation = -78.565003 kcal Electronic energy + Delta-G solvation = -29929.475591 eV Core-core repulsion = 25928.136639 eV Total energy + Delta-G solvation = -4001.338952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.80432 -39.90552 -38.17517 -36.91579 -35.35419 -33.75745 -32.94556 -31.90494 -31.17861 -29.76020 -29.17375 -27.10004 -25.42849 -24.83687 -23.26755 -22.32103 -22.04660 -20.65999 -20.47558 -19.43551 -19.15804 -17.45150 -17.34735 -16.72043 -16.31783 -16.18003 -15.75028 -15.40045 -14.91833 -14.58323 -14.43054 -14.10477 -13.94372 -13.67597 -13.61084 -13.40642 -13.38529 -13.26168 -12.99415 -12.56149 -12.38042 -12.25767 -11.95267 -11.87143 -11.64194 -11.46837 -11.33669 -11.28364 -11.16752 -11.01735 -10.75058 -10.46833 -10.24754 -10.20133 -10.06977 -9.97767 -9.86665 -9.58091 -9.46899 -9.31002 -9.00106 -8.49853 -6.70288 -5.81898 -3.23591 2.38257 2.51256 3.02623 3.07037 3.34892 3.43224 3.45180 4.12113 4.21598 4.26796 4.37177 4.47322 4.63745 4.88078 4.89081 4.98780 5.04856 5.12917 5.17438 5.22060 5.29042 5.32761 5.35077 5.37266 5.41404 5.48615 5.61773 5.66119 5.70027 5.81136 5.84683 5.91558 6.02958 6.13259 6.21721 6.28191 6.40711 6.48040 6.49376 6.57110 6.67573 6.72881 6.80338 6.94414 7.07186 7.33185 7.44976 7.62595 7.77254 7.94359 8.13365 8.42248 9.18732 9.82461 10.38651 11.26567 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022385 B = 0.002065 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.538133 B =13555.295515 C =14071.392337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.085 0.915 4 N -0.719 5.719 5 C 0.510 3.490 6 O -0.543 6.543 7 C -0.136 4.136 8 C -0.087 4.087 9 H 0.090 0.910 10 C -0.121 4.121 11 C -0.134 4.134 12 C 0.517 3.483 13 O -0.566 6.566 14 N -0.716 5.716 15 C 0.106 3.894 16 C -0.084 4.084 17 C -0.134 4.134 18 C 0.171 3.829 19 N -0.593 5.593 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.145 3.855 29 C -0.125 4.125 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.399 0.601 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.088 0.912 47 H 0.017 0.983 48 H 0.253 0.747 49 H 0.015 0.985 50 H 0.052 0.948 51 H 0.047 0.953 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 -2.579 -22.009 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.103 0.897 4 N -0.369 5.369 5 C 0.296 3.704 6 O -0.421 6.421 7 C -0.176 4.176 8 C -0.107 4.107 9 H 0.108 0.892 10 C -0.158 4.158 11 C -0.174 4.174 12 C 0.304 3.696 13 O -0.445 6.445 14 N -0.367 5.367 15 C -0.018 4.018 16 C -0.103 4.103 17 C -0.174 4.174 18 C 0.045 3.955 19 N -0.316 5.316 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.218 1.218 28 C 0.019 3.981 29 C -0.164 4.164 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.235 0.765 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.063 0.937 49 H 0.033 0.967 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.809 -1.592 -22.359 22.591 hybrid contribution 0.586 0.206 1.020 1.195 sum -2.223 -1.385 -21.339 21.499 Atomic orbital electron populations 1.22193 0.95604 1.01875 1.02321 1.21169 0.93663 0.97544 0.83629 0.89662 1.46183 1.66788 1.14089 1.09878 1.20599 0.77705 0.87463 0.84655 1.90676 1.50334 1.16034 1.85009 1.21706 1.03854 0.99341 0.92739 1.21198 1.00615 0.95100 0.93738 0.89188 1.21764 1.02862 0.98156 0.93067 1.21621 1.02739 0.92868 1.00159 1.20212 0.78343 0.88737 0.82307 1.90759 1.54817 1.54601 1.44365 1.45483 1.63187 1.21464 1.06523 1.21693 0.98305 0.94178 0.87592 1.21333 0.96396 0.99249 0.93304 1.22268 0.98854 1.00083 0.96159 1.20790 0.83238 0.96811 0.94622 1.44081 1.02062 1.69846 1.15567 1.19219 0.96983 1.36142 0.85684 0.91731 1.25029 0.98442 0.99235 0.97037 1.70038 1.24593 1.40945 1.19185 0.86251 0.78956 0.79910 0.81834 1.20277 1.21536 1.21756 1.20889 0.96536 0.93876 0.86810 1.22035 0.94517 1.01303 0.98537 0.92723 0.91031 0.92800 0.76673 0.88364 0.88167 0.90837 0.90146 0.88153 0.88080 0.76516 0.88203 0.91962 0.91540 0.92536 0.92818 0.89416 0.96515 0.93702 0.96679 0.92983 0.93454 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.13 37.16 0.34 -1.54 16 2 C 0.14 1.77 2.16 -67.92 -0.15 1.62 16 3 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.72 -6.81 4.36 -53.80 -0.23 -7.05 16 5 C 0.51 4.86 7.55 -10.98 -0.08 4.78 16 6 O -0.54 -7.15 13.67 5.56 0.08 -7.08 16 7 C -0.14 -0.75 5.18 -27.88 -0.14 -0.89 16 8 C -0.09 -0.56 1.90 -90.48 -0.17 -0.73 16 9 H 0.09 0.71 7.95 -51.93 -0.41 0.30 16 10 C -0.12 -0.57 5.33 -26.52 -0.14 -0.72 16 11 C -0.13 -0.88 6.03 -28.10 -0.17 -1.05 16 12 C 0.52 5.33 7.71 -11.87 -0.09 5.24 16 13 O -0.57 -8.25 17.78 5.56 0.10 -8.15 16 14 N -0.72 -6.34 5.45 -61.39 -0.33 -6.67 16 15 C 0.11 0.82 6.10 -4.49 -0.03 0.79 16 16 C -0.08 -1.20 1.79 -90.57 -0.16 -1.36 16 17 C -0.13 -2.34 5.04 -26.61 -0.13 -2.47 16 18 C 0.17 3.87 5.31 -3.67 -0.02 3.85 16 19 N -0.59 -14.25 3.00 -172.26 -0.52 -14.76 16 20 C -0.25 -6.72 9.59 -15.06 -0.14 -6.87 16 21 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 22 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 23 N -0.90 -25.69 11.19 55.49 0.62 -25.06 16 24 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 29 C -0.12 -1.92 5.22 -26.61 -0.14 -2.06 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.85 6.40 -51.93 -0.33 0.52 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.40 2.92 8.39 -40.82 -0.34 2.57 16 34 H 0.10 0.40 8.12 -51.93 -0.42 -0.03 16 35 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.33 8.13 -51.93 -0.42 -0.10 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.40 3.41 8.80 -40.82 -0.36 3.05 16 41 H 0.10 0.97 6.17 -51.93 -0.32 0.65 16 42 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.84 6.36 -51.93 -0.33 0.51 16 46 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 47 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 51 H 0.05 0.59 7.40 -51.93 -0.38 0.21 16 52 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 398.94 15.07 6.01 6.01 Total: -1.00 -33.40 398.94 -9.72 -43.12 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -9.06 Total: 1.93 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.34 Total: 1.35 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.46 Total: -53.55 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.17 Total: -15.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.40 -9.72 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332984887.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.445 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds