Wall clock time and date at job start Tue Mar 31 2020 20:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.64380 * 2 1 4 4 C 1.54326 * 110.72055 * 123.14041 * 2 1 3 5 5 N 1.47016 * 107.27094 * 140.55239 * 4 2 1 6 6 C 1.34780 * 125.64731 * 181.02210 * 5 4 2 7 7 O 1.21287 * 119.99757 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00051 * 0.30431 * 6 5 4 9 9 C 1.53781 * 113.61512 * 278.85891 * 8 6 5 10 10 C 1.53950 * 87.02076 * 220.04889 * 9 8 6 11 11 C 1.53004 * 113.53616 * 270.81321 * 10 9 8 12 12 C 1.52998 * 113.74448 * 139.94491 * 10 9 8 13 13 C 1.53782 * 87.11280 * 25.36366 * 10 9 8 14 14 C 1.47426 * 108.70465 * 1.29142 * 5 4 2 15 15 C 1.55130 * 104.72040 * 335.54881 * 14 5 4 16 16 H 1.09004 * 110.90234 * 155.27275 * 15 14 5 17 17 N 1.46893 * 111.22375 * 279.17686 * 15 14 5 18 18 C 1.46895 * 111.00283 * 274.92867 * 17 15 14 19 19 C 1.50697 * 109.47688 * 180.02562 * 18 17 15 20 20 O 1.21296 * 119.99771 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00207 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99701 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00330 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99672 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99950 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99761 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47529 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47170 * 120.00470 * 26 24 22 29 29 H 1.48498 * 109.47562 * 240.00068 * 26 24 22 30 30 H 1.09007 * 109.46939 * 304.16350 * 1 2 3 31 31 H 1.09003 * 109.46851 * 64.15781 * 1 2 3 32 32 H 1.08999 * 109.47226 * 184.16014 * 1 2 3 33 33 H 1.09006 * 109.87921 * 21.13675 * 4 2 1 34 34 H 1.08995 * 109.88351 * 259.97842 * 4 2 1 35 35 H 1.09000 * 112.84986 * 50.05820 * 8 6 5 36 36 H 1.09003 * 113.61296 * 334.57130 * 9 8 6 37 37 H 1.09008 * 113.61085 * 105.46772 * 9 8 6 38 38 H 1.09003 * 109.47284 * 157.49563 * 11 10 9 39 39 H 1.08999 * 109.46845 * 277.49434 * 11 10 9 40 40 H 1.08996 * 109.47298 * 37.49447 * 11 10 9 41 41 H 1.09003 * 109.47083 * 322.40431 * 12 10 9 42 42 H 1.09002 * 109.47251 * 82.39695 * 12 10 9 43 43 H 1.08998 * 109.47599 * 202.40130 * 12 10 9 44 44 H 1.09001 * 113.61683 * 220.09098 * 13 10 9 45 45 H 1.09001 * 113.61257 * 89.18347 * 13 10 9 46 46 H 1.09004 * 110.36576 * 94.48090 * 14 5 4 47 47 H 1.08995 * 110.36628 * 216.80167 * 14 5 4 48 48 H 1.00901 * 110.99698 * 150.98192 * 17 15 14 49 49 H 1.09004 * 109.47181 * 300.00776 * 18 17 15 50 50 H 1.09009 * 109.46955 * 60.00135 * 18 17 15 51 51 H 0.96992 * 119.99727 * 0.02562 * 21 19 18 52 52 H 0.97005 * 119.99617 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2444 -1.5495 0.7417 6 6 3.9922 -2.3811 1.4939 7 8 4.9383 -2.9586 1.0014 8 6 3.6491 -2.5981 2.9451 9 6 4.1673 -1.4871 3.8735 10 6 4.5196 -2.6004 4.8767 11 6 3.3781 -2.9415 5.8366 12 6 5.8540 -2.3842 5.5934 13 6 4.6149 -3.5498 3.6708 14 6 3.4666 -1.2468 -0.6840 15 6 2.0789 -0.7976 -1.2124 16 1 2.1850 -0.1554 -2.0868 17 7 1.2243 -1.9540 -1.5125 18 6 1.4843 -2.4638 -2.8654 19 6 0.5908 -3.6466 -3.1369 20 8 -0.1864 -4.0272 -2.2870 21 7 0.6554 -4.2816 -4.3240 22 6 -0.1578 -5.3573 -4.5711 23 1 -0.8504 -5.6957 -3.8147 24 6 -0.0916 -6.0116 -5.7951 25 7 0.7509 -5.5995 -6.7156 26 14 -1.1991 -7.4777 -6.1316 27 1 -2.0493 -7.7391 -4.9424 28 1 -2.0637 -7.1864 -7.3033 29 1 -0.3653 -8.6729 -6.4168 30 1 -0.3633 0.5771 0.8504 31 1 -0.3633 0.4480 -0.9249 32 1 -0.3633 -1.0249 0.0745 33 1 1.3129 -1.4731 1.5801 34 1 2.3740 -0.0990 1.9979 35 1 2.5980 -2.8414 3.0998 36 1 5.0379 -0.9611 3.4814 37 1 3.3867 -0.8123 4.2249 38 1 3.5202 -3.9494 6.2266 39 1 3.3728 -2.2299 6.6623 40 1 2.4281 -2.8882 5.3050 41 1 6.5748 -1.9548 4.8976 42 1 5.7096 -1.7038 6.4327 43 1 6.2283 -3.3398 5.9606 44 1 4.1951 -4.5380 3.8588 45 1 5.6080 -3.5888 3.2232 46 1 4.1948 -0.4429 -0.7921 47 1 3.8031 -2.1382 -1.2131 48 1 0.2492 -1.7233 -1.3942 49 1 1.2801 -1.6797 -3.5946 50 1 2.5274 -2.7703 -2.9440 51 1 1.2772 -3.9774 -5.0034 52 1 0.7973 -6.0565 -7.5700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502713178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:23 Heat of formation + Delta-G solvation = -55.505870 kcal Electronic energy + Delta-G solvation = -29977.117679 eV Core-core repulsion = 25976.778646 eV Total energy + Delta-G solvation = -4000.339033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81531 -39.44534 -38.16128 -37.44488 -34.53617 -33.76216 -32.39839 -31.26845 -31.17959 -29.09315 -27.71111 -26.69008 -26.28982 -25.92608 -24.48792 -23.76312 -21.95106 -19.79545 -19.44065 -18.99296 -18.46930 -17.89345 -17.23061 -16.71283 -16.10638 -15.57283 -15.34975 -15.27412 -14.70663 -14.50423 -14.25076 -14.01182 -13.93241 -13.59220 -13.48102 -13.40269 -13.19547 -13.01054 -12.85842 -12.54833 -12.44954 -12.21986 -12.11561 -12.03040 -11.79413 -11.64808 -11.53699 -11.29570 -11.23285 -11.08534 -11.02148 -10.96605 -10.73095 -10.53662 -10.33599 -10.33414 -10.21411 -9.59466 -9.51008 -8.58878 -8.43458 -8.07343 -7.94950 -6.40678 -3.81372 2.69872 3.04241 3.17182 3.27663 3.34893 3.91329 4.03735 4.16581 4.21295 4.26171 4.33180 4.38961 4.51517 4.53937 4.73130 4.87360 5.04549 5.12454 5.16614 5.20933 5.25606 5.27757 5.34251 5.35693 5.38408 5.45149 5.46511 5.52249 5.55344 5.58679 5.66935 5.70290 5.72275 5.75489 5.80937 5.84891 5.87399 5.92692 5.95710 5.99308 6.12065 6.15548 6.22820 6.28114 6.37047 7.19775 7.56432 7.58170 7.64956 8.07471 8.27165 8.62163 9.18935 9.55395 10.06587 10.77165 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002391 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.861030 B =11709.664444 C =12586.364220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.115 3.885 5 N -0.604 5.604 6 C 0.539 3.461 7 O -0.543 6.543 8 C -0.131 4.131 9 C -0.112 4.112 10 C -0.090 4.090 11 C -0.129 4.129 12 C -0.134 4.134 13 C -0.108 4.108 14 C 0.115 3.885 15 C 0.073 3.927 16 H 0.064 0.936 17 N -0.657 5.657 18 C 0.049 3.951 19 C 0.442 3.558 20 O -0.584 6.584 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.354 0.646 49 H 0.044 0.956 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 14.920 20.164 25.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.009 4.009 5 N -0.337 5.337 6 C 0.328 3.672 7 O -0.420 6.420 8 C -0.152 4.152 9 C -0.150 4.150 10 C -0.090 4.090 11 C -0.186 4.186 12 C -0.192 4.192 13 C -0.146 4.146 14 C -0.008 4.008 15 C -0.038 4.038 16 H 0.082 0.918 17 N -0.294 5.294 18 C -0.083 4.083 19 C 0.227 3.773 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.178 0.822 49 H 0.062 0.938 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.573 13.759 20.632 25.656 hybrid contribution -0.616 0.139 -1.436 1.569 sum 5.956 13.899 19.196 24.436 Atomic orbital electron populations 1.21819 0.93625 1.03337 1.02224 1.22329 0.96815 0.98680 0.94204 0.89390 1.22014 0.88073 0.94389 0.96391 1.48248 1.29785 1.44735 1.10945 1.20101 0.81764 0.77553 0.87748 1.90690 1.29447 1.48109 1.73773 1.22676 1.01807 1.00048 0.90695 1.23016 1.01122 0.95539 0.95338 1.21822 0.96183 0.96816 0.94215 1.21611 0.97007 1.01587 0.98402 1.21710 0.95755 1.01591 1.00096 1.22966 1.00210 0.97196 0.94239 1.22325 0.95903 1.01027 0.81586 1.22749 0.93459 0.91160 0.96467 0.91835 1.60038 1.10700 1.32012 1.26628 1.21722 1.00716 0.96627 0.89247 1.19768 0.87175 0.86581 0.83735 1.90516 1.41938 1.68470 1.45873 1.41866 1.36430 1.28291 1.13434 1.19743 1.16927 1.05932 1.00153 0.87895 1.25269 0.97829 0.99455 0.95465 1.69622 1.36519 1.41706 1.06428 0.85800 0.79550 0.80561 0.78431 1.19230 1.20783 1.20720 0.91999 0.92089 0.90680 0.90928 0.91867 0.87057 0.89830 0.90836 0.92176 0.92386 0.92267 0.92490 0.92684 0.92413 0.90954 0.88710 0.91565 0.89898 0.82193 0.93783 0.89673 0.77462 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.16 37.16 0.30 -1.02 16 2 C -0.10 -0.91 3.46 -88.78 -0.31 -1.21 16 3 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.11 1.11 6.06 -3.07 -0.02 1.09 16 5 N -0.60 -7.76 3.32 -170.38 -0.57 -8.33 16 6 C 0.54 7.80 7.37 -10.98 -0.08 7.71 16 7 O -0.54 -10.02 16.16 5.55 0.09 -9.93 16 8 C -0.13 -1.41 2.99 -90.96 -0.27 -1.68 16 9 C -0.11 -0.93 6.76 -25.83 -0.17 -1.11 16 10 C -0.09 -0.72 1.39 -153.61 -0.21 -0.93 16 11 C -0.13 -0.88 9.07 37.16 0.34 -0.54 16 12 C -0.13 -0.97 9.20 37.16 0.34 -0.63 16 13 C -0.11 -1.14 6.55 -25.92 -0.17 -1.31 16 14 C 0.11 1.49 6.57 -2.41 -0.02 1.48 16 15 C 0.07 0.86 3.12 -65.45 -0.20 0.65 16 16 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 17 N -0.66 -10.32 5.89 -105.60 -0.62 -10.94 16 18 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 19 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 20 O -0.58 -15.94 15.78 5.54 0.09 -15.85 16 21 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 22 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 26 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.81 6.56 -51.93 -0.34 0.47 16 33 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 1.11 7.64 -51.93 -0.40 0.71 16 36 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 37 H 0.07 0.50 8.10 -51.92 -0.42 0.08 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.40 7.34 -51.93 -0.38 0.02 16 41 H 0.06 0.43 7.96 -51.93 -0.41 0.02 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 45 H 0.09 1.15 7.41 -51.93 -0.38 0.76 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 1.32 7.42 -51.93 -0.39 0.93 16 48 H 0.35 5.59 5.59 -39.29 -0.22 5.37 16 49 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 50 H 0.09 1.47 7.55 -51.92 -0.39 1.07 16 51 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 412.12 15.07 6.21 6.21 Total: -1.00 -33.93 412.12 -9.03 -42.96 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -9.04 Total: 12.54 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -0.83 Total: 5.74 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.52 Total: -57.98 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.18 Total: -25.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.93 -9.03 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502713178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.547 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds