Wall clock time and date at job start Tue Mar 31 2020 21:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00318 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47356 * 59.99952 * 9 7 5 11 11 H 1.48497 * 109.47510 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47042 * 300.00443 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 C 1.53041 * 109.46391 * 180.02562 * 13 2 1 15 15 C 1.53190 * 109.31163 * 178.60195 * 14 13 2 16 16 N 1.46929 * 108.76794 * 54.65901 * 15 14 13 17 17 C 1.34771 * 120.63270 * 126.40220 * 16 15 14 18 18 O 1.21285 * 120.00233 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46781 * 180.02562 * 19 17 16 21 21 N 1.46506 * 109.46844 * 180.02562 * 20 19 17 22 22 C 1.46766 * 124.34428 * 269.72149 * 21 20 19 23 23 C 1.54665 * 105.37789 * 162.85387 * 22 21 20 24 24 C 1.54628 * 101.68462 * 25.76629 * 23 22 21 25 25 C 1.34419 * 124.35093 * 90.02202 * 21 20 19 26 26 O 1.21276 * 124.94645 * 0.42419 * 25 21 20 27 27 C 1.46929 * 118.73418 * 306.38435 * 16 15 14 28 28 C 1.53047 * 109.45869 * 59.97417 * 13 2 1 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 0.96990 * 120.00689 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.46241 * 300.00609 * 13 2 1 35 35 H 1.08991 * 109.49676 * 298.56802 * 14 13 2 36 36 H 1.08996 * 109.49337 * 58.66731 * 14 13 2 37 37 H 1.09004 * 109.60289 * 294.86996 * 15 14 13 38 38 H 1.08997 * 109.70325 * 174.50754 * 15 14 13 39 39 H 1.09001 * 109.47088 * 299.99630 * 19 17 16 40 40 H 1.08999 * 109.47463 * 60.00012 * 19 17 16 41 41 H 1.09001 * 109.46733 * 299.99512 * 20 19 17 42 42 H 1.08992 * 109.47754 * 59.99583 * 20 19 17 43 43 H 1.09002 * 110.24558 * 281.97984 * 22 21 20 44 44 H 1.08996 * 110.24693 * 43.98729 * 22 21 20 45 45 H 1.09001 * 111.19376 * 267.58715 * 23 22 21 46 46 H 1.09000 * 110.85001 * 143.79273 * 23 22 21 47 47 H 1.08998 * 110.48302 * 216.30546 * 24 23 22 48 48 H 1.09003 * 110.59721 * 93.72534 * 24 23 22 49 49 H 1.09000 * 109.58288 * 293.81288 * 27 16 15 50 50 H 1.09002 * 109.57995 * 173.39481 * 27 16 15 51 51 H 1.09005 * 109.49662 * 301.33910 * 28 13 2 52 52 H 1.08993 * 109.49652 * 61.43397 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.9245 -1.9390 3.4502 9 14 2.7905 0.2700 5.1182 10 1 1.4685 0.8079 5.5285 11 1 3.2994 -0.6483 6.1683 12 1 3.7465 1.3918 4.9366 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2486 15 6 4.0773 -1.4750 -2.4825 16 7 3.4747 -0.8771 -3.6819 17 6 4.2482 -0.4584 -4.7030 18 8 3.7387 0.0330 -5.6878 19 6 5.7463 -0.6009 -4.6211 20 6 6.3814 -0.0523 -5.9005 21 7 7.8376 -0.1913 -5.8212 22 6 8.7383 0.8297 -5.2730 23 6 10.0691 0.0939 -4.9908 24 6 10.0013 -1.0744 -6.0015 25 6 8.5211 -1.2678 -6.2464 26 8 8.0235 -2.2510 -6.7529 27 6 2.0129 -0.7448 -3.7469 28 6 1.5292 -0.0001 -2.4987 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 3.2478 -2.3963 4.2421 34 1 1.6766 -1.7489 -1.2490 35 1 3.9345 0.3053 -1.2741 36 1 3.9337 -1.2148 -0.3470 37 1 3.7903 -2.5243 -2.4139 38 1 5.1628 -1.3961 -2.5410 39 1 6.1181 -0.0415 -3.7627 40 1 6.0056 -1.6536 -4.5089 41 1 6.0096 -0.6113 -6.7592 42 1 6.1221 1.0004 -6.0124 43 1 8.8917 1.6270 -6.0002 44 1 8.3296 1.2356 -4.3477 45 1 10.1045 -0.2777 -3.9667 46 1 10.9216 0.7405 -5.1986 47 1 10.4380 -1.9761 -5.5721 48 1 10.5100 -0.8096 -6.9285 49 1 1.5576 -1.7346 -3.7813 50 1 1.7363 -0.1819 -4.6384 51 1 0.4394 0.0206 -2.4868 52 1 1.9127 1.0201 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493847830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:36 Heat of formation + Delta-G solvation = -89.498125 kcal Electronic energy + Delta-G solvation = -29845.649434 eV Core-core repulsion = 25843.836386 eV Total energy + Delta-G solvation = -4001.813048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.59361 -41.07506 -39.24638 -37.49810 -36.88670 -34.90962 -34.57456 -32.64039 -32.09279 -30.92215 -29.81751 -28.43577 -26.78289 -25.97470 -24.95141 -23.77853 -22.72523 -22.32882 -21.11347 -20.38069 -20.01412 -19.11711 -18.42755 -17.62028 -17.18139 -17.02707 -16.73322 -16.72120 -16.13026 -15.67093 -15.48880 -15.14315 -15.13771 -14.80513 -14.70786 -14.51983 -14.29413 -14.19414 -14.04705 -13.80979 -13.52002 -13.50384 -13.28356 -13.05639 -12.97122 -12.85056 -12.71884 -12.37214 -12.30102 -12.20946 -12.16309 -12.10842 -11.83548 -11.80302 -11.50692 -11.35672 -11.18788 -10.96336 -10.87154 -10.77785 -9.78331 -9.67754 -8.93677 -7.89496 -5.15736 1.48881 1.50189 1.50325 1.53216 1.56337 1.80996 2.18765 2.59165 3.43841 3.44059 3.51139 3.66303 3.76568 3.77739 3.85587 3.92780 3.95846 4.09349 4.16072 4.24257 4.25781 4.33971 4.40170 4.49128 4.55367 4.60335 4.62684 4.68019 4.74504 4.79160 4.81620 4.85971 4.89533 4.92181 4.93961 5.05983 5.08572 5.12920 5.14768 5.25481 5.25933 5.35694 5.48651 5.52438 5.53697 5.62495 5.69081 6.12857 6.33121 6.35023 7.05780 7.12703 7.39807 8.17762 8.40994 9.33545 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.002471 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.064072 B =11330.458587 C =12944.455402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.174 3.826 3 H 0.036 0.964 4 N -0.731 5.731 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.964 3.036 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.279 1.279 13 C -0.081 4.081 14 C -0.115 4.115 15 C 0.112 3.888 16 N -0.606 5.606 17 C 0.518 3.482 18 O -0.582 6.582 19 C -0.147 4.147 20 C 0.145 3.855 21 N -0.619 5.619 22 C 0.091 3.909 23 C -0.121 4.121 24 C -0.150 4.150 25 C 0.499 3.501 26 O -0.589 6.589 27 C 0.112 3.888 28 C -0.115 4.115 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.373 0.627 33 H 0.249 0.751 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.118 0.882 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.091 0.909 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.588 6.184 -18.755 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.054 0.946 4 N -0.371 5.371 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.205 1.205 13 C -0.100 4.100 14 C -0.153 4.153 15 C -0.010 4.010 16 N -0.339 5.339 17 C 0.307 3.693 18 O -0.463 6.463 19 C -0.188 4.188 20 C 0.022 3.978 21 N -0.352 5.352 22 C -0.030 4.030 23 C -0.158 4.158 24 C -0.189 4.189 25 C 0.289 3.711 26 O -0.470 6.470 27 C -0.010 4.010 28 C -0.154 4.154 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.113 0.887 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.137 0.863 47 H 0.124 0.876 48 H 0.137 0.863 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.992 6.114 -19.395 23.609 hybrid contribution -0.295 -0.257 1.310 1.368 sum 11.697 5.856 -18.085 22.320 Atomic orbital electron populations 1.22373 0.98209 1.00744 1.00507 1.20426 0.92392 0.94778 0.85864 0.94574 1.42560 1.78293 1.10235 1.06028 1.19499 1.34451 0.93900 0.88506 0.91270 1.25404 1.03400 0.96792 1.00961 1.69778 1.52855 1.09981 1.29256 0.85354 0.77742 0.77438 0.80094 1.20986 1.22418 1.20489 1.21259 0.95300 0.99563 0.93909 1.21744 0.95726 1.00632 0.97198 1.21879 0.99112 0.97191 0.82860 1.48250 1.07473 1.60387 1.17745 1.20819 0.89963 0.76642 0.81875 1.90667 1.76279 1.46718 1.32661 1.21988 0.90592 1.04552 1.01631 1.20926 0.78007 1.02567 0.96258 1.48514 1.06445 1.18956 1.61237 1.22495 0.89664 0.90555 1.00305 1.22681 0.97442 0.96113 0.99591 1.22382 0.90931 1.02424 1.03211 1.21854 0.91747 0.81463 0.76043 1.90704 1.76808 1.32969 1.46546 1.21648 0.79125 1.01255 0.98977 1.21906 1.01902 0.98990 0.92581 0.90859 0.95132 0.93928 0.79479 0.94216 0.91622 0.92360 0.91676 0.90608 0.88060 0.86270 0.88745 0.92114 0.88521 0.89281 0.88863 0.89290 0.86346 0.87564 0.86303 0.90615 0.89709 0.89038 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 9.14 71.98 0.66 -4.64 16 2 C 0.17 6.32 2.47 44.99 0.11 6.43 16 3 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 4 N -0.73 -34.50 4.41 -322.94 -1.42 -35.92 16 5 C -0.23 -12.34 9.93 84.04 0.83 -11.51 16 6 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 7 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 8 N -0.97 -57.30 13.06 21.65 0.28 -57.02 16 9 Si 0.96 45.12 29.55 68.60 2.03 47.15 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C -0.08 -2.33 1.79 -10.76 -0.02 -2.35 16 14 C -0.11 -3.21 5.22 30.67 0.16 -3.05 16 15 C 0.11 2.47 6.34 86.36 0.55 3.01 16 16 N -0.61 -14.29 2.97 -818.90 -2.43 -16.73 16 17 C 0.52 12.94 7.70 87.66 0.67 13.62 16 18 O -0.58 -18.23 15.40 -3.05 -0.05 -18.28 16 19 C -0.15 -2.80 4.37 29.85 0.13 -2.67 16 20 C 0.15 2.87 5.22 86.38 0.45 3.32 16 21 N -0.62 -10.11 2.93 -817.61 -2.40 -12.51 16 22 C 0.09 0.70 7.36 86.90 0.64 1.34 16 23 C -0.12 -0.56 7.19 31.72 0.23 -0.33 16 24 C -0.15 -1.51 6.86 30.59 0.21 -1.30 16 25 C 0.50 10.27 8.02 87.90 0.70 10.98 16 26 O -0.59 -18.42 17.59 -3.02 -0.05 -18.48 16 27 C 0.11 2.59 6.43 86.36 0.56 3.14 16 28 C -0.12 -2.71 5.04 30.67 0.15 -2.55 16 29 H 0.07 1.93 6.40 -2.39 -0.02 1.91 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.37 18.94 7.58 -92.71 -0.70 18.24 16 33 H 0.25 14.46 8.31 -92.72 -0.77 13.69 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 2.22 7.41 -2.39 -0.02 2.20 16 37 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.10 1.83 5.93 -2.39 -0.01 1.81 16 39 H 0.12 1.75 7.70 -2.39 -0.02 1.73 16 40 H 0.09 1.90 7.94 -2.39 -0.02 1.88 16 41 H 0.06 1.56 7.88 -2.39 -0.02 1.55 16 42 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 43 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.08 2.09 7.01 -2.39 -0.02 2.07 16 51 H 0.09 1.92 6.36 -2.38 -0.02 1.91 16 52 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.62 408.17 2.66 -71.95 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.20 Total: 30.01 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.51 Total: 9.82 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.97 Total: -122.18 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -0.10 Total: -36.76 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.62 2.66 -71.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493847830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.544 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds