Wall clock time and date at job start Tue Mar 31 2020 19:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99816 * 2 1 4 4 N 1.34773 * 120.00058 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00113 * 176.66696 * 4 2 1 6 6 C 1.50700 * 110.01437 * 295.30903 * 5 4 2 7 7 O 1.21286 * 119.99546 * 132.78340 * 6 5 4 8 8 N 1.34772 * 120.00243 * 312.78848 * 6 5 4 9 9 C 1.48115 * 127.03497 * 354.71807 * 8 6 5 10 10 C 1.55113 * 103.31737 * 140.73207 * 9 8 6 11 11 H 1.08997 * 110.82891 * 155.60188 * 10 9 8 12 12 C 1.52995 * 110.72374 * 278.98451 * 10 9 8 13 13 C 1.54621 * 102.75451 * 37.26560 * 10 9 8 14 14 H 1.08995 * 110.32320 * 97.20824 * 13 10 9 15 15 C 1.52999 * 110.32355 * 219.32023 * 13 10 9 16 16 N 1.46504 * 109.46814 * 183.56770 * 15 13 10 17 17 C 1.36935 * 119.99788 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99830 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99970 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46863 * 270.00079 * 21 19 17 23 23 H 1.48496 * 109.47090 * 29.99788 * 21 19 17 24 24 H 1.48495 * 109.47240 * 150.00206 * 21 19 17 25 25 C 1.47487 * 127.03416 * 174.68477 * 8 6 5 26 26 C 1.54262 * 110.02963 * 56.70304 * 5 4 2 27 27 C 1.54967 * 104.15873 * 95.75654 * 26 5 4 28 28 C 1.54884 * 102.77896 * 37.88707 * 27 26 5 29 29 C 1.53880 * 110.03051 * 173.92208 * 5 4 2 30 30 H 1.08993 * 109.47432 * 240.00324 * 1 2 3 31 31 H 1.09005 * 109.46910 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47121 * 119.99797 * 1 2 3 33 33 H 0.97003 * 119.99545 * 356.66672 * 4 2 1 34 34 H 1.09006 * 110.66318 * 259.12545 * 9 8 6 35 35 H 1.09004 * 110.65986 * 22.07150 * 9 8 6 36 36 H 1.08998 * 109.46955 * 173.31310 * 12 10 9 37 37 H 1.09005 * 109.47175 * 293.30478 * 12 10 9 38 38 H 1.08997 * 109.47849 * 53.31054 * 12 10 9 39 39 H 1.08996 * 109.47522 * 63.57341 * 15 13 10 40 40 H 1.08999 * 109.46929 * 303.56151 * 15 13 10 41 41 H 0.97004 * 120.00247 * 359.97438 * 16 15 13 42 42 H 0.97005 * 120.00135 * 0.02562 * 20 19 17 43 43 H 1.08998 * 109.91508 * 86.11579 * 25 8 6 44 44 H 1.09004 * 110.07016 * 324.92655 * 25 8 6 45 45 H 1.08998 * 110.48210 * 214.40094 * 26 5 4 46 46 H 1.08995 * 110.48868 * 337.04381 * 26 5 4 47 47 H 1.08998 * 110.71631 * 279.56515 * 27 26 5 48 48 H 1.09004 * 110.91866 * 156.28971 * 27 26 5 49 49 H 1.08996 * 110.48350 * 203.40776 * 28 27 26 50 50 H 1.08998 * 110.60469 * 80.81606 * 28 27 26 51 51 H 1.08997 * 110.03252 * 359.94850 * 29 5 4 52 52 H 1.08989 * 110.03177 * 121.33477 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6441 -1.1683 -0.0732 6 6 4.0943 -0.6014 -1.3950 7 8 4.9723 0.2347 -1.4286 8 7 3.5213 -1.0234 -2.5395 9 6 2.5216 -2.1057 -2.6904 10 6 1.5486 -1.5466 -3.7613 11 1 1.0338 -2.3567 -4.2779 12 6 0.5448 -0.5806 -3.1291 13 6 2.4967 -0.7973 -4.7259 14 1 2.7426 -1.4275 -5.5805 15 6 1.8524 0.5080 -5.1970 16 7 2.7281 1.1600 -6.1739 17 6 2.3568 2.3510 -6.7386 18 1 1.4186 2.8098 -6.4635 19 6 3.1868 2.9691 -7.6638 20 7 4.3304 2.4102 -7.9987 21 14 2.6807 4.5941 -8.4336 22 1 1.9058 4.3343 -9.6735 23 1 1.8401 5.3554 -7.4750 24 1 3.8937 5.3842 -8.7644 25 6 3.7611 -0.5014 -3.8980 26 6 4.2322 -0.3376 1.0860 27 6 4.5582 -1.3881 2.1777 28 6 5.0750 -2.5918 1.3514 29 6 4.1792 -2.6011 0.0955 30 1 -0.3634 -0.5137 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6971 -2.0065 0.0497 34 1 2.9961 -3.0211 -3.0441 35 1 2.0013 -2.2827 -1.7490 36 1 -0.0499 -0.1106 -3.9124 37 1 -0.1122 -1.1294 -2.4543 38 1 1.0809 0.1865 -2.5703 39 1 1.7048 1.1692 -4.3432 40 1 0.8895 0.2915 -5.6598 41 1 3.5709 0.7481 -6.4207 42 1 4.5931 1.5661 -7.5992 43 1 4.6212 -1.0026 -4.3418 44 1 3.9369 0.5737 -3.8600 45 1 5.1398 0.1743 0.7663 46 1 3.4976 0.3794 1.4526 47 1 3.6602 -1.6579 2.7335 48 1 5.3324 -1.0214 2.8518 49 1 4.9553 -3.5188 1.9121 50 1 6.1191 -2.4468 1.0742 51 1 3.3504 -3.2955 0.2331 52 1 4.7639 -2.8867 -0.7789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569847970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:39 Heat of formation + Delta-G solvation = -51.992530 kcal Electronic energy + Delta-G solvation = -32213.632019 eV Core-core repulsion = 28213.445336 eV Total energy + Delta-G solvation = -4000.186683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31480 -39.34297 -38.39813 -37.01721 -34.91927 -33.98929 -32.83808 -31.19094 -30.41029 -29.37553 -28.77286 -27.79540 -26.66263 -25.04000 -23.34222 -22.26300 -21.80648 -21.20890 -20.31097 -19.24351 -19.12093 -17.58992 -17.16510 -16.97051 -16.44989 -16.08208 -15.79433 -15.34921 -15.07448 -14.71659 -14.20673 -14.06101 -13.86952 -13.58484 -13.53885 -13.43728 -13.23387 -12.99161 -12.85044 -12.65202 -12.36535 -12.10716 -12.04136 -11.85024 -11.76891 -11.65984 -11.53426 -11.47813 -11.22349 -10.88615 -10.77570 -10.70327 -10.53404 -10.43726 -10.22550 -10.12936 -9.95329 -9.86649 -9.11228 -9.03722 -8.82394 -8.53574 -6.94571 -6.04621 -3.03962 2.38968 2.55176 2.95664 3.11554 3.55778 3.61794 3.75712 4.14670 4.17530 4.38436 4.45745 4.56753 4.65523 4.72376 4.84793 4.86152 5.00209 5.06310 5.08781 5.11582 5.17740 5.26620 5.32332 5.34520 5.39321 5.42127 5.49104 5.54488 5.60860 5.67832 5.70899 5.71419 5.74538 5.76508 5.93834 5.96061 5.97099 6.06445 6.18833 6.21574 6.25867 6.28919 6.39644 6.43855 6.66518 6.83441 7.19005 7.64927 7.86639 8.03360 8.26848 8.81679 9.28701 10.14966 10.29417 11.44127 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003283 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.969810 B = 8525.920234 C = 8775.882855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.722 5.722 5 C 0.164 3.836 6 C 0.534 3.466 7 O -0.523 6.523 8 N -0.611 5.611 9 C 0.098 3.902 10 C -0.097 4.097 11 H 0.087 0.913 12 C -0.149 4.149 13 C -0.105 4.105 14 H 0.083 0.917 15 C 0.169 3.831 16 N -0.744 5.744 17 C -0.330 4.330 18 H 0.064 0.936 19 C -0.045 4.045 20 N -0.944 5.944 21 Si 1.083 2.917 22 H -0.296 1.296 23 H -0.295 1.295 24 H -0.288 1.288 25 C 0.112 3.888 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.366 0.634 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 -18.125 21.449 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.296 3.704 3 O -0.394 6.394 4 N -0.379 5.379 5 C 0.074 3.926 6 C 0.321 3.679 7 O -0.397 6.397 8 N -0.345 5.345 9 C -0.025 4.025 10 C -0.117 4.117 11 H 0.106 0.894 12 C -0.206 4.206 13 C -0.124 4.124 14 H 0.101 0.899 15 C 0.042 3.958 16 N -0.390 5.390 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.590 5.590 21 Si 0.914 3.086 22 H -0.224 1.224 23 H -0.222 1.222 24 H -0.214 1.214 25 C -0.010 4.010 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.160 4.160 29 C -0.158 4.158 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.199 0.801 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.098 0.902 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.482 -15.521 20.496 26.514 hybrid contribution -0.591 -1.847 0.820 2.106 sum -7.073 -17.368 21.316 28.391 Atomic orbital electron populations 1.22178 0.91535 1.06083 1.04540 1.20845 0.90641 0.83505 0.75453 1.90821 1.70388 1.31140 1.47082 1.46344 1.05709 1.09116 1.76712 1.21142 0.80730 0.97216 0.93503 1.20232 0.81900 0.81705 0.84112 1.90720 1.30725 1.32058 1.86216 1.48676 1.42931 1.36138 1.06800 1.22800 0.89836 0.90259 0.99622 1.22260 0.95595 0.98210 0.95602 0.89447 1.22041 0.98276 0.99210 1.01050 1.22351 0.94356 0.98592 0.97117 0.89861 1.20710 0.93029 0.90026 0.92051 1.42403 1.22012 1.24994 1.49570 1.20035 1.05247 0.98880 1.21978 0.91827 1.25768 0.95341 1.05049 0.98131 1.70846 1.22256 1.19761 1.46109 0.83197 0.75061 0.74927 0.75443 1.22362 1.22166 1.21360 1.22128 0.97081 1.01383 0.80420 1.22706 1.02984 0.97528 0.92665 1.22535 1.00846 0.95275 0.97423 1.22351 0.99617 0.98809 0.95175 1.22428 1.00259 0.93093 1.00045 0.89568 0.88745 0.88603 0.76321 0.91205 0.90176 0.91283 0.93026 0.92069 0.95794 0.96065 0.80109 0.93429 0.92062 0.89536 0.88790 0.89462 0.91586 0.91010 0.91031 0.90952 0.90179 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 10.00 36.01 0.36 -1.00 16 2 C 0.51 5.82 5.91 -10.99 -0.06 5.75 16 3 O -0.52 -8.95 14.58 5.55 0.08 -8.87 16 4 N -0.72 -6.31 3.27 -47.64 -0.16 -6.47 16 5 C 0.16 1.84 0.47 -131.85 -0.06 1.78 16 6 C 0.53 8.64 5.61 -10.99 -0.06 8.58 16 7 O -0.52 -11.09 15.79 5.55 0.09 -11.00 16 8 N -0.61 -8.93 3.19 -169.65 -0.54 -9.48 16 9 C 0.10 0.98 5.91 -2.04 -0.01 0.97 16 10 C -0.10 -1.10 3.61 -88.65 -0.32 -1.42 16 11 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.15 -1.70 7.00 37.16 0.26 -1.44 16 13 C -0.10 -1.66 2.97 -89.25 -0.27 -1.93 16 14 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.17 3.49 4.15 -4.04 -0.02 3.48 16 16 N -0.74 -19.45 5.38 -59.91 -0.32 -19.77 16 17 C -0.33 -9.74 9.99 -15.06 -0.15 -9.89 16 18 H 0.06 1.86 7.83 -52.49 -0.41 1.44 16 19 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 20 N -0.94 -30.24 13.70 55.49 0.76 -29.48 16 21 Si 1.08 27.11 29.92 -169.99 -5.09 22.02 16 22 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.11 1.96 6.35 -2.98 -0.02 1.95 16 26 C -0.12 -1.49 5.43 -25.03 -0.14 -1.63 16 27 C -0.12 -1.02 6.91 -24.70 -0.17 -1.20 16 28 C -0.12 -0.88 6.83 -25.07 -0.17 -1.06 16 29 C -0.12 -0.93 5.78 -25.61 -0.15 -1.08 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.10 0.59 5.01 -51.93 -0.26 0.33 16 33 H 0.40 1.95 7.06 -40.82 -0.29 1.66 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.59 4.81 -51.93 -0.25 0.34 16 36 H 0.07 0.88 6.63 -51.93 -0.34 0.53 16 37 H 0.05 0.40 6.06 -51.93 -0.31 0.09 16 38 H 0.06 0.88 6.21 -51.93 -0.32 0.56 16 39 H 0.02 0.54 6.95 -51.93 -0.36 0.18 16 40 H 0.02 0.44 7.47 -51.93 -0.39 0.05 16 41 H 0.37 9.75 6.39 -40.82 -0.26 9.49 16 42 H 0.25 8.03 6.77 -40.82 -0.28 7.75 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.93 7.57 -51.93 -0.39 1.54 16 45 H 0.09 1.43 6.77 -51.93 -0.35 1.08 16 46 H 0.09 1.22 5.94 -51.93 -0.31 0.91 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.39 7.46 -51.93 -0.39 0.00 16 52 H 0.08 0.68 7.67 -51.94 -0.40 0.28 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -39.32 387.57 -8.75 -48.06 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.34 Total: 8.76 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.07 Total: 0.39 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -0.26 Total: -65.20 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.17 Total: -19.87 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -5.09 Total: 22.02 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.32 -8.75 -48.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569847970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.930 kcal (2) G-P(sol) polarization free energy of solvation -39.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds