Wall clock time and date at job start Tue Mar 31 2020 21:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00318 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47356 * 59.99952 * 9 7 5 11 11 H 1.48497 * 109.47510 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47042 * 300.00443 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 C 1.53041 * 109.46391 * 180.02562 * 13 2 1 15 15 C 1.53190 * 109.31163 * 178.60195 * 14 13 2 16 16 N 1.46929 * 108.76794 * 54.65901 * 15 14 13 17 17 C 1.34771 * 120.63270 * 126.40220 * 16 15 14 18 18 O 1.21285 * 120.00233 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46781 * 180.02562 * 19 17 16 21 21 N 1.46506 * 109.46844 * 180.02562 * 20 19 17 22 22 C 1.46766 * 124.34428 * 269.72149 * 21 20 19 23 23 C 1.54665 * 105.37789 * 162.85387 * 22 21 20 24 24 C 1.54628 * 101.68462 * 25.76629 * 23 22 21 25 25 C 1.34419 * 124.35093 * 90.02202 * 21 20 19 26 26 O 1.21276 * 124.94645 * 0.42419 * 25 21 20 27 27 C 1.46929 * 118.73418 * 306.38435 * 16 15 14 28 28 C 1.53047 * 109.45869 * 59.97417 * 13 2 1 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96990 * 120.00689 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.46241 * 300.00609 * 13 2 1 35 35 H 1.08991 * 109.49676 * 298.56802 * 14 13 2 36 36 H 1.08996 * 109.49337 * 58.66731 * 14 13 2 37 37 H 1.09004 * 109.60289 * 294.86996 * 15 14 13 38 38 H 1.08997 * 109.70325 * 174.50754 * 15 14 13 39 39 H 1.09001 * 109.47088 * 299.99630 * 19 17 16 40 40 H 1.08999 * 109.47463 * 60.00012 * 19 17 16 41 41 H 1.09001 * 109.46733 * 299.99512 * 20 19 17 42 42 H 1.08992 * 109.47754 * 59.99583 * 20 19 17 43 43 H 1.09002 * 110.24558 * 281.97984 * 22 21 20 44 44 H 1.08996 * 110.24693 * 43.98729 * 22 21 20 45 45 H 1.09001 * 111.19376 * 267.58715 * 23 22 21 46 46 H 1.09000 * 110.85001 * 143.79273 * 23 22 21 47 47 H 1.08998 * 110.48302 * 216.30546 * 24 23 22 48 48 H 1.09003 * 110.59721 * 93.72534 * 24 23 22 49 49 H 1.09000 * 109.58288 * 293.81288 * 27 16 15 50 50 H 1.09002 * 109.57995 * 173.39481 * 27 16 15 51 51 H 1.09005 * 109.49662 * 301.33910 * 28 13 2 52 52 H 1.08993 * 109.49652 * 61.43397 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.9245 -1.9390 3.4502 9 14 2.7905 0.2700 5.1182 10 1 1.4685 0.8079 5.5285 11 1 3.2994 -0.6483 6.1683 12 1 3.7465 1.3918 4.9366 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2486 15 6 4.0773 -1.4750 -2.4825 16 7 3.4747 -0.8771 -3.6819 17 6 4.2482 -0.4584 -4.7030 18 8 3.7387 0.0330 -5.6878 19 6 5.7463 -0.6009 -4.6211 20 6 6.3814 -0.0523 -5.9005 21 7 7.8376 -0.1913 -5.8212 22 6 8.7383 0.8297 -5.2730 23 6 10.0691 0.0939 -4.9908 24 6 10.0013 -1.0744 -6.0015 25 6 8.5211 -1.2678 -6.2464 26 8 8.0235 -2.2510 -6.7529 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 -0.0001 -2.4987 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 3.2478 -2.3963 4.2421 34 1 1.6766 -1.7489 -1.2490 35 1 3.9345 0.3053 -1.2741 36 1 3.9337 -1.2148 -0.3470 37 1 3.7903 -2.5243 -2.4139 38 1 5.1628 -1.3961 -2.5410 39 1 6.1181 -0.0415 -3.7627 40 1 6.0056 -1.6536 -4.5089 41 1 6.0096 -0.6113 -6.7592 42 1 6.1221 1.0004 -6.0124 43 1 8.8917 1.6270 -6.0002 44 1 8.3296 1.2356 -4.3477 45 1 10.1045 -0.2777 -3.9667 46 1 10.9216 0.7405 -5.1986 47 1 10.4380 -1.9761 -5.5721 48 1 10.5100 -0.8096 -6.9285 49 1 1.5576 -1.7346 -3.7813 50 1 1.7363 -0.1819 -4.6384 51 1 0.4394 0.0206 -2.4868 52 1 1.9127 1.0201 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493847830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:37 Heat of formation + Delta-G solvation = -68.761266 kcal Electronic energy + Delta-G solvation = -29844.750216 eV Core-core repulsion = 25843.836386 eV Total energy + Delta-G solvation = -4000.913830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77948 -40.12878 -38.00806 -36.69684 -35.44032 -34.14880 -32.94873 -31.39019 -30.77673 -29.98104 -28.25672 -27.91480 -25.61237 -24.66043 -23.49701 -22.68792 -22.26420 -21.07805 -19.78032 -19.56353 -18.94020 -17.66002 -17.08561 -16.96572 -16.34059 -16.09668 -15.78654 -15.35163 -14.93156 -14.25608 -14.20919 -14.07474 -13.92168 -13.88030 -13.74915 -13.59978 -13.34011 -13.16078 -12.92863 -12.61180 -12.56406 -12.41475 -12.16685 -12.05265 -11.90381 -11.61869 -11.45884 -11.36741 -11.17422 -11.00863 -10.87196 -10.73704 -10.30729 -10.29552 -10.20133 -10.08508 -9.89189 -9.74279 -9.59309 -9.07395 -8.92389 -8.59834 -6.96975 -5.78793 -3.06695 2.27574 2.55748 2.57409 3.07624 3.41175 3.46379 3.46775 3.98078 4.06898 4.40101 4.45617 4.56221 4.61884 4.65839 4.74932 4.89891 5.04455 5.06821 5.08537 5.11055 5.20947 5.24387 5.28940 5.36562 5.38260 5.47803 5.51923 5.54770 5.55658 5.66575 5.69054 5.78165 5.91498 5.93355 6.01201 6.10393 6.18895 6.20436 6.30126 6.41697 6.46352 6.54088 6.64432 6.76986 6.80045 6.92917 7.11573 7.37284 7.67892 7.86966 8.09922 8.40234 9.51344 10.09593 10.44498 11.43841 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.002471 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.064072 B =11330.458587 C =12944.455402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.122 4.122 15 C 0.104 3.896 16 N -0.606 5.606 17 C 0.520 3.480 18 O -0.551 6.551 19 C -0.158 4.158 20 C 0.143 3.857 21 N -0.621 5.621 22 C 0.099 3.901 23 C -0.132 4.132 24 C -0.156 4.156 25 C 0.514 3.486 26 O -0.531 6.531 27 C 0.112 3.888 28 C -0.127 4.127 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.078 0.922 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.510 4.595 -18.467 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.160 4.160 15 C -0.018 4.018 16 N -0.339 5.339 17 C 0.308 3.692 18 O -0.430 6.430 19 C -0.199 4.199 20 C 0.021 3.979 21 N -0.355 5.355 22 C -0.024 4.024 23 C -0.170 4.170 24 C -0.196 4.196 25 C 0.302 3.698 26 O -0.407 6.407 27 C -0.010 4.010 28 C -0.166 4.166 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.918 4.457 -19.105 22.451 hybrid contribution 0.091 0.171 1.286 1.301 sum 11.009 4.628 -17.818 21.450 Atomic orbital electron populations 1.22497 0.99534 1.00771 0.99854 1.20211 0.91600 0.95282 0.86077 0.93774 1.42408 1.78103 1.10612 1.05283 1.19173 1.36296 0.93750 0.87419 0.91427 1.24701 1.02377 0.95942 0.97928 1.69632 1.51083 1.08616 1.28947 0.86313 0.77753 0.78606 0.83779 1.21378 1.21755 1.21364 1.21379 0.94914 0.99960 0.94668 1.21884 0.96137 1.00865 0.97123 1.21922 0.97966 0.97522 0.84432 1.48183 1.07303 1.60696 1.17724 1.20385 0.88922 0.77437 0.82427 1.90680 1.75536 1.45278 1.31515 1.22052 0.92587 1.04386 1.00840 1.21083 0.76848 1.02662 0.97350 1.48363 1.06733 1.18462 1.61955 1.22179 0.89738 0.91015 0.99497 1.22641 0.97317 0.96959 1.00110 1.22342 0.94395 1.01154 1.01724 1.20988 0.89713 0.82082 0.77020 1.90746 1.75385 1.30704 1.43852 1.21643 0.79042 1.00806 0.99552 1.22012 1.01181 0.99573 0.93822 0.94288 0.93037 0.93589 0.78348 0.93522 0.91383 0.91988 0.88904 0.91152 0.90136 0.88490 0.88504 0.89143 0.89399 0.90823 0.90041 0.89680 0.89084 0.87975 0.87847 0.91627 0.89314 0.90381 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.14 37.16 0.34 -2.55 16 2 C 0.18 3.31 2.47 -67.93 -0.17 3.14 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -16.97 4.41 -53.43 -0.24 -17.21 16 5 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 6 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 9 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 C -0.09 -1.34 1.79 -90.57 -0.16 -1.50 16 14 C -0.12 -1.76 5.22 -26.61 -0.14 -1.89 16 15 C 0.10 1.23 6.34 -3.71 -0.02 1.20 16 16 N -0.61 -7.59 2.97 -172.77 -0.51 -8.10 16 17 C 0.52 6.76 7.70 -10.99 -0.08 6.68 16 18 O -0.55 -8.74 15.40 5.55 0.09 -8.65 16 19 C -0.16 -1.60 4.37 -27.88 -0.12 -1.72 16 20 C 0.14 1.44 5.22 -4.04 -0.02 1.42 16 21 N -0.62 -5.43 2.93 -172.29 -0.51 -5.93 16 22 C 0.10 0.52 7.36 -3.02 -0.02 0.49 16 23 C -0.13 -0.52 7.19 -25.00 -0.18 -0.70 16 24 C -0.16 -0.94 6.86 -26.74 -0.18 -1.12 16 25 C 0.51 5.38 8.02 -10.86 -0.09 5.29 16 26 O -0.53 -7.97 17.59 5.56 0.10 -7.87 16 27 C 0.11 1.38 6.43 -3.71 -0.02 1.36 16 28 C -0.13 -1.63 5.04 -26.61 -0.13 -1.76 16 29 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.38 9.56 7.58 -40.82 -0.31 9.25 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.58 7.41 -51.93 -0.38 1.19 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 39 H 0.10 0.83 7.70 -51.93 -0.40 0.43 16 40 H 0.10 1.01 7.94 -51.93 -0.41 0.60 16 41 H 0.09 1.11 7.88 -51.93 -0.41 0.70 16 42 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 51 H 0.08 0.93 6.36 -51.93 -0.33 0.60 16 52 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 408.17 15.07 6.15 6.15 Total: -1.00 -33.51 408.17 -9.61 -43.12 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -9.13 Total: 6.74 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.26 Total: 1.44 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.53 Total: -57.79 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.18 Total: -16.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.51 -9.61 -43.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493847830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.641 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds