Wall clock time and date at job start Tue Mar 31 2020 20:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.64380 * 2 1 4 4 C 1.54326 * 110.72055 * 123.14041 * 2 1 3 5 5 N 1.47016 * 107.27094 * 140.55239 * 4 2 1 6 6 C 1.34780 * 125.64731 * 181.02210 * 5 4 2 7 7 O 1.21287 * 119.99757 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00051 * 0.30431 * 6 5 4 9 9 C 1.53781 * 113.61512 * 278.85891 * 8 6 5 10 10 C 1.53950 * 87.02076 * 220.04889 * 9 8 6 11 11 C 1.53004 * 113.53616 * 270.81321 * 10 9 8 12 12 C 1.52998 * 113.74448 * 139.94491 * 10 9 8 13 13 C 1.53782 * 87.11280 * 25.36366 * 10 9 8 14 14 C 1.47426 * 108.70465 * 1.29142 * 5 4 2 15 15 C 1.55130 * 104.72040 * 335.54881 * 14 5 4 16 16 H 1.09004 * 110.90234 * 155.27275 * 15 14 5 17 17 N 1.46893 * 111.22375 * 279.17686 * 15 14 5 18 18 C 1.46895 * 111.00283 * 274.92867 * 17 15 14 19 19 C 1.50697 * 109.47688 * 180.02562 * 18 17 15 20 20 O 1.21296 * 119.99771 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00207 * 180.02562 * 19 18 17 22 22 C 1.37098 * 119.99701 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00330 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99672 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99950 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99761 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47529 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47170 * 120.00470 * 26 24 22 29 29 H 1.48498 * 109.47562 * 240.00068 * 26 24 22 30 30 H 1.09007 * 109.46939 * 304.16350 * 1 2 3 31 31 H 1.09003 * 109.46851 * 64.15781 * 1 2 3 32 32 H 1.08999 * 109.47226 * 184.16014 * 1 2 3 33 33 H 1.09006 * 109.87921 * 21.13675 * 4 2 1 34 34 H 1.08995 * 109.88351 * 259.97842 * 4 2 1 35 35 H 1.09000 * 112.84986 * 50.05820 * 8 6 5 36 36 H 1.09003 * 113.61296 * 334.57130 * 9 8 6 37 37 H 1.09008 * 113.61085 * 105.46772 * 9 8 6 38 38 H 1.09003 * 109.47284 * 157.49563 * 11 10 9 39 39 H 1.08999 * 109.46845 * 277.49434 * 11 10 9 40 40 H 1.08996 * 109.47298 * 37.49447 * 11 10 9 41 41 H 1.09003 * 109.47083 * 322.40431 * 12 10 9 42 42 H 1.09002 * 109.47251 * 82.39695 * 12 10 9 43 43 H 1.08998 * 109.47599 * 202.40130 * 12 10 9 44 44 H 1.09001 * 113.61683 * 220.09098 * 13 10 9 45 45 H 1.09001 * 113.61257 * 89.18347 * 13 10 9 46 46 H 1.09004 * 110.36576 * 94.48090 * 14 5 4 47 47 H 1.08995 * 110.36628 * 216.80167 * 14 5 4 48 48 H 1.00901 * 110.99698 * 150.98192 * 17 15 14 49 49 H 1.09004 * 109.47181 * 300.00776 * 18 17 15 50 50 H 1.09009 * 109.46955 * 60.00135 * 18 17 15 51 51 H 0.96992 * 119.99727 * 0.02562 * 21 19 18 52 52 H 0.97005 * 119.99617 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 1.2086 5 7 3.2444 -1.5495 0.7417 6 6 3.9922 -2.3811 1.4939 7 8 4.9383 -2.9586 1.0014 8 6 3.6491 -2.5981 2.9451 9 6 4.1673 -1.4871 3.8735 10 6 4.5196 -2.6004 4.8767 11 6 3.3781 -2.9415 5.8366 12 6 5.8540 -2.3842 5.5934 13 6 4.6149 -3.5498 3.6708 14 6 3.4666 -1.2468 -0.6840 15 6 2.0789 -0.7976 -1.2124 16 1 2.1850 -0.1554 -2.0868 17 7 1.2243 -1.9540 -1.5125 18 6 1.4843 -2.4638 -2.8654 19 6 0.5908 -3.6466 -3.1369 20 8 -0.1864 -4.0272 -2.2870 21 7 0.6554 -4.2816 -4.3240 22 6 -0.1578 -5.3573 -4.5711 23 1 -0.8504 -5.6957 -3.8147 24 6 -0.0916 -6.0116 -5.7951 25 7 0.7509 -5.5995 -6.7156 26 14 -1.1991 -7.4777 -6.1316 27 1 -2.0493 -7.7391 -4.9424 28 1 -2.0637 -7.1864 -7.3033 29 1 -0.3653 -8.6729 -6.4168 30 1 -0.3633 0.5771 0.8504 31 1 -0.3633 0.4480 -0.9249 32 1 -0.3633 -1.0249 0.0745 33 1 1.3129 -1.4731 1.5801 34 1 2.3740 -0.0990 1.9979 35 1 2.5980 -2.8414 3.0998 36 1 5.0379 -0.9611 3.4814 37 1 3.3867 -0.8123 4.2249 38 1 3.5202 -3.9494 6.2266 39 1 3.3728 -2.2299 6.6623 40 1 2.4281 -2.8882 5.3050 41 1 6.5748 -1.9548 4.8976 42 1 5.7096 -1.7038 6.4327 43 1 6.2283 -3.3398 5.9606 44 1 4.1951 -4.5380 3.8588 45 1 5.6080 -3.5888 3.2232 46 1 4.1948 -0.4429 -0.7921 47 1 3.8031 -2.1382 -1.2131 48 1 0.2492 -1.7233 -1.3942 49 1 1.2801 -1.6797 -3.5946 50 1 2.5274 -2.7703 -2.9440 51 1 1.2772 -3.9774 -5.0034 52 1 0.7973 -6.0565 -7.5700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502713178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:22 Heat of formation + Delta-G solvation = -79.019225 kcal Electronic energy + Delta-G solvation = -29978.137295 eV Core-core repulsion = 25976.778646 eV Total energy + Delta-G solvation = -4001.358649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73431 -40.48997 -39.83415 -38.57952 -36.16112 -35.43888 -33.46932 -33.16796 -32.00361 -30.14649 -28.25235 -28.13119 -27.27852 -26.68890 -26.00688 -24.95338 -22.84301 -21.19369 -20.70546 -20.13139 -19.87981 -19.18800 -18.25975 -17.87973 -17.48466 -17.02450 -16.52338 -16.28803 -16.20587 -15.85275 -15.54368 -15.40388 -14.96185 -14.64650 -14.47555 -14.32374 -14.16610 -13.88420 -13.84218 -13.70967 -13.54558 -13.47048 -13.30340 -13.08689 -12.95378 -12.84281 -12.73085 -12.44187 -12.43764 -12.13772 -12.08270 -12.04232 -11.83997 -11.73893 -11.57982 -11.54146 -11.27373 -11.02873 -10.64758 -10.37057 -10.04699 -9.62265 -9.29874 -8.49541 -5.98485 1.34267 1.39360 1.53873 1.62064 2.01410 2.08755 2.26546 2.86280 3.17543 3.31187 3.44814 3.45469 3.57143 3.61454 3.73547 3.78271 3.98319 4.11870 4.25032 4.34560 4.37045 4.39679 4.48769 4.49854 4.53238 4.61571 4.67468 4.69850 4.70953 4.75558 4.78029 4.87040 4.89364 4.92933 4.95291 5.04055 5.06803 5.18389 5.18626 5.22319 5.24042 5.36880 5.38443 5.45938 5.47624 5.60917 5.87240 6.08307 6.42796 6.56568 6.59704 7.09388 7.19444 7.52611 8.07531 8.68202 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.002391 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.861030 B =11709.664444 C =12586.364220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.121 0.879 4 C 0.110 3.890 5 N -0.605 5.605 6 C 0.526 3.474 7 O -0.598 6.598 8 C -0.130 4.130 9 C -0.099 4.099 10 C -0.079 4.079 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.120 4.120 14 C 0.110 3.890 15 C 0.073 3.927 16 H 0.086 0.914 17 N -0.674 5.674 18 C 0.065 3.935 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.354 0.646 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 17.233 21.376 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.139 0.861 4 C -0.012 4.012 5 N -0.337 5.337 6 C 0.317 3.683 7 O -0.479 6.479 8 C -0.151 4.151 9 C -0.137 4.137 10 C -0.079 4.079 11 C -0.185 4.185 12 C -0.191 4.191 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.038 4.038 16 H 0.104 0.896 17 N -0.311 5.311 18 C -0.067 4.067 19 C 0.226 3.774 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.198 1.198 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.178 0.822 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.831 16.121 21.840 27.765 hybrid contribution -0.365 -0.571 -1.810 1.933 sum 5.466 15.550 20.030 25.940 Atomic orbital electron populations 1.21781 0.93279 1.02082 1.03496 1.22387 0.96942 0.99561 0.91851 0.86078 1.22266 0.86740 0.94571 0.97662 1.48421 1.30132 1.44307 1.10838 1.20833 0.81215 0.77045 0.89218 1.90654 1.31912 1.50301 1.75053 1.22755 1.02186 1.01610 0.88577 1.22977 1.01390 0.95223 0.94097 1.21794 0.97213 0.95322 0.93604 1.21622 0.96296 1.02058 0.98489 1.21711 0.95074 1.01974 1.00361 1.22993 0.98974 0.97754 0.96035 1.22400 0.97272 1.00044 0.81671 1.22852 0.92048 0.90294 0.98571 0.89600 1.59970 1.11356 1.34567 1.25235 1.21532 0.99029 0.94734 0.91431 1.20850 0.86853 0.87319 0.82423 1.90480 1.43684 1.69857 1.46821 1.41950 1.36525 1.28310 1.14326 1.19693 1.18127 1.07882 1.00534 0.90349 1.26078 0.98942 1.01689 0.94735 1.69682 1.37115 1.42603 1.06760 0.84856 0.77833 0.77282 0.78265 1.19762 1.19278 1.19756 0.89603 0.91761 0.93340 0.91661 0.88645 0.86105 0.90504 0.88237 0.92268 0.90726 0.92106 0.93263 0.90982 0.92457 0.91444 0.91101 0.89384 0.93758 0.82214 0.90893 0.89286 0.77051 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.16 71.98 0.59 -1.58 16 2 C -0.09 -1.29 3.46 -9.60 -0.03 -1.33 16 3 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 4 C 0.11 1.85 6.06 86.73 0.53 2.37 16 5 N -0.61 -15.17 3.32 -811.35 -2.70 -17.87 16 6 C 0.53 15.58 7.37 87.66 0.65 16.23 16 7 O -0.60 -23.47 16.16 -3.05 -0.05 -23.52 16 8 C -0.13 -2.75 2.99 -11.01 -0.03 -2.78 16 9 C -0.10 -1.45 6.76 31.18 0.21 -1.24 16 10 C -0.08 -1.16 1.39 -51.60 -0.07 -1.23 16 11 C -0.13 -1.45 9.07 71.98 0.65 -0.80 16 12 C -0.13 -1.76 9.20 71.98 0.66 -1.10 16 13 C -0.12 -2.59 6.55 31.12 0.20 -2.39 16 14 C 0.11 2.79 6.57 86.93 0.57 3.36 16 15 C 0.07 1.57 3.12 46.39 0.14 1.71 16 16 H 0.09 1.53 7.94 -2.38 -0.02 1.51 16 17 N -0.67 -20.87 5.89 -488.02 -2.87 -23.74 16 18 C 0.07 2.30 6.02 85.56 0.51 2.82 16 19 C 0.44 21.46 7.82 87.66 0.69 22.15 16 20 O -0.62 -35.13 15.78 -3.08 -0.05 -35.18 16 21 N -0.57 -30.39 5.29 -306.98 -1.62 -32.02 16 22 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 23 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 24 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 25 N -0.92 -50.81 13.05 21.66 0.28 -50.52 16 26 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 28 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 30 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.99 6.56 -2.39 -0.02 0.97 16 33 H 0.07 1.22 7.75 -2.38 -0.02 1.21 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 2.30 7.64 -2.39 -0.02 2.28 16 36 H 0.08 1.26 7.93 -2.39 -0.02 1.24 16 37 H 0.10 0.97 8.10 -2.38 -0.02 0.95 16 38 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.68 7.34 -2.39 -0.02 0.66 16 41 H 0.05 0.72 7.96 -2.39 -0.02 0.70 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 45 H 0.07 1.87 7.41 -2.39 -0.02 1.85 16 46 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 47 H 0.04 1.47 7.42 -2.39 -0.02 1.45 16 48 H 0.35 11.02 5.59 -89.69 -0.50 10.52 16 49 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 50 H 0.09 3.10 7.55 -2.38 -0.02 3.08 16 51 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 52 H 0.28 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -77.73 412.12 1.25 -76.48 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: -0.32 Total: 43.20 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 6.55 Total: 17.26 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.91 Total: -124.15 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -0.10 Total: -58.70 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -77.73 1.25 -76.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502713178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.538 kcal (2) G-P(sol) polarization free energy of solvation -77.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds