Wall clock time and date at job start Tue Mar 31 2020 20:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46890 * 2 1 4 4 C 1.50698 * 109.47455 * 239.99536 * 2 1 3 5 5 O 1.21282 * 119.99817 * 240.00169 * 4 2 1 6 6 N 1.34777 * 119.99845 * 59.99602 * 4 2 1 7 7 C 1.46497 * 119.99721 * 180.27306 * 6 4 2 8 8 C 1.52998 * 109.47118 * 179.72818 * 7 6 4 9 9 N 1.46901 * 109.47322 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99968 * 189.99762 * 9 8 7 11 11 C 1.50700 * 109.46997 * 162.31389 * 10 9 8 12 12 O 1.21296 * 119.99896 * 1.34965 * 11 10 9 13 13 N 1.34775 * 120.00244 * 181.34054 * 11 10 9 14 14 C 1.37094 * 120.00316 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99878 * 0.02562 * 14 13 11 16 16 C 1.38955 * 120.00042 * 180.02562 * 14 13 11 17 17 N 1.31406 * 119.99851 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47251 * 59.99964 * 18 16 14 20 20 H 1.48500 * 109.47119 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47274 * 300.00188 * 18 16 14 22 22 C 1.46899 * 111.00036 * 66.04857 * 9 8 7 23 23 C 1.52995 * 117.50170 * 127.70477 * 22 9 8 24 24 C 1.52997 * 117.49977 * 59.07801 * 22 9 8 25 25 C 1.53004 * 109.46975 * 119.99456 * 2 1 3 26 26 C 1.53784 * 113.61515 * 277.49834 * 25 2 1 27 27 C 1.53784 * 87.08248 * 220.01931 * 26 25 2 28 28 C 1.53784 * 113.61304 * 180.02562 * 25 2 1 29 29 H 1.08992 * 109.46808 * 60.00699 * 1 2 3 30 30 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47445 * 300.00263 * 1 2 3 32 32 H 0.96996 * 119.99969 * 0.02562 * 6 4 2 33 33 H 1.08993 * 109.47842 * 299.72928 * 7 6 4 34 34 H 1.09005 * 109.47090 * 59.73218 * 7 6 4 35 35 H 1.09006 * 109.47340 * 300.00328 * 8 7 6 36 36 H 1.08996 * 109.46941 * 60.00124 * 8 7 6 37 37 H 1.08994 * 109.47619 * 282.32085 * 10 9 8 38 38 H 1.09008 * 109.46925 * 42.32145 * 10 9 8 39 39 H 0.97005 * 119.99639 * 0.02562 * 13 11 10 40 40 H 0.97005 * 120.00027 * 179.97438 * 17 16 14 41 41 H 1.09002 * 115.54736 * 273.41113 * 22 9 8 42 42 H 1.09004 * 117.49611 * 359.97438 * 23 22 9 43 43 H 1.08994 * 117.50306 * 145.01918 * 23 22 9 44 44 H 1.09000 * 117.49727 * 214.97765 * 24 22 9 45 45 H 1.09000 * 117.50125 * 359.97438 * 24 22 9 46 46 H 1.09001 * 112.85077 * 48.80540 * 25 2 1 47 47 H 1.09000 * 113.61130 * 334.56982 * 26 25 2 48 48 H 1.09002 * 113.61424 * 105.46919 * 26 25 2 49 49 H 1.08998 * 113.61465 * 270.88873 * 27 26 25 50 50 H 1.08999 * 113.68736 * 139.99031 * 27 26 25 51 51 H 1.09004 * 113.61066 * 254.52793 * 28 25 2 52 52 H 1.08998 * 113.61727 * 25.43181 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 2.1903 -0.9443 -3.6505 8 6 1.6757 -0.2265 -4.8999 9 7 2.1600 -0.9229 -6.0992 10 6 1.8889 -0.1365 -7.3101 11 6 2.7528 -0.6379 -8.4385 12 8 3.5012 -1.5754 -8.2589 13 7 2.6938 -0.0447 -9.6473 14 6 3.4793 -0.5011 -10.6740 15 1 4.1451 -1.3363 -10.5143 16 6 3.4188 0.1108 -11.9200 17 7 2.6090 1.1273 -12.1141 18 14 4.4886 -0.5115 -13.3191 19 1 4.1587 -1.9318 -13.6005 20 1 4.2392 0.3052 -14.5340 21 1 5.9189 -0.4024 -12.9349 22 6 1.5732 -2.2657 -6.2012 23 6 0.8909 -2.6403 -7.5184 24 6 0.0482 -2.3668 -6.2710 25 6 2.0400 -0.7212 1.2493 26 6 2.0720 0.1678 2.5039 27 6 3.4107 -0.5050 2.8505 28 6 3.5738 -0.7762 1.3459 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.1494 0.5386 -2.5436 33 1 3.2802 -0.9448 -3.6548 34 1 1.8265 -1.9719 -3.6463 35 1 0.5857 -0.2260 -4.8957 36 1 2.0395 0.8010 -4.9042 37 1 0.8387 -0.2399 -7.5829 38 1 2.1132 0.9131 -7.1195 39 1 2.0954 0.7052 -9.7908 40 1 2.5670 1.5548 -12.9839 41 1 2.1059 -3.0533 -5.6683 42 1 0.8770 -1.8902 -8.3091 43 1 0.9747 -3.6744 -7.8523 44 1 -0.4224 -3.2211 -5.7843 45 1 -0.5198 -1.4370 -6.2407 46 1 1.5573 -1.6855 1.4081 47 1 2.1620 1.2314 2.2831 48 1 1.2758 -0.0520 3.2151 49 1 3.3027 -1.4100 3.4483 50 1 4.1548 0.1822 3.2533 51 1 3.9904 -1.7583 1.1221 52 1 4.0743 0.0295 0.8088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567445465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:42 Heat of formation + Delta-G solvation = -20.413442 kcal Electronic energy + Delta-G solvation = -29292.407883 eV Core-core repulsion = 25293.590572 eV Total energy + Delta-G solvation = -3998.817311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50025 -39.56046 -38.41978 -37.28408 -35.21940 -33.86321 -33.62510 -32.82593 -31.19873 -29.35865 -26.53685 -26.25708 -25.63496 -24.29536 -23.76124 -22.62186 -21.87243 -20.39760 -19.97504 -19.65610 -18.80368 -17.76932 -17.28701 -16.86998 -16.36698 -15.90286 -15.65902 -15.56185 -15.08375 -14.81189 -14.50857 -14.08941 -14.04606 -13.85475 -13.41424 -13.38065 -13.09147 -12.91567 -12.67963 -12.59882 -12.54689 -12.25037 -11.97181 -11.90158 -11.58734 -11.50952 -11.48559 -11.19611 -10.98755 -10.95651 -10.83137 -10.62915 -10.43727 -10.42696 -10.37567 -10.19076 -9.90739 -9.71911 -9.44139 -9.13626 -8.47580 -7.93831 -7.88704 -6.39205 -3.79643 2.55177 2.92591 3.21649 3.27032 3.31706 3.87465 3.98302 4.08153 4.21298 4.26397 4.34150 4.35435 4.62143 4.67565 4.77510 4.85209 4.94441 4.98401 5.05788 5.11486 5.15027 5.18522 5.19996 5.28457 5.36385 5.39148 5.42902 5.46065 5.49382 5.60881 5.62851 5.66653 5.73569 5.76405 5.82381 5.90576 5.95456 6.00673 6.04147 6.17359 6.24925 6.26391 6.30963 6.32629 6.47872 7.12938 7.25858 7.36685 7.57454 8.08531 8.12752 8.65197 9.21453 9.57234 10.10130 10.78655 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.001858 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.749129 B =15065.379134 C =15371.951912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.096 0.904 4 C 0.516 3.484 5 O -0.532 6.532 6 N -0.731 5.731 7 C 0.125 3.875 8 C 0.047 3.953 9 N -0.480 5.480 10 C 0.039 3.961 11 C 0.447 3.553 12 O -0.567 6.567 13 N -0.569 5.569 14 C -0.296 4.296 15 H 0.102 0.898 16 C 0.021 3.979 17 N -0.904 5.904 18 Si 0.930 3.070 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.043 3.957 23 C -0.166 4.166 24 C -0.228 4.228 25 C -0.089 4.089 26 C -0.136 4.136 27 C -0.147 4.147 28 C -0.124 4.124 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.390 0.610 40 H 0.271 0.729 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 2.093 25.206 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.114 0.886 4 C 0.301 3.699 5 O -0.408 6.408 6 N -0.383 5.383 7 C 0.001 3.999 8 C -0.081 4.081 9 N -0.202 5.202 10 C -0.093 4.093 11 C 0.232 3.768 12 O -0.449 6.449 13 N -0.207 5.207 14 C -0.426 4.426 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.546 5.546 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.066 4.066 23 C -0.203 4.203 24 C -0.267 4.267 25 C -0.108 4.108 26 C -0.173 4.173 27 C -0.184 4.184 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.223 0.777 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.866 0.795 25.257 26.186 hybrid contribution -1.085 0.798 -1.182 1.791 sum -7.951 1.593 24.076 25.405 Atomic orbital electron populations 1.21751 0.92942 1.02786 1.02549 1.21380 0.97411 1.00507 0.93043 0.88601 1.20604 0.80163 0.84754 0.84330 1.90713 1.37276 1.26093 1.86675 1.45982 1.54221 1.32136 1.05960 1.21234 1.00327 0.96153 0.82150 1.22252 0.97806 0.98073 0.89985 1.61455 1.56950 1.01108 1.00721 1.22013 0.98507 0.97755 0.90977 1.19596 0.87094 0.86564 0.83517 1.90545 1.42032 1.29917 1.82410 1.41847 1.38818 1.31262 1.08731 1.19628 1.19131 1.15249 0.88552 0.88010 1.25231 0.97818 0.96173 0.98766 1.69600 1.37778 1.22341 1.24854 0.85937 0.80089 0.78602 0.79701 1.19974 1.21050 1.19941 1.22607 0.89846 0.92322 1.01832 1.23242 1.01859 1.03371 0.91832 1.23464 0.95842 1.02888 1.04500 1.22352 0.97161 0.98925 0.92339 1.22983 0.97911 0.99137 0.97282 1.22853 0.97537 1.00712 0.97347 1.22801 0.95589 1.02651 0.95098 0.92187 0.92053 0.91387 0.76918 0.90422 0.91215 0.94188 0.90280 0.92791 0.89478 0.77663 0.91923 0.86092 0.87854 0.88613 0.88940 0.89499 0.88918 0.90159 0.91578 0.90345 0.91632 0.90819 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.08 37.16 0.34 -0.45 16 2 C -0.10 -0.74 2.48 -91.77 -0.23 -0.97 16 3 H 0.10 0.57 7.94 -51.93 -0.41 0.16 16 4 C 0.52 5.52 6.96 -10.99 -0.08 5.44 16 5 O -0.53 -7.87 14.85 5.56 0.08 -7.78 16 6 N -0.73 -6.81 5.45 -60.30 -0.33 -7.14 16 7 C 0.13 1.49 5.67 -4.04 -0.02 1.46 16 8 C 0.05 0.55 4.96 -3.82 -0.02 0.53 16 9 N -0.48 -7.67 4.34 -228.08 -0.99 -8.66 16 10 C 0.04 0.67 5.00 -4.97 -0.02 0.64 16 11 C 0.45 10.31 5.84 -10.99 -0.06 10.25 16 12 O -0.57 -15.11 14.79 5.54 0.08 -15.03 16 13 N -0.57 -14.17 5.29 -10.96 -0.06 -14.22 16 14 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 17 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 18 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.04 0.67 4.55 -67.72 -0.31 0.36 16 23 C -0.17 -2.74 8.48 -26.73 -0.23 -2.97 16 24 C -0.23 -2.98 9.26 -26.73 -0.25 -3.23 16 25 C -0.09 -0.71 2.72 -89.80 -0.24 -0.95 16 26 C -0.14 -0.84 7.63 -25.92 -0.20 -1.03 16 27 C -0.15 -1.03 8.08 -25.93 -0.21 -1.24 16 28 C -0.12 -1.12 6.19 -25.93 -0.16 -1.28 16 29 H 0.06 0.27 7.56 -51.93 -0.39 -0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.40 2.55 7.89 -40.82 -0.32 2.23 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.92 7.30 -51.93 -0.38 0.54 16 35 H 0.04 0.42 6.87 -51.93 -0.36 0.06 16 36 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 37 H 0.05 0.86 5.99 -51.93 -0.31 0.55 16 38 H 0.09 1.34 7.78 -51.92 -0.40 0.94 16 39 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.12 1.91 8.03 -51.93 -0.42 1.50 16 42 H 0.10 1.94 4.92 -51.93 -0.26 1.69 16 43 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.07 7.15 -51.93 -0.37 0.70 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.44 7.96 -51.93 -0.41 0.02 16 48 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 52 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -32.64 410.67 -10.17 -42.81 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -8.91 Total: 12.77 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.93 Total: -1.30 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.65 Total: -53.75 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.16 Total: -22.81 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.64 -10.17 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567445465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.398 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds