Wall clock time and date at job start Tue Mar 31 2020 20:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.34770 * 120.00256 * 84.99846 * 4 2 1 6 6 O 1.21283 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99922 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47061 * 179.97438 * 7 5 4 9 9 C 1.52995 * 117.50164 * 243.74562 * 8 7 5 10 10 C 1.53002 * 117.50035 * 175.08553 * 8 7 5 11 11 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 12 12 C 1.53123 * 109.52095 * 59.68471 * 11 2 1 13 13 C 1.53041 * 109.27667 * 182.43644 * 12 11 2 14 14 N 1.46853 * 109.51968 * 59.18179 * 13 12 11 15 15 C 1.46894 * 110.99667 * 174.15583 * 14 13 12 16 16 C 1.50695 * 109.47707 * 294.21047 * 15 14 13 17 17 O 1.21294 * 119.99585 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00252 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99837 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99937 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00295 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99827 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47223 * 89.99907 * 23 21 19 25 25 H 1.48502 * 109.46846 * 209.99351 * 23 21 19 26 26 H 1.48492 * 109.47423 * 329.99506 * 23 21 19 27 27 C 1.46841 * 111.19823 * 298.25361 * 14 13 12 28 28 C 1.53040 * 109.52172 * 61.74529 * 27 14 13 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 33 33 H 1.08991 * 109.47241 * 299.99575 * 7 5 4 34 34 H 1.09000 * 109.47273 * 60.00364 * 7 5 4 35 35 H 1.09004 * 115.54876 * 29.41551 * 8 7 5 36 36 H 1.09001 * 117.49969 * 0.02562 * 9 8 7 37 37 H 1.09002 * 117.50055 * 145.01977 * 9 8 7 38 38 H 1.09001 * 117.49760 * 214.98174 * 10 8 7 39 39 H 1.08996 * 117.49477 * 0.02562 * 10 8 7 40 40 H 1.08995 * 109.52242 * 179.87162 * 11 2 1 41 41 H 1.09000 * 109.50527 * 302.38122 * 12 11 2 42 42 H 1.09004 * 109.49994 * 62.50228 * 12 11 2 43 43 H 1.08998 * 109.46346 * 299.16703 * 13 12 11 44 44 H 1.08998 * 109.45003 * 179.18883 * 13 12 11 45 45 H 1.09000 * 109.47086 * 54.21355 * 15 14 13 46 46 H 1.09007 * 109.47041 * 174.20512 * 15 14 13 47 47 H 0.96994 * 119.99958 * 0.02562 * 18 16 15 48 48 H 0.97000 * 119.99977 * 180.02562 * 22 21 19 49 49 H 1.08991 * 109.46561 * 301.73066 * 27 14 13 50 50 H 1.08998 * 109.45302 * 181.74809 * 27 14 13 51 51 H 1.09002 * 109.50536 * 180.87786 * 28 27 14 52 52 H 1.09000 * 109.54008 * 60.78163 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8582 1.1586 -2.4116 7 6 2.6490 -0.7286 -3.5877 8 6 2.7000 0.2545 -4.7590 9 6 1.7852 -0.0220 -5.9538 10 6 3.2943 -0.2468 -6.0767 11 6 2.0401 -0.7213 1.2492 12 6 1.5238 -2.1628 1.2543 13 6 1.9864 -2.8606 2.5354 14 7 1.4725 -2.1335 3.7032 15 6 1.7800 -2.8514 4.9474 16 6 1.0290 -4.1576 4.9725 17 8 0.3080 -4.4606 4.0453 18 7 1.1576 -4.9888 6.0257 19 6 0.4739 -6.1769 6.0487 20 1 -0.1674 -6.4470 5.2228 21 6 0.6069 -7.0340 7.1342 22 7 -0.0480 -8.1731 7.1562 23 14 1.7167 -6.5671 8.5625 24 1 0.9326 -5.8113 9.5721 25 1 2.2678 -7.7981 9.1840 26 1 2.8318 -5.7210 8.0669 27 6 1.9927 -0.7610 3.7452 28 6 1.5303 -0.0005 2.5002 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 3.6480 -1.1210 -3.3987 34 1 1.9760 -1.5503 -3.8327 35 1 2.8768 1.2962 -4.4911 36 1 1.1467 -0.9041 -5.9053 37 1 1.3606 0.8377 -6.4722 38 1 3.8620 0.4652 -6.6759 39 1 3.6486 -1.2770 -6.1093 40 1 3.1300 -0.7237 1.2489 41 1 0.4345 -2.1595 1.2147 42 1 1.9184 -2.6937 0.3879 43 1 3.0758 -2.8758 2.5676 44 1 1.6083 -3.8829 2.5487 45 1 2.8511 -3.0471 4.9987 46 1 1.4805 -2.2435 5.8011 47 1 1.7333 -4.7460 6.7676 48 1 0.0445 -8.7713 7.9142 49 1 3.0820 -0.7860 3.7717 50 1 1.6191 -0.2584 4.6373 51 1 1.9294 1.0135 2.5240 52 1 0.4411 0.0376 2.4799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508067008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:27 Heat of formation + Delta-G solvation = -50.186367 kcal Electronic energy + Delta-G solvation = -29331.041941 eV Core-core repulsion = 25330.933579 eV Total energy + Delta-G solvation = -4000.108362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42402 -39.36866 -38.16497 -37.35128 -35.86981 -33.98481 -33.06949 -31.69150 -30.78877 -30.67654 -29.02818 -27.35500 -25.02322 -23.65225 -23.28687 -22.73319 -21.92297 -20.87747 -20.25398 -19.37100 -19.16661 -18.28295 -17.58084 -16.44994 -16.05459 -15.77348 -15.58327 -15.25412 -15.08802 -14.89209 -14.65845 -14.35877 -14.13729 -13.87580 -13.73999 -13.36921 -13.31258 -13.09585 -12.84942 -12.59103 -12.41261 -12.20795 -12.07364 -11.87662 -11.80162 -11.73829 -11.58732 -11.49842 -11.15091 -10.93290 -10.74489 -10.70101 -10.61275 -10.46686 -10.37831 -10.16587 -9.98527 -9.94132 -9.53134 -9.25721 -8.55196 -8.18814 -7.93385 -6.32206 -3.83492 2.44669 2.91571 3.01097 3.05735 3.13931 3.46621 3.72934 3.93346 4.09198 4.31325 4.37617 4.51562 4.56377 4.64012 4.68489 4.76492 4.84791 5.06565 5.13832 5.15792 5.18666 5.22530 5.26573 5.28121 5.31405 5.38140 5.39809 5.54086 5.54729 5.58391 5.64386 5.68924 5.74250 5.75346 5.78889 5.84111 5.92074 5.94406 5.95495 6.00461 6.12065 6.17435 6.34156 6.40495 6.49406 7.21096 7.29922 7.36590 7.58075 8.03235 8.13727 8.59464 8.94390 9.41712 9.82878 10.80917 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.001894 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.219572 B =14779.980193 C =15448.435269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.085 0.915 4 N -0.726 5.726 5 C 0.515 3.485 6 O -0.541 6.541 7 C -0.113 4.113 8 C -0.140 4.140 9 C -0.179 4.179 10 C -0.181 4.181 11 C -0.096 4.096 12 C -0.110 4.110 13 C 0.052 3.948 14 N -0.514 5.514 15 C 0.043 3.957 16 C 0.453 3.547 17 O -0.559 6.559 18 N -0.592 5.592 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.056 3.944 28 C -0.108 4.108 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.104 0.896 45 H 0.047 0.953 46 H 0.089 0.911 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.128 17.052 -17.148 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.379 5.379 5 C 0.302 3.698 6 O -0.418 6.418 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.216 4.216 10 C -0.218 4.218 11 C -0.115 4.115 12 C -0.147 4.147 13 C -0.075 4.075 14 N -0.239 5.239 15 C -0.088 4.088 16 C 0.239 3.761 17 O -0.441 6.441 18 N -0.231 5.231 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.072 4.072 28 C -0.146 4.146 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.038 0.962 44 H 0.122 0.878 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.862 17.513 -17.748 26.144 hybrid contribution 1.888 -0.397 1.465 2.422 sum 9.750 17.116 -16.284 25.557 Atomic orbital electron populations 1.22278 0.95027 1.02818 1.02355 1.20952 0.94463 0.96810 0.83308 0.89718 1.46216 1.67538 1.14255 1.09851 1.20574 0.77355 0.87375 0.84500 1.90683 1.49968 1.16203 1.84958 1.21243 1.03126 0.98565 0.92318 1.22049 1.05120 1.00581 0.88139 1.23048 0.93025 1.03366 1.02118 1.23015 0.96303 1.02365 1.00146 1.21506 1.00134 0.96122 0.93775 1.21674 1.02642 0.93636 0.96782 1.22251 0.95754 1.00346 0.89180 1.61490 1.59620 1.01077 1.01677 1.21867 0.98002 0.95600 0.93347 1.19661 0.86445 0.85638 0.84402 1.90520 1.41329 1.75841 1.36361 1.42223 1.43133 1.19165 1.18607 1.19421 1.23918 0.92952 1.06974 0.86279 1.25034 0.97690 0.95585 0.97859 1.69620 1.41441 1.09722 1.31395 0.86678 0.80804 0.78836 0.83092 1.19611 1.20221 1.19569 1.22088 0.96814 0.89831 0.98507 1.21633 1.02458 0.97747 0.92810 0.91681 0.91126 0.92574 0.76445 0.88498 0.88722 0.86446 0.88785 0.88769 0.88698 0.88725 0.91137 0.89996 0.92312 0.96181 0.87784 0.93535 0.89266 0.79754 0.91634 0.95370 0.90719 0.91564 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.78 37.16 0.33 -1.36 16 2 C 0.15 1.43 2.41 -67.93 -0.16 1.27 16 3 H 0.08 0.92 7.58 -51.93 -0.39 0.53 16 4 N -0.73 -6.26 5.00 -53.80 -0.27 -6.53 16 5 C 0.52 5.12 7.79 -10.99 -0.09 5.03 16 6 O -0.54 -7.42 15.23 5.55 0.08 -7.34 16 7 C -0.11 -0.78 5.98 -27.88 -0.17 -0.95 16 8 C -0.14 -1.11 5.41 -90.62 -0.49 -1.60 16 9 C -0.18 -1.25 10.18 -26.70 -0.27 -1.53 16 10 C -0.18 -1.12 10.25 -26.69 -0.27 -1.40 16 11 C -0.10 -0.93 2.25 -90.50 -0.20 -1.13 16 12 C -0.11 -1.25 4.87 -26.65 -0.13 -1.38 16 13 C 0.05 0.76 5.11 -3.83 -0.02 0.74 16 14 N -0.51 -7.79 4.40 -236.12 -1.04 -8.82 16 15 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 16 C 0.45 10.00 7.46 -10.99 -0.08 9.92 16 17 O -0.56 -14.39 13.90 5.55 0.08 -14.31 16 18 N -0.59 -13.83 5.09 -10.96 -0.06 -13.88 16 19 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 16 20 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.52 13.96 55.50 0.77 -24.75 16 23 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C 0.06 0.64 5.46 -3.84 -0.02 0.62 16 28 C -0.11 -1.08 5.09 -26.65 -0.14 -1.21 16 29 H 0.06 0.68 6.38 -51.93 -0.33 0.35 16 30 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.71 6.93 -40.82 -0.28 2.43 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.12 1.14 7.31 -51.93 -0.38 0.76 16 36 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.07 6.31 -51.93 -0.33 0.74 16 42 H 0.06 0.56 6.62 -51.93 -0.34 0.21 16 43 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 1.92 5.78 -51.93 -0.30 1.62 16 45 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.09 1.28 7.99 -51.93 -0.41 0.86 16 47 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.07 0.80 8.01 -51.93 -0.42 0.38 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.08 0.86 6.31 -51.93 -0.33 0.54 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -33.42 402.54 -9.76 -43.18 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -8.69 Total: 11.85 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.99 Total: 0.12 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.59 Total: -53.99 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.16 Total: -21.65 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.42 -9.76 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508067008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.011 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds