Wall clock time and date at job start Tue Mar 31 2020 21:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 5 5 C 1.46899 * 111.00313 * 275.00230 * 4 2 1 6 6 C 1.50699 * 109.47386 * 179.97438 * 5 4 2 7 7 O 1.21291 * 119.99890 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00215 * 180.02562 * 6 5 4 9 9 C 1.37093 * 120.00291 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99982 * 359.97438 * 9 8 6 11 11 C 1.38947 * 120.00170 * 179.97438 * 9 8 6 12 12 N 1.31412 * 120.00132 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00047 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.46965 * 89.99860 * 13 11 9 15 15 H 1.48492 * 109.47104 * 210.00031 * 13 11 9 16 16 H 1.48497 * 109.47115 * 330.00463 * 13 11 9 17 17 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 18 18 C 1.53043 * 109.45734 * 180.02562 * 17 2 1 19 19 C 1.53201 * 109.30639 * 178.59803 * 18 17 2 20 20 N 1.46919 * 108.76708 * 54.65698 * 19 18 17 21 21 C 1.34779 * 120.63100 * 126.40150 * 20 19 18 22 22 O 1.21280 * 119.99856 * 179.97438 * 21 20 19 23 23 C 1.50692 * 120.00133 * 359.97438 * 21 20 19 24 24 C 1.52995 * 109.47467 * 180.02562 * 23 21 20 25 25 C 1.53002 * 117.49955 * 243.62319 * 24 23 21 26 26 C 1.52993 * 117.50365 * 174.99935 * 24 23 21 27 27 C 1.46927 * 118.73892 * 306.38616 * 20 19 18 28 28 C 1.53039 * 109.46170 * 59.96860 * 17 2 1 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.00906 * 111.00118 * 38.95572 * 4 2 1 33 33 H 1.09003 * 109.46741 * 300.00007 * 5 4 2 34 34 H 1.09003 * 109.47153 * 59.99606 * 5 4 2 35 35 H 0.97001 * 119.99616 * 359.97438 * 8 6 5 36 36 H 0.96996 * 120.00216 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.45834 * 299.99563 * 17 2 1 38 38 H 1.08998 * 109.49864 * 298.56065 * 18 17 2 39 39 H 1.08999 * 109.49867 * 58.66708 * 18 17 2 40 40 H 1.08998 * 109.59853 * 294.86718 * 19 18 17 41 41 H 1.09000 * 109.69631 * 174.50268 * 19 18 17 42 42 H 1.09000 * 109.47070 * 299.99738 * 23 21 20 43 43 H 1.08992 * 109.47480 * 59.99520 * 23 21 20 44 44 H 1.09005 * 115.55010 * 29.32828 * 24 23 21 45 45 H 1.08995 * 117.49592 * 359.97438 * 25 24 23 46 46 H 1.09003 * 117.49517 * 145.01682 * 25 24 23 47 47 H 1.09002 * 117.50075 * 214.98110 * 26 24 23 48 48 H 1.08999 * 117.49748 * 359.97438 * 26 24 23 49 49 H 1.09010 * 109.58200 * 293.81608 * 27 20 19 50 50 H 1.08996 * 109.70864 * 173.46625 * 27 20 19 51 51 H 1.08997 * 109.50134 * 301.34035 * 28 17 2 52 52 H 1.09010 * 109.49207 * 61.40440 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0825 0.2225 2.3469 6 6 2.5875 -0.5219 3.5559 7 8 2.8671 -1.6991 3.4703 8 7 2.7274 0.1200 4.7327 9 6 3.1863 -0.5573 5.8328 10 1 3.4353 -1.6055 5.7565 11 6 3.3311 0.1047 7.0458 12 7 3.7705 -0.5447 8.1004 13 14 2.9012 1.9178 7.1776 14 1 1.4716 2.0615 7.5533 15 1 3.7520 2.5541 8.2150 16 1 3.1379 2.5790 5.8692 17 6 2.0400 -0.7212 -1.2494 18 6 3.5704 -0.7215 -1.2487 19 6 4.0773 -1.4747 -2.4828 20 7 3.4748 -0.8768 -3.6819 21 6 4.2483 -0.4580 -4.7031 22 8 3.7387 0.0335 -5.6878 23 6 5.7462 -0.6004 -4.6213 24 6 6.3813 -0.0517 -5.9005 25 6 7.1450 -1.0362 -6.7885 26 6 7.9090 0.0018 -5.9641 27 6 2.0129 -0.7445 -3.7470 28 6 1.5291 0.0001 -2.4987 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.4496 -1.4980 1.4100 33 1 2.7589 1.0462 2.1181 34 1 1.0871 0.6162 2.5525 35 1 2.5035 1.0613 4.8013 36 1 3.8712 -0.0827 8.9473 37 1 1.6766 -1.7488 -1.2492 38 1 3.9345 0.3055 -1.2741 39 1 3.9337 -1.2147 -0.3471 40 1 3.7903 -2.5240 -2.4141 41 1 5.1628 -1.3957 -2.5412 42 1 6.1180 -0.0411 -3.7628 43 1 6.0056 -1.6530 -4.5091 44 1 5.8288 0.7477 -6.3943 45 1 7.1953 -2.0746 -6.4612 46 1 7.0948 -0.8846 -7.8668 47 1 8.3615 0.8362 -6.4999 48 1 8.4617 -0.3535 -5.0944 49 1 1.5576 -1.7343 -3.7814 50 1 1.7340 -0.1828 -4.6385 51 1 0.4394 0.0207 -2.4869 52 1 1.9122 1.0206 -2.5118 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481326421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:02 Heat of formation + Delta-G solvation = -75.894216 kcal Electronic energy + Delta-G solvation = -29258.073931 eV Core-core repulsion = 25256.850793 eV Total energy + Delta-G solvation = -4001.223138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33355 -40.34727 -39.32973 -37.96564 -37.03227 -35.94700 -34.02422 -33.68455 -32.23759 -31.17917 -29.85380 -28.05484 -26.46861 -25.39325 -24.01557 -23.22881 -22.74396 -21.71964 -21.35836 -20.99079 -20.23640 -19.81236 -18.23446 -17.69521 -17.21250 -16.94692 -16.63270 -16.39285 -15.98185 -15.85908 -15.58324 -15.24695 -15.04647 -14.95467 -14.76525 -14.57670 -14.50472 -14.28777 -14.05385 -13.83201 -13.49439 -13.32756 -13.27001 -13.05819 -12.93124 -12.70057 -12.40471 -12.39706 -12.32391 -12.22650 -12.07143 -11.97816 -11.55008 -11.49865 -11.36995 -11.30549 -11.27294 -10.96137 -10.66917 -10.39512 -10.23069 -9.62578 -9.20068 -8.40021 -6.00480 1.30849 1.35805 1.44847 1.62997 1.98541 2.02750 2.23637 2.75291 2.91249 3.16755 3.43358 3.52649 3.73129 3.78562 3.89713 4.03493 4.07698 4.15734 4.18616 4.20392 4.32778 4.38169 4.42483 4.46112 4.48997 4.54131 4.60325 4.61371 4.64682 4.74308 4.78314 4.80500 4.88403 4.92616 4.99268 5.04101 5.05031 5.12939 5.16566 5.26896 5.33866 5.36449 5.39768 5.52238 5.56203 5.68074 5.94372 6.14560 6.42845 6.47551 6.61636 6.90156 7.18066 7.42135 7.98772 8.77544 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015280 B = 0.002045 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.075794 B =13690.096402 C =14745.398551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 H 0.081 0.919 4 N -0.673 5.673 5 C 0.063 3.937 6 C 0.450 3.550 7 O -0.612 6.612 8 N -0.593 5.593 9 C -0.326 4.326 10 H 0.056 0.944 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.964 3.036 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.231 1.231 17 C -0.067 4.067 18 C -0.118 4.118 19 C 0.105 3.895 20 N -0.609 5.609 21 C 0.512 3.488 22 O -0.588 6.588 23 C -0.104 4.104 24 C -0.159 4.159 25 C -0.182 4.182 26 C -0.168 4.168 27 C 0.109 3.891 28 C -0.119 4.119 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.344 0.656 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.389 0.611 36 H 0.278 0.722 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.109 0.891 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.092 0.908 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 5.523 -26.853 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.019 4.019 3 H 0.099 0.901 4 N -0.305 5.305 5 C -0.069 4.069 6 C 0.238 3.762 7 O -0.496 6.496 8 N -0.235 5.235 9 C -0.455 4.455 10 H 0.074 0.926 11 C -0.215 4.215 12 N -0.576 5.576 13 Si 0.784 3.216 14 H -0.182 1.182 15 H -0.202 1.202 16 H -0.155 1.155 17 C -0.086 4.086 18 C -0.156 4.156 19 C -0.017 4.017 20 N -0.342 5.342 21 C 0.302 3.698 22 O -0.469 6.469 23 C -0.144 4.144 24 C -0.177 4.177 25 C -0.218 4.218 26 C -0.205 4.205 27 C -0.013 4.013 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.224 0.776 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.121 0.879 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.127 0.873 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.110 0.890 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.438 5.048 -27.358 27.823 hybrid contribution -1.074 0.688 1.054 1.654 sum -1.512 5.736 -26.304 26.964 Atomic orbital electron populations 1.22541 0.96305 1.02474 1.02787 1.21644 0.93172 0.97818 0.89219 0.90122 1.60160 1.58539 1.08997 1.02758 1.21624 1.01395 0.95492 0.88386 1.21012 0.82364 0.87965 0.84854 1.90542 1.55221 1.18588 1.85239 1.42060 1.60771 1.11793 1.08880 1.19000 1.42330 0.96022 0.88196 0.92576 1.26106 0.96529 1.04900 0.93963 1.69803 1.46457 1.39548 1.01744 0.85378 0.79335 0.76705 0.80193 1.18246 1.20150 1.15473 1.21020 0.95380 0.99634 0.92607 1.21783 0.95647 1.00706 0.97492 1.21964 0.99329 0.97371 0.82987 1.48281 1.07261 1.60721 1.17939 1.21105 0.90626 0.76395 0.81709 1.90644 1.76326 1.46711 1.33173 1.21281 0.89679 1.04385 0.99032 1.21996 0.94475 1.02975 0.98274 1.23122 1.04162 0.96372 0.98185 1.23083 0.92617 1.01727 1.03087 1.21609 0.79507 1.01156 0.99030 1.21946 1.01855 0.99035 0.92927 0.92998 0.92414 0.90197 0.83748 0.87259 0.91025 0.77591 0.91215 0.91066 0.92359 0.90315 0.90447 0.88037 0.86885 0.86901 0.88983 0.87859 0.88977 0.88283 0.87299 0.90677 0.90643 0.89008 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 8.81 71.98 0.63 -2.12 16 2 C 0.09 1.62 2.17 44.92 0.10 1.72 16 3 H 0.08 1.40 7.80 -2.39 -0.02 1.38 16 4 N -0.67 -17.30 5.08 -495.58 -2.52 -19.82 16 5 C 0.06 1.80 5.97 85.56 0.51 2.31 16 6 C 0.45 19.47 7.82 87.66 0.69 20.16 16 7 O -0.61 -32.61 15.78 -3.06 -0.05 -32.66 16 8 N -0.59 -27.26 5.09 -306.99 -1.56 -28.82 16 9 C -0.33 -18.81 10.16 84.04 0.85 -17.96 16 10 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 11 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 12 N -0.93 -55.88 13.96 21.66 0.30 -55.58 16 13 Si 0.96 38.24 27.74 68.60 1.90 40.14 16 14 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.23 -7.69 6.52 99.48 0.65 -7.05 16 17 C -0.07 -1.07 1.92 -10.76 -0.02 -1.09 16 18 C -0.12 -2.02 5.22 30.68 0.16 -1.86 16 19 C 0.11 1.48 6.34 86.37 0.55 2.03 16 20 N -0.61 -10.47 2.97 -818.92 -2.43 -12.90 16 21 C 0.51 10.49 7.70 87.65 0.67 11.16 16 22 O -0.59 -16.75 14.98 -3.03 -0.05 -16.80 16 23 C -0.10 -1.47 4.33 29.84 0.13 -1.34 16 24 C -0.16 -2.56 5.41 -10.80 -0.06 -2.62 16 25 C -0.18 -2.43 10.18 30.59 0.31 -2.12 16 26 C -0.17 -2.00 10.25 30.59 0.31 -1.69 16 27 C 0.11 1.79 6.43 86.36 0.55 2.35 16 28 C -0.12 -1.66 5.04 30.67 0.15 -1.51 16 29 H 0.05 0.83 7.45 -2.39 -0.02 0.82 16 30 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.08 0.94 6.40 -2.38 -0.02 0.93 16 32 H 0.34 9.74 8.17 -89.69 -0.73 9.01 16 33 H 0.11 2.65 8.06 -2.39 -0.02 2.63 16 34 H 0.07 1.68 7.44 -2.39 -0.02 1.67 16 35 H 0.39 14.78 5.76 -92.71 -0.53 14.24 16 36 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.72 7.56 -2.39 -0.02 1.71 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.07 5.93 -2.39 -0.01 1.06 16 42 H 0.11 1.25 7.70 -2.39 -0.02 1.23 16 43 H 0.11 1.16 7.67 -2.39 -0.02 1.14 16 44 H 0.09 1.95 7.31 -2.38 -0.02 1.94 16 45 H 0.10 1.16 8.03 -2.39 -0.02 1.14 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.08 1.49 7.01 -2.39 -0.02 1.47 16 51 H 0.09 1.02 6.36 -2.39 -0.02 1.01 16 52 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -77.95 407.19 1.21 -76.74 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.40 Total: 42.73 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 6.02 Total: 6.97 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -6.21 Total: -117.12 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.09 Total: -49.46 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -77.95 1.21 -76.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481326421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.847 kcal (2) G-P(sol) polarization free energy of solvation -77.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds