Wall clock time and date at job start Tue Mar 31 2020 20:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46890 * 2 1 4 4 C 1.50698 * 109.47455 * 239.99536 * 2 1 3 5 5 O 1.21282 * 119.99817 * 240.00169 * 4 2 1 6 6 N 1.34777 * 119.99845 * 59.99602 * 4 2 1 7 7 C 1.46497 * 119.99721 * 180.27306 * 6 4 2 8 8 C 1.52998 * 109.47118 * 179.72818 * 7 6 4 9 9 N 1.46901 * 109.47322 * 180.02562 * 8 7 6 10 10 C 1.46904 * 110.99968 * 189.99762 * 9 8 7 11 11 C 1.50700 * 109.46997 * 162.31389 * 10 9 8 12 12 O 1.21296 * 119.99896 * 1.34965 * 11 10 9 13 13 N 1.34775 * 120.00244 * 181.34054 * 11 10 9 14 14 C 1.37094 * 120.00316 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99878 * 0.02562 * 14 13 11 16 16 C 1.38955 * 120.00042 * 180.02562 * 14 13 11 17 17 N 1.31406 * 119.99851 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47251 * 59.99964 * 18 16 14 20 20 H 1.48500 * 109.47119 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47274 * 300.00188 * 18 16 14 22 22 C 1.46899 * 111.00036 * 66.04857 * 9 8 7 23 23 C 1.52995 * 117.50170 * 127.70477 * 22 9 8 24 24 C 1.52997 * 117.49977 * 59.07801 * 22 9 8 25 25 C 1.53004 * 109.46975 * 119.99456 * 2 1 3 26 26 C 1.53784 * 113.61515 * 277.49834 * 25 2 1 27 27 C 1.53784 * 87.08248 * 220.01931 * 26 25 2 28 28 C 1.53784 * 113.61304 * 180.02562 * 25 2 1 29 29 H 1.08992 * 109.46808 * 60.00699 * 1 2 3 30 30 H 1.09002 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47445 * 300.00263 * 1 2 3 32 32 H 0.96996 * 119.99969 * 0.02562 * 6 4 2 33 33 H 1.08993 * 109.47842 * 299.72928 * 7 6 4 34 34 H 1.09005 * 109.47090 * 59.73218 * 7 6 4 35 35 H 1.09006 * 109.47340 * 300.00328 * 8 7 6 36 36 H 1.08996 * 109.46941 * 60.00124 * 8 7 6 37 37 H 1.08994 * 109.47619 * 282.32085 * 10 9 8 38 38 H 1.09008 * 109.46925 * 42.32145 * 10 9 8 39 39 H 0.97005 * 119.99639 * 0.02562 * 13 11 10 40 40 H 0.97005 * 120.00027 * 179.97438 * 17 16 14 41 41 H 1.09002 * 115.54736 * 273.41113 * 22 9 8 42 42 H 1.09004 * 117.49611 * 359.97438 * 23 22 9 43 43 H 1.08994 * 117.50306 * 145.01918 * 23 22 9 44 44 H 1.09000 * 117.49727 * 214.97765 * 24 22 9 45 45 H 1.09000 * 117.50125 * 359.97438 * 24 22 9 46 46 H 1.09001 * 112.85077 * 48.80540 * 25 2 1 47 47 H 1.09000 * 113.61130 * 334.56982 * 26 25 2 48 48 H 1.09002 * 113.61424 * 105.46919 * 26 25 2 49 49 H 1.08998 * 113.61465 * 270.88873 * 27 26 25 50 50 H 1.08999 * 113.68736 * 139.99031 * 27 26 25 51 51 H 1.09004 * 113.61066 * 254.52793 * 28 25 2 52 52 H 1.08998 * 113.61727 * 25.43181 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 2.1903 -0.9443 -3.6505 8 6 1.6757 -0.2265 -4.8999 9 7 2.1600 -0.9229 -6.0992 10 6 1.8889 -0.1365 -7.3101 11 6 2.7528 -0.6379 -8.4385 12 8 3.5012 -1.5754 -8.2589 13 7 2.6938 -0.0447 -9.6473 14 6 3.4793 -0.5011 -10.6740 15 1 4.1451 -1.3363 -10.5143 16 6 3.4188 0.1108 -11.9200 17 7 2.6090 1.1273 -12.1141 18 14 4.4886 -0.5115 -13.3191 19 1 4.1587 -1.9318 -13.6005 20 1 4.2392 0.3052 -14.5340 21 1 5.9189 -0.4024 -12.9349 22 6 1.5732 -2.2657 -6.2012 23 6 0.8909 -2.6403 -7.5184 24 6 0.0482 -2.3668 -6.2710 25 6 2.0400 -0.7212 1.2493 26 6 2.0720 0.1678 2.5039 27 6 3.4107 -0.5050 2.8505 28 6 3.5738 -0.7762 1.3459 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.1494 0.5386 -2.5436 33 1 3.2802 -0.9448 -3.6548 34 1 1.8265 -1.9719 -3.6463 35 1 0.5857 -0.2260 -4.8957 36 1 2.0395 0.8010 -4.9042 37 1 0.8387 -0.2399 -7.5829 38 1 2.1132 0.9131 -7.1195 39 1 2.0954 0.7052 -9.7908 40 1 2.5670 1.5548 -12.9839 41 1 2.1059 -3.0533 -5.6683 42 1 0.8770 -1.8902 -8.3091 43 1 0.9747 -3.6744 -7.8523 44 1 -0.4224 -3.2211 -5.7843 45 1 -0.5198 -1.4370 -6.2407 46 1 1.5573 -1.6855 1.4081 47 1 2.1620 1.2314 2.2831 48 1 1.2758 -0.0520 3.2151 49 1 3.3027 -1.4100 3.4483 50 1 4.1548 0.1822 3.2533 51 1 3.9904 -1.7583 1.1221 52 1 4.0743 0.0295 0.8088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567445465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:41 Heat of formation + Delta-G solvation = -43.258068 kcal Electronic energy + Delta-G solvation = -29293.398501 eV Core-core repulsion = 25293.590572 eV Total energy + Delta-G solvation = -3999.807929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31873 -40.91400 -39.26059 -38.85456 -36.21840 -35.85132 -34.53410 -33.71217 -33.19299 -30.55430 -27.92548 -26.86613 -26.21751 -26.04954 -24.67844 -23.49623 -23.05760 -21.57125 -21.04138 -20.42107 -20.26978 -19.68496 -18.23901 -17.95355 -17.57555 -17.29819 -16.54643 -16.49254 -16.31639 -16.03049 -15.63835 -15.62084 -15.29315 -14.97112 -14.85160 -14.54792 -14.14224 -13.75048 -13.51632 -13.45988 -13.42226 -13.26212 -13.16021 -13.03651 -12.99998 -12.72234 -12.54444 -12.40819 -12.29721 -12.15624 -12.12301 -12.08364 -11.61056 -11.46435 -11.40633 -11.29563 -11.07135 -10.94996 -10.55801 -10.27602 -10.04834 -9.95663 -9.18351 -8.43416 -5.90964 1.40019 1.41440 1.51794 1.72612 2.03627 2.12278 2.31834 2.84691 2.88214 3.23030 3.40278 3.60979 3.74353 3.75046 3.77626 3.95235 3.97037 4.00916 4.05449 4.11037 4.14295 4.30429 4.33842 4.38932 4.45701 4.47068 4.51092 4.55728 4.71135 4.87403 4.88828 4.90857 4.92045 4.95228 4.99569 5.01277 5.08476 5.12995 5.14398 5.16824 5.22757 5.34547 5.43520 5.43839 5.45624 5.65131 5.85278 6.07549 6.13337 6.62324 6.65751 7.17974 7.34427 7.62042 8.19613 8.73820 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.001858 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.749129 B =15065.379134 C =15371.951912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.118 0.882 4 C 0.510 3.490 5 O -0.581 6.581 6 N -0.716 5.716 7 C 0.135 3.865 8 C 0.055 3.945 9 N -0.504 5.504 10 C 0.053 3.947 11 C 0.448 3.552 12 O -0.608 6.608 13 N -0.579 5.579 14 C -0.328 4.328 15 H 0.076 0.924 16 C -0.013 4.013 17 N -0.921 5.921 18 Si 0.989 3.011 19 H -0.274 1.274 20 H -0.270 1.270 21 H -0.274 1.274 22 C 0.031 3.969 23 C -0.194 4.194 24 C -0.184 4.184 25 C -0.093 4.093 26 C -0.120 4.120 27 C -0.145 4.145 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.395 0.605 40 H 0.276 0.724 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.042 0.958 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 4.219 26.597 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.136 0.864 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.369 5.369 7 C 0.011 3.989 8 C -0.072 4.072 9 N -0.227 5.227 10 C -0.078 4.078 11 C 0.235 3.765 12 O -0.493 6.493 13 N -0.217 5.217 14 C -0.457 4.457 15 H 0.094 0.906 16 C -0.213 4.213 17 N -0.562 5.562 18 Si 0.813 3.187 19 H -0.199 1.199 20 H -0.195 1.195 21 H -0.200 1.200 22 C -0.078 4.078 23 C -0.232 4.232 24 C -0.223 4.223 25 C -0.112 4.112 26 C -0.157 4.157 27 C -0.182 4.182 28 C -0.173 4.173 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.253 0.747 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.228 0.772 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.097 0.903 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.061 0.939 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.074 2.971 26.661 28.319 hybrid contribution -0.368 0.072 -1.565 1.609 sum -9.442 3.043 25.096 26.986 Atomic orbital electron populations 1.21762 0.91055 1.02542 1.04283 1.21408 0.98779 1.00746 0.90553 0.86431 1.21343 0.79233 0.84210 0.85479 1.90703 1.39510 1.28433 1.87365 1.45811 1.53903 1.32357 1.04833 1.20933 0.98565 0.95958 0.83485 1.22265 0.99252 0.98148 0.87581 1.61302 1.58519 1.01416 1.01502 1.21824 0.97966 0.98693 0.89273 1.20648 0.86474 0.85257 0.84117 1.90515 1.43900 1.31655 1.83241 1.41896 1.38970 1.31750 1.09091 1.19557 1.20301 1.15602 0.90280 0.90612 1.25950 0.98774 0.96172 1.00378 1.69656 1.38295 1.22687 1.25594 0.85052 0.78292 0.78170 0.77200 1.19923 1.19495 1.19958 1.22562 0.91918 0.92268 1.01059 1.23148 1.05387 1.02270 0.92346 1.23498 0.94001 1.04289 1.00474 1.22362 0.95849 0.99116 0.93866 1.22929 0.97396 0.99387 0.96037 1.22860 0.98593 1.01115 0.95644 1.22816 0.96675 1.00782 0.96981 0.90602 0.93294 0.89531 0.74729 0.93387 0.92685 0.91546 0.88535 0.90776 0.86946 0.77163 0.91447 0.87176 0.90309 0.89451 0.86909 0.87602 0.90280 0.88661 0.90252 0.90323 0.90872 0.93884 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.08 71.98 0.65 -0.44 16 2 C -0.09 -1.17 2.48 -11.54 -0.03 -1.20 16 3 H 0.12 1.00 7.94 -2.39 -0.02 0.98 16 4 C 0.51 10.50 6.96 87.66 0.61 11.11 16 5 O -0.58 -17.82 14.85 -3.04 -0.05 -17.87 16 6 N -0.72 -11.99 5.45 -463.07 -2.52 -14.52 16 7 C 0.14 3.11 5.67 86.38 0.49 3.60 16 8 C 0.05 1.14 4.96 86.30 0.43 1.57 16 9 N -0.50 -15.58 4.34 -875.52 -3.80 -19.38 16 10 C 0.05 1.77 5.00 85.56 0.43 2.20 16 11 C 0.45 21.00 5.84 87.66 0.51 21.51 16 12 O -0.61 -33.68 14.79 -3.08 -0.05 -33.72 16 13 N -0.58 -29.40 5.29 -306.98 -1.62 -31.03 16 14 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 15 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 16 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 17 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 18 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.03 0.95 4.55 44.91 0.20 1.16 16 23 C -0.19 -6.44 8.48 30.59 0.26 -6.18 16 24 C -0.18 -4.36 9.26 30.59 0.28 -4.08 16 25 C -0.09 -1.39 2.72 -10.26 -0.03 -1.41 16 26 C -0.12 -1.18 7.63 31.12 0.24 -0.94 16 27 C -0.14 -1.89 8.08 31.11 0.25 -1.64 16 28 C -0.13 -2.50 6.19 31.11 0.19 -2.31 16 29 H 0.08 0.37 7.56 -2.39 -0.02 0.35 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.42 3.88 7.89 -92.71 -0.73 3.14 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.44 7.30 -2.38 -0.02 1.42 16 35 H 0.07 1.08 6.87 -2.38 -0.02 1.06 16 36 H 0.10 1.71 7.85 -2.39 -0.02 1.69 16 37 H 0.07 2.18 5.99 -2.39 -0.01 2.17 16 38 H 0.11 3.16 7.78 -2.38 -0.02 3.14 16 39 H 0.39 18.99 7.90 -92.70 -0.73 18.25 16 40 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 41 H 0.11 3.59 8.03 -2.39 -0.02 3.57 16 42 H 0.08 3.01 4.92 -2.38 -0.01 2.99 16 43 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.11 2.15 7.15 -2.39 -0.02 2.14 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.09 0.69 7.96 -2.39 -0.02 0.67 16 48 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.04 1.03 7.97 -2.38 -0.02 1.01 16 52 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -75.03 410.67 -0.49 -75.52 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.54 Total: 39.99 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 5.77 Total: 4.86 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -7.66 Total: -114.24 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.09 Total: -51.59 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.03 -0.49 -75.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567445465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.261 kcal (2) G-P(sol) polarization free energy of solvation -75.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds