Wall clock time and date at job start Tue Mar 31 2020 20:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47381 * 2 1 4 4 C 1.50703 * 109.47318 * 120.00020 * 2 1 3 5 5 O 1.21280 * 120.00291 * 119.99792 * 4 2 1 6 6 N 1.34777 * 119.99822 * 300.00140 * 4 2 1 7 7 C 1.46501 * 119.99888 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46963 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.50255 * 305.07672 * 8 7 6 10 10 C 1.53116 * 109.53871 * 65.17705 * 8 7 6 11 11 C 1.53117 * 109.16069 * 177.61721 * 10 8 7 12 12 C 1.53037 * 109.27699 * 302.34499 * 11 10 8 13 13 N 1.46843 * 109.52453 * 59.18251 * 12 11 10 14 14 C 1.46906 * 110.99927 * 174.16364 * 13 12 11 15 15 C 1.50698 * 109.46688 * 294.20426 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99634 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00399 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00062 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99693 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00141 * 179.72913 * 20 18 17 23 23 H 1.48502 * 109.46967 * 270.27331 * 22 20 18 24 24 H 1.48505 * 109.47170 * 30.26803 * 22 20 18 25 25 H 1.48498 * 109.47513 * 150.27417 * 22 20 18 26 26 C 1.46850 * 111.19388 * 298.25695 * 13 12 11 27 27 C 1.52998 * 109.47553 * 239.99916 * 2 1 3 28 28 C 1.52997 * 117.50116 * 128.74571 * 27 2 1 29 29 C 1.53003 * 117.49566 * 60.08626 * 27 2 1 30 30 H 1.09003 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47359 * 300.00124 * 1 2 3 32 32 H 1.09000 * 109.47136 * 59.99934 * 1 2 3 33 33 H 0.97006 * 120.00039 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47282 * 60.00364 * 7 6 4 35 35 H 1.09003 * 109.47204 * 299.99856 * 7 6 4 36 36 H 1.09006 * 109.52183 * 297.52211 * 10 8 7 37 37 H 1.08994 * 109.52190 * 57.70738 * 10 8 7 38 38 H 1.08997 * 109.50579 * 62.28691 * 11 10 8 39 39 H 1.09000 * 109.49834 * 182.40682 * 11 10 8 40 40 H 1.09003 * 109.45874 * 299.16269 * 12 11 10 41 41 H 1.09005 * 109.46164 * 179.19878 * 12 11 10 42 42 H 1.09003 * 109.46625 * 174.21009 * 14 13 12 43 43 H 1.08993 * 109.47154 * 54.21151 * 14 13 12 44 44 H 0.96991 * 120.00493 * 0.02562 * 17 15 14 45 45 H 0.97005 * 120.00032 * 359.72836 * 21 20 18 46 46 H 1.09004 * 109.45882 * 181.75751 * 26 13 12 47 47 H 1.08999 * 109.46501 * 301.72473 * 26 13 12 48 48 H 1.09003 * 115.55229 * 274.42015 * 27 2 1 49 49 H 1.09002 * 117.50143 * 0.02562 * 28 27 2 50 50 H 1.09006 * 117.50026 * 145.02654 * 28 27 2 51 51 H 1.09007 * 117.49568 * 214.98076 * 29 27 2 52 52 H 1.08998 * 117.50232 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.6841 -0.2199 4.9000 9 1 1.9711 0.8308 4.8566 10 6 0.1585 -0.3308 4.9678 11 6 -0.3378 0.3416 6.2508 12 6 0.3302 -0.3196 7.4586 13 7 1.7883 -0.1860 7.3472 14 6 2.4567 -0.6867 8.5557 15 6 2.0994 0.1910 9.7275 16 8 1.3602 1.1400 9.5712 17 7 2.6003 -0.0791 10.9492 18 6 2.2748 0.7191 12.0153 19 1 1.6167 1.5641 11.8762 20 6 2.7917 0.4410 13.2748 21 7 3.5921 -0.5874 13.4441 22 14 2.3542 1.5330 14.7258 23 1 3.3425 2.6364 14.8306 24 1 0.9969 2.1015 14.5261 25 1 2.3755 0.7293 15.9744 26 6 2.2934 -0.8648 6.1469 27 6 2.0400 -0.7212 -1.2492 28 6 3.0763 0.0039 -2.1100 29 6 1.6374 -0.1483 -2.6096 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5390 2.5436 34 1 3.2846 -0.9412 3.6510 35 1 1.8309 -1.9684 3.6506 36 1 -0.2816 0.1655 4.1028 37 1 -0.1305 -1.3817 4.9719 38 1 -0.0827 1.4010 6.2286 39 1 -1.4193 0.2285 6.3260 40 1 0.0634 -1.3761 7.4879 41 1 -0.0102 0.1663 8.3731 42 1 3.5364 -0.6716 8.4064 43 1 2.1316 -1.7079 8.7541 44 1 3.1911 -0.8381 11.0742 45 1 3.8189 -1.1547 12.6906 46 1 3.3791 -0.7748 6.1087 47 1 2.0176 -1.9187 6.1824 48 1 2.1253 -1.8046 -1.1647 49 1 3.3951 0.9947 -1.7862 50 1 3.8432 -0.6024 -2.5922 51 1 1.4583 -0.8548 -3.4201 52 1 1.0088 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566870086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:10 Heat of formation + Delta-G solvation = -84.552230 kcal Electronic energy + Delta-G solvation = -29042.760649 eV Core-core repulsion = 25041.162071 eV Total energy + Delta-G solvation = -4001.598578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.22914 -40.72000 -39.49270 -38.20206 -36.61656 -36.05856 -34.23974 -33.30767 -33.00977 -31.91555 -28.97931 -27.16202 -26.33759 -25.73841 -24.09264 -23.17060 -23.04259 -22.13860 -21.35918 -20.88413 -20.38846 -19.94382 -18.43098 -18.04084 -17.24134 -17.06785 -16.51881 -16.39625 -16.23842 -16.04499 -15.55943 -15.50963 -15.42881 -15.11725 -14.97655 -14.76302 -14.45527 -14.04671 -13.87226 -13.72586 -13.39128 -13.32285 -13.13573 -13.06545 -12.89038 -12.85529 -12.64586 -12.29733 -12.09001 -11.93976 -11.88868 -11.85897 -11.65488 -11.61750 -11.36300 -11.30349 -11.27096 -10.93821 -10.72436 -10.30045 -10.09083 -10.07904 -9.25329 -8.92153 -6.05851 1.52462 1.54712 1.65191 1.81876 2.01585 2.11223 2.40168 2.70213 2.93882 3.16776 3.24110 3.64039 3.66203 3.75556 3.77482 3.86537 4.00363 4.09496 4.14329 4.19670 4.29191 4.33446 4.35853 4.39283 4.44830 4.46602 4.51045 4.53134 4.61144 4.68606 4.75682 4.79236 4.88366 4.91569 4.99032 5.00643 5.05447 5.06619 5.15777 5.26103 5.26895 5.31304 5.34635 5.41905 5.50348 5.60450 5.94472 5.99334 6.19172 6.55760 6.58801 6.76257 7.26030 7.45355 7.94347 8.55563 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.001679 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.275889 B =16674.034888 C =17025.594492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 H 0.116 0.884 4 C 0.515 3.485 5 O -0.586 6.586 6 N -0.715 5.715 7 C 0.134 3.866 8 C -0.083 4.083 9 H 0.085 0.915 10 C -0.106 4.106 11 C -0.106 4.106 12 C 0.050 3.950 13 N -0.530 5.530 14 C 0.057 3.943 15 C 0.446 3.554 16 O -0.606 6.606 17 N -0.589 5.589 18 C -0.408 4.408 19 H 0.073 0.927 20 C -0.043 4.043 21 N -0.918 5.918 22 Si 1.136 2.864 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.273 1.273 26 C 0.061 3.939 27 C -0.153 4.153 28 C -0.186 4.186 29 C -0.160 4.160 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.414 0.586 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.383 0.617 45 H 0.259 0.741 46 H 0.083 0.917 47 H 0.042 0.958 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.099 0.901 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -0.066 -29.533 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.094 4.094 3 H 0.134 0.866 4 C 0.302 3.698 5 O -0.466 6.466 6 N -0.368 5.368 7 C 0.010 3.990 8 C -0.102 4.102 9 H 0.104 0.896 10 C -0.144 4.144 11 C -0.144 4.144 12 C -0.078 4.078 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.234 3.766 16 O -0.491 6.491 17 N -0.229 5.229 18 C -0.537 4.537 19 H 0.091 0.909 20 C -0.241 4.241 21 N -0.558 5.558 22 Si 0.956 3.044 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.198 1.198 26 C -0.067 4.067 27 C -0.172 4.172 28 C -0.223 4.223 29 C -0.197 4.197 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.217 0.783 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.060 0.940 48 H 0.106 0.894 49 H 0.120 0.880 50 H 0.107 0.893 51 H 0.117 0.883 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.751 0.589 -28.109 28.697 hybrid contribution 0.036 -1.446 -0.991 1.753 sum -5.715 -0.858 -29.099 29.668 Atomic orbital electron populations 1.21775 0.90874 1.02744 1.04235 1.20881 0.98614 1.00173 0.89757 0.86627 1.21115 0.79113 0.84012 0.85534 1.90680 1.39888 1.28564 1.87430 1.45916 1.53598 1.32351 1.04899 1.21169 0.98789 0.95919 0.83164 1.21261 0.96191 1.00813 0.91914 0.89618 1.21623 0.94032 1.01111 0.97606 1.21485 0.99621 1.00000 0.93319 1.22199 0.87100 0.98091 1.00373 1.61440 1.05371 1.57542 1.01093 1.21723 1.01129 0.95668 0.88922 1.20736 0.83876 0.87746 0.84268 1.90465 1.40677 1.33177 1.84791 1.42010 1.44800 1.28328 1.07713 1.20540 1.31648 1.11856 0.89699 0.90853 1.27814 0.94248 0.99852 1.02182 1.70943 1.34533 1.16219 1.34089 0.82588 0.76605 0.73575 0.71634 1.19651 1.20231 1.19820 1.22103 1.00216 0.95678 0.88654 1.21985 1.05131 0.98908 0.91178 1.23110 0.93107 1.02062 1.04042 1.23067 0.97403 1.03513 0.95675 0.93039 0.90510 0.89655 0.74839 0.92124 0.92044 0.89422 0.91791 0.92154 0.90453 0.95360 0.92460 0.87224 0.91780 0.78279 0.93024 0.89856 0.94026 0.89354 0.88012 0.89305 0.88303 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.93 71.98 0.64 -0.39 16 2 C -0.07 -0.85 2.88 -11.54 -0.03 -0.89 16 3 H 0.12 0.93 7.90 -2.39 -0.02 0.91 16 4 C 0.51 9.47 7.15 87.66 0.63 10.10 16 5 O -0.59 -16.37 15.65 -3.03 -0.05 -16.42 16 6 N -0.72 -10.16 5.20 -463.04 -2.41 -12.57 16 7 C 0.13 2.30 5.07 86.38 0.44 2.74 16 8 C -0.08 -1.47 2.38 -10.74 -0.03 -1.50 16 9 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 10 C -0.11 -1.76 5.13 30.67 0.16 -1.60 16 11 C -0.11 -2.47 6.09 30.65 0.19 -2.29 16 12 C 0.05 1.56 5.10 86.33 0.44 2.00 16 13 N -0.53 -16.56 4.40 -900.92 -3.96 -20.52 16 14 C 0.06 1.96 5.45 85.56 0.47 2.42 16 15 C 0.45 21.21 7.46 87.66 0.65 21.87 16 16 O -0.61 -33.33 13.90 -3.07 -0.04 -33.37 16 17 N -0.59 -30.11 5.28 -306.98 -1.62 -31.74 16 18 C -0.41 -23.42 9.68 84.04 0.81 -22.61 16 19 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 20 C -0.04 -2.34 5.50 84.93 0.47 -1.88 16 21 N -0.92 -51.55 13.68 21.66 0.30 -51.25 16 22 Si 1.14 48.78 29.92 68.60 2.05 50.83 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.06 1.39 4.74 86.32 0.41 1.80 16 27 C -0.15 -2.21 4.75 -10.79 -0.05 -2.26 16 28 C -0.19 -2.31 10.18 30.62 0.31 -1.99 16 29 C -0.16 -1.51 9.74 30.62 0.30 -1.21 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.35 7.57 -2.38 -0.02 0.33 16 32 H 0.08 0.39 7.29 -2.39 -0.02 0.38 16 33 H 0.41 3.62 7.10 -92.70 -0.66 2.96 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.01 7.27 -2.38 -0.02 0.99 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 2.32 5.78 -2.38 -0.01 2.31 16 42 H 0.11 3.31 7.99 -2.39 -0.02 3.29 16 43 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 44 H 0.38 18.06 6.73 -92.72 -0.62 17.44 16 45 H 0.26 14.07 6.78 -92.70 -0.63 13.45 16 46 H 0.08 1.77 8.02 -2.39 -0.02 1.75 16 47 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.09 1.76 7.47 -2.39 -0.02 1.74 16 49 H 0.10 1.06 8.05 -2.39 -0.02 1.05 16 50 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 52 H 0.11 0.67 7.61 -2.39 -0.02 0.65 16 Total: -1.00 -76.30 409.99 -0.15 -76.45 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.22 Total: 34.27 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.80 Total: 4.31 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -7.70 Total: -116.08 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -0.09 Total: -49.79 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.05 Total: 50.83 kcal Total: -76.30 -0.15 -76.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566870086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.100 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds