Wall clock time and date at job start Tue Mar 31 2020 20:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47381 * 2 1 4 4 C 1.50703 * 109.47318 * 120.00020 * 2 1 3 5 5 O 1.21280 * 120.00291 * 119.99792 * 4 2 1 6 6 N 1.34777 * 119.99822 * 300.00140 * 4 2 1 7 7 C 1.46501 * 119.99888 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46963 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.50255 * 305.07672 * 8 7 6 10 10 C 1.53116 * 109.53871 * 65.17705 * 8 7 6 11 11 C 1.53117 * 109.16069 * 177.61721 * 10 8 7 12 12 C 1.53037 * 109.27699 * 302.34499 * 11 10 8 13 13 N 1.46843 * 109.52453 * 59.18251 * 12 11 10 14 14 C 1.46906 * 110.99927 * 174.16364 * 13 12 11 15 15 C 1.50698 * 109.46688 * 294.20426 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99634 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00399 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00062 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99693 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00141 * 179.72913 * 20 18 17 23 23 H 1.48502 * 109.46967 * 270.27331 * 22 20 18 24 24 H 1.48505 * 109.47170 * 30.26803 * 22 20 18 25 25 H 1.48498 * 109.47513 * 150.27417 * 22 20 18 26 26 C 1.46850 * 111.19388 * 298.25695 * 13 12 11 27 27 C 1.52998 * 109.47553 * 239.99916 * 2 1 3 28 28 C 1.52997 * 117.50116 * 128.74571 * 27 2 1 29 29 C 1.53003 * 117.49566 * 60.08626 * 27 2 1 30 30 H 1.09003 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47359 * 300.00124 * 1 2 3 32 32 H 1.09000 * 109.47136 * 59.99934 * 1 2 3 33 33 H 0.97006 * 120.00039 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47282 * 60.00364 * 7 6 4 35 35 H 1.09003 * 109.47204 * 299.99856 * 7 6 4 36 36 H 1.09006 * 109.52183 * 297.52211 * 10 8 7 37 37 H 1.08994 * 109.52190 * 57.70738 * 10 8 7 38 38 H 1.08997 * 109.50579 * 62.28691 * 11 10 8 39 39 H 1.09000 * 109.49834 * 182.40682 * 11 10 8 40 40 H 1.09003 * 109.45874 * 299.16269 * 12 11 10 41 41 H 1.09005 * 109.46164 * 179.19878 * 12 11 10 42 42 H 1.09003 * 109.46625 * 174.21009 * 14 13 12 43 43 H 1.08993 * 109.47154 * 54.21151 * 14 13 12 44 44 H 0.96991 * 120.00493 * 0.02562 * 17 15 14 45 45 H 0.97005 * 120.00032 * 359.72836 * 21 20 18 46 46 H 1.09004 * 109.45882 * 181.75751 * 26 13 12 47 47 H 1.08999 * 109.46501 * 301.72473 * 26 13 12 48 48 H 1.09003 * 115.55229 * 274.42015 * 27 2 1 49 49 H 1.09002 * 117.50143 * 0.02562 * 28 27 2 50 50 H 1.09006 * 117.50026 * 145.02654 * 28 27 2 51 51 H 1.09007 * 117.49568 * 214.98076 * 29 27 2 52 52 H 1.08998 * 117.50232 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.6841 -0.2199 4.9000 9 1 1.9711 0.8308 4.8566 10 6 0.1585 -0.3308 4.9678 11 6 -0.3378 0.3416 6.2508 12 6 0.3302 -0.3196 7.4586 13 7 1.7883 -0.1860 7.3472 14 6 2.4567 -0.6867 8.5557 15 6 2.0994 0.1910 9.7275 16 8 1.3602 1.1400 9.5712 17 7 2.6003 -0.0791 10.9492 18 6 2.2748 0.7191 12.0153 19 1 1.6167 1.5641 11.8762 20 6 2.7917 0.4410 13.2748 21 7 3.5921 -0.5874 13.4441 22 14 2.3542 1.5330 14.7258 23 1 3.3425 2.6364 14.8306 24 1 0.9969 2.1015 14.5261 25 1 2.3755 0.7293 15.9744 26 6 2.2934 -0.8648 6.1469 27 6 2.0400 -0.7212 -1.2492 28 6 3.0763 0.0039 -2.1100 29 6 1.6374 -0.1483 -2.6096 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5390 2.5436 34 1 3.2846 -0.9412 3.6510 35 1 1.8309 -1.9684 3.6506 36 1 -0.2816 0.1655 4.1028 37 1 -0.1305 -1.3817 4.9719 38 1 -0.0827 1.4010 6.2286 39 1 -1.4193 0.2285 6.3260 40 1 0.0634 -1.3761 7.4879 41 1 -0.0102 0.1663 8.3731 42 1 3.5364 -0.6716 8.4064 43 1 2.1316 -1.7079 8.7541 44 1 3.1911 -0.8381 11.0742 45 1 3.8189 -1.1547 12.6906 46 1 3.3791 -0.7748 6.1087 47 1 2.0176 -1.9187 6.1824 48 1 2.1253 -1.8046 -1.1647 49 1 3.3951 0.9947 -1.7862 50 1 3.8432 -0.6024 -2.5922 51 1 1.4583 -0.8548 -3.4201 52 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566870086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:11 Heat of formation + Delta-G solvation = -61.110652 kcal Electronic energy + Delta-G solvation = -29041.744146 eV Core-core repulsion = 25041.162071 eV Total energy + Delta-G solvation = -4000.582075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43164 -39.39392 -38.04592 -37.50799 -35.42326 -34.26952 -33.24195 -32.48895 -31.11968 -30.99839 -27.51239 -26.34490 -25.19484 -24.42411 -22.90863 -22.66731 -22.08353 -21.35121 -20.13499 -19.59222 -19.53240 -17.90383 -17.71005 -16.56407 -16.18642 -15.90210 -15.57767 -15.36191 -14.96078 -14.83773 -14.63833 -14.33192 -14.14957 -13.87494 -13.75150 -13.56319 -13.54988 -13.26634 -12.75088 -12.73023 -12.60377 -12.40210 -12.17264 -11.89333 -11.84541 -11.49804 -11.37068 -11.20665 -11.11029 -10.94591 -10.75375 -10.72379 -10.43167 -10.40383 -10.36278 -10.22113 -9.96596 -9.85543 -9.49557 -9.31454 -8.49090 -8.04074 -7.90934 -6.75072 -3.88238 2.39007 2.82808 3.30927 3.34879 3.43540 3.54025 3.84099 3.90811 4.15586 4.27846 4.29828 4.47651 4.57498 4.64629 4.66675 4.74672 4.80652 4.90634 4.95625 5.00726 5.18175 5.21654 5.24241 5.27255 5.29238 5.37154 5.39230 5.44509 5.50121 5.53548 5.56394 5.63726 5.67969 5.68058 5.72373 5.80088 5.86127 5.91104 5.93116 6.01151 6.04349 6.06987 6.19002 6.40280 6.48543 7.20880 7.22348 7.36468 7.81715 7.96286 8.08554 8.60850 8.80882 9.48192 9.89006 10.68416 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.001679 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.275889 B =16674.034888 C =17025.594492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.097 0.903 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.727 5.727 7 C 0.125 3.875 8 C -0.095 4.095 9 H 0.087 0.913 10 C -0.114 4.114 11 C -0.113 4.113 12 C 0.050 3.950 13 N -0.513 5.513 14 C 0.046 3.954 15 C 0.447 3.553 16 O -0.571 6.571 17 N -0.577 5.577 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.010 4.010 21 N -0.902 5.902 22 Si 1.094 2.906 23 H -0.285 1.285 24 H -0.284 1.284 25 H -0.281 1.281 26 C 0.064 3.936 27 C -0.135 4.135 28 C -0.178 4.178 29 C -0.178 4.178 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.375 0.625 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.116 0.884 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.095 0.905 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -0.694 -27.781 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.115 0.885 4 C 0.304 3.696 5 O -0.415 6.415 6 N -0.379 5.379 7 C 0.001 3.999 8 C -0.114 4.114 9 H 0.106 0.894 10 C -0.152 4.152 11 C -0.150 4.150 12 C -0.077 4.077 13 N -0.238 5.238 14 C -0.085 4.085 15 C 0.232 3.768 16 O -0.454 6.454 17 N -0.215 5.215 18 C -0.511 4.511 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.541 5.541 22 Si 0.920 3.080 23 H -0.211 1.211 24 H -0.210 1.210 25 H -0.207 1.207 26 C -0.065 4.065 27 C -0.154 4.154 28 C -0.215 4.215 29 C -0.215 4.215 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.208 0.792 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.134 0.866 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.113 0.887 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.046 -0.043 -26.330 26.809 hybrid contribution -0.172 -1.231 -1.458 1.916 sum -5.218 -1.274 -27.788 28.302 Atomic orbital electron populations 1.21757 0.92472 1.03030 1.02679 1.20865 0.97460 0.99995 0.91881 0.88534 1.20527 0.79978 0.84582 0.84483 1.90698 1.37657 1.26351 1.86762 1.46019 1.53987 1.32244 1.05643 1.21369 0.99310 0.96188 0.83023 1.21398 0.95970 1.01197 0.92830 0.89425 1.21662 0.94502 1.00856 0.98157 1.21535 0.99063 1.00949 0.93488 1.22279 0.86841 0.97859 1.00728 1.61456 1.05268 1.56422 1.00619 1.21833 0.99697 0.96444 0.90527 1.19656 0.85671 0.87966 0.83461 1.90484 1.39521 1.31393 1.84019 1.41950 1.43980 1.28054 1.07496 1.20562 1.30941 1.11501 0.88088 0.88285 1.26501 0.95144 0.99445 1.00127 1.70872 1.33697 1.15576 1.33974 0.83089 0.76189 0.74550 0.74182 1.21114 1.20965 1.20682 1.21991 0.99637 0.95302 0.89601 1.22041 1.03543 1.00128 0.89675 1.23027 0.92563 1.01897 1.03977 1.22989 0.98210 1.03240 0.97088 0.91844 0.92003 0.91247 0.76461 0.91268 0.91477 0.92221 0.92208 0.90858 0.91762 0.96130 0.87899 0.89403 0.93585 0.79199 0.92739 0.90608 0.94932 0.86634 0.88853 0.88716 0.88686 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.93 37.15 0.33 -0.40 16 2 C -0.08 -0.55 2.88 -91.78 -0.26 -0.82 16 3 H 0.10 0.54 7.90 -51.93 -0.41 0.13 16 4 C 0.52 5.11 7.15 -10.98 -0.08 5.03 16 5 O -0.54 -7.51 15.65 5.56 0.09 -7.43 16 6 N -0.73 -5.99 5.20 -60.29 -0.31 -6.30 16 7 C 0.13 1.19 5.07 -4.04 -0.02 1.17 16 8 C -0.09 -0.95 2.38 -90.54 -0.22 -1.17 16 9 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 10 C -0.11 -1.11 5.13 -26.61 -0.14 -1.25 16 11 C -0.11 -1.39 6.09 -26.65 -0.16 -1.55 16 12 C 0.05 0.79 5.10 -3.84 -0.02 0.78 16 13 N -0.51 -8.26 4.40 -236.11 -1.04 -9.30 16 14 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 15 C 0.45 10.43 7.46 -10.99 -0.08 10.35 16 16 O -0.57 -15.20 13.90 5.55 0.08 -15.12 16 17 N -0.58 -14.44 5.28 -10.96 -0.06 -14.49 16 18 C -0.38 -10.68 9.68 -14.93 -0.14 -10.82 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 20 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 21 N -0.90 -25.26 13.68 55.50 0.76 -24.50 16 22 Si 1.09 24.27 29.92 -169.99 -5.09 19.18 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.06 0.78 4.74 -3.83 -0.02 0.76 16 27 C -0.14 -1.03 4.75 -90.62 -0.43 -1.46 16 28 C -0.18 -1.20 10.18 -26.69 -0.27 -1.47 16 29 C -0.18 -1.02 9.74 -26.69 -0.26 -1.28 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.26 7.57 -51.93 -0.39 -0.14 16 32 H 0.07 0.28 7.29 -51.93 -0.38 -0.09 16 33 H 0.40 2.42 7.10 -40.82 -0.29 2.13 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.46 7.27 -51.93 -0.38 0.09 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 2.02 5.78 -51.93 -0.30 1.72 16 42 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 43 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.38 8.70 6.73 -40.82 -0.27 8.43 16 45 H 0.26 7.04 6.78 -40.82 -0.28 6.76 16 46 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 47 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.12 1.10 7.47 -51.93 -0.39 0.71 16 49 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.44 7.61 -51.93 -0.40 0.05 16 LS Contribution 409.99 15.07 6.18 6.18 Total: -1.00 -33.91 409.99 -10.27 -44.17 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.98 Total: 9.31 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.90 Total: -1.71 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.65 Total: -54.59 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.55 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.09 Total: 19.18 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.91 -10.27 -44.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566870086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.936 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds