Wall clock time and date at job start Tue Mar 31 2020 19:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21283 * 119.99816 * 2 1 4 4 N 1.34773 * 120.00058 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00113 * 176.66696 * 4 2 1 6 6 C 1.50700 * 110.01437 * 295.30903 * 5 4 2 7 7 O 1.21286 * 119.99546 * 132.78340 * 6 5 4 8 8 N 1.34772 * 120.00243 * 312.78848 * 6 5 4 9 9 C 1.48115 * 127.03497 * 354.71807 * 8 6 5 10 10 C 1.55113 * 103.31737 * 140.73207 * 9 8 6 11 11 H 1.08997 * 110.82891 * 155.60188 * 10 9 8 12 12 C 1.52995 * 110.72374 * 278.98451 * 10 9 8 13 13 C 1.54621 * 102.75451 * 37.26560 * 10 9 8 14 14 H 1.08995 * 110.32320 * 97.20824 * 13 10 9 15 15 C 1.52999 * 110.32355 * 219.32023 * 13 10 9 16 16 N 1.46504 * 109.46814 * 183.56770 * 15 13 10 17 17 C 1.36935 * 119.99788 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99830 * 179.97438 * 17 16 15 20 20 N 1.31614 * 119.99976 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99970 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46863 * 270.00079 * 21 19 17 23 23 H 1.48496 * 109.47090 * 29.99788 * 21 19 17 24 24 H 1.48495 * 109.47240 * 150.00206 * 21 19 17 25 25 C 1.47487 * 127.03416 * 174.68477 * 8 6 5 26 26 C 1.54262 * 110.02963 * 56.70304 * 5 4 2 27 27 C 1.54967 * 104.15873 * 95.75654 * 26 5 4 28 28 C 1.54884 * 102.77896 * 37.88707 * 27 26 5 29 29 C 1.53880 * 110.03051 * 173.92208 * 5 4 2 30 30 H 1.08993 * 109.47432 * 240.00324 * 1 2 3 31 31 H 1.09005 * 109.46910 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47121 * 119.99797 * 1 2 3 33 33 H 0.97003 * 119.99545 * 356.66672 * 4 2 1 34 34 H 1.09006 * 110.66318 * 259.12545 * 9 8 6 35 35 H 1.09004 * 110.65986 * 22.07150 * 9 8 6 36 36 H 1.08998 * 109.46955 * 173.31310 * 12 10 9 37 37 H 1.09005 * 109.47175 * 293.30478 * 12 10 9 38 38 H 1.08997 * 109.47849 * 53.31054 * 12 10 9 39 39 H 1.08996 * 109.47522 * 63.57341 * 15 13 10 40 40 H 1.08999 * 109.46929 * 303.56151 * 15 13 10 41 41 H 0.97004 * 120.00247 * 359.97438 * 16 15 13 42 42 H 0.97005 * 120.00135 * 0.02562 * 20 19 17 43 43 H 1.08998 * 109.91508 * 86.11579 * 25 8 6 44 44 H 1.09004 * 110.07016 * 324.92655 * 25 8 6 45 45 H 1.08998 * 110.48210 * 214.40094 * 26 5 4 46 46 H 1.08995 * 110.48868 * 337.04381 * 26 5 4 47 47 H 1.08998 * 110.71631 * 279.56515 * 27 26 5 48 48 H 1.09004 * 110.91866 * 156.28971 * 27 26 5 49 49 H 1.08996 * 110.48350 * 203.40776 * 28 27 26 50 50 H 1.08998 * 110.60469 * 80.81606 * 28 27 26 51 51 H 1.08997 * 110.03252 * 359.94850 * 29 5 4 52 52 H 1.08989 * 110.03177 * 121.33477 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6441 -1.1683 -0.0732 6 6 4.0943 -0.6014 -1.3950 7 8 4.9723 0.2347 -1.4286 8 7 3.5213 -1.0234 -2.5395 9 6 2.5216 -2.1057 -2.6904 10 6 1.5486 -1.5466 -3.7613 11 1 1.0338 -2.3567 -4.2779 12 6 0.5448 -0.5806 -3.1291 13 6 2.4967 -0.7973 -4.7259 14 1 2.7426 -1.4275 -5.5805 15 6 1.8524 0.5080 -5.1970 16 7 2.7281 1.1600 -6.1739 17 6 2.3568 2.3510 -6.7386 18 1 1.4186 2.8098 -6.4635 19 6 3.1868 2.9691 -7.6638 20 7 4.3304 2.4102 -7.9987 21 14 2.6807 4.5941 -8.4336 22 1 1.9058 4.3343 -9.6735 23 1 1.8401 5.3554 -7.4750 24 1 3.8937 5.3842 -8.7644 25 6 3.7611 -0.5014 -3.8980 26 6 4.2322 -0.3376 1.0860 27 6 4.5582 -1.3881 2.1777 28 6 5.0750 -2.5918 1.3514 29 6 4.1792 -2.6011 0.0955 30 1 -0.3634 -0.5137 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6971 -2.0065 0.0497 34 1 2.9961 -3.0211 -3.0441 35 1 2.0013 -2.2827 -1.7490 36 1 -0.0499 -0.1106 -3.9124 37 1 -0.1122 -1.1294 -2.4543 38 1 1.0809 0.1865 -2.5703 39 1 1.7048 1.1692 -4.3432 40 1 0.8895 0.2915 -5.6598 41 1 3.5709 0.7481 -6.4207 42 1 4.5931 1.5661 -7.5992 43 1 4.6212 -1.0026 -4.3418 44 1 3.9369 0.5737 -3.8600 45 1 5.1398 0.1743 0.7663 46 1 3.4976 0.3794 1.4526 47 1 3.6602 -1.6579 2.7335 48 1 5.3324 -1.0214 2.8518 49 1 4.9553 -3.5188 1.9121 50 1 6.1191 -2.4468 1.0742 51 1 3.3504 -3.2955 0.2331 52 1 4.7639 -2.8867 -0.7789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569847970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:38 Heat of formation + Delta-G solvation = -82.388571 kcal Electronic energy + Delta-G solvation = -32214.950090 eV Core-core repulsion = 28213.445336 eV Total energy + Delta-G solvation = -4001.504755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.34221 -40.47102 -39.53702 -38.09751 -36.82938 -34.99570 -34.24964 -32.86264 -31.19488 -30.67789 -29.77330 -28.78752 -27.60611 -26.71482 -25.16124 -23.76124 -22.65118 -22.12997 -21.13699 -20.46309 -20.30058 -19.42359 -18.44729 -17.94387 -17.59152 -17.21723 -16.87615 -16.60527 -16.23150 -16.01216 -15.77917 -15.43683 -15.24482 -14.95668 -14.64094 -14.45123 -14.25105 -14.22945 -13.99196 -13.57049 -13.39580 -13.26573 -13.13465 -13.00991 -12.89876 -12.72366 -12.64050 -12.55603 -12.33791 -12.17580 -11.97989 -11.94539 -11.80505 -11.73284 -11.62799 -11.54910 -11.29097 -11.18669 -10.98046 -10.84856 -10.08470 -9.78509 -9.17802 -8.47872 -5.40901 1.32515 1.51424 1.59496 1.63830 1.77787 1.85997 2.19692 2.65277 3.23064 3.32815 3.36956 3.41412 3.48540 3.66015 3.71359 3.87013 3.97217 4.11885 4.15212 4.19094 4.33122 4.36932 4.40992 4.44059 4.45766 4.49342 4.54190 4.59909 4.64610 4.68383 4.74893 4.77457 4.80654 4.87061 4.90238 4.97652 5.01084 5.05467 5.12148 5.14690 5.18071 5.20572 5.28874 5.39673 5.42302 5.47185 5.51003 6.41690 6.43922 6.53340 7.02289 7.03602 7.25250 7.92689 8.02972 9.04247 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003283 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.969810 B = 8525.920234 C = 8775.882855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.502 3.498 3 O -0.590 6.590 4 N -0.699 5.699 5 C 0.172 3.828 6 C 0.520 3.480 7 O -0.594 6.594 8 N -0.609 5.609 9 C 0.097 3.903 10 C -0.087 4.087 11 H 0.130 0.870 12 C -0.149 4.149 13 C -0.096 4.096 14 H 0.093 0.907 15 C 0.174 3.826 16 N -0.758 5.758 17 C -0.338 4.338 18 H 0.063 0.937 19 C -0.105 4.105 20 N -0.973 5.973 21 Si 1.131 2.869 22 H -0.275 1.275 23 H -0.278 1.278 24 H -0.293 1.293 25 C 0.116 3.884 26 C -0.126 4.126 27 C -0.112 4.112 28 C -0.118 4.118 29 C -0.114 4.114 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.426 0.574 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.023 0.977 39 H -0.001 1.001 40 H 0.033 0.967 41 H 0.359 0.641 42 H 0.243 0.757 43 H 0.059 0.941 44 H 0.021 0.979 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.055 0.945 51 H 0.129 0.871 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.080 -22.533 23.021 34.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.292 3.708 3 O -0.469 6.469 4 N -0.358 5.358 5 C 0.081 3.919 6 C 0.309 3.691 7 O -0.473 6.473 8 N -0.341 5.341 9 C -0.024 4.024 10 C -0.106 4.106 11 H 0.148 0.852 12 C -0.206 4.206 13 C -0.116 4.116 14 H 0.111 0.889 15 C 0.048 3.952 16 N -0.403 5.403 17 C -0.469 4.469 18 H 0.081 0.919 19 C -0.296 4.296 20 N -0.620 5.620 21 Si 0.955 3.045 22 H -0.201 1.201 23 H -0.203 1.203 24 H -0.219 1.219 25 C -0.008 4.008 26 C -0.165 4.165 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.152 4.152 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.134 0.866 33 H 0.268 0.732 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.042 0.958 39 H 0.017 0.983 40 H 0.050 0.950 41 H 0.191 0.809 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.126 0.874 50 H 0.074 0.926 51 H 0.147 0.853 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.958 -20.051 22.096 31.456 hybrid contribution 0.457 -0.415 0.371 0.720 sum -9.500 -20.466 22.468 31.842 Atomic orbital electron populations 1.22188 0.87859 1.05997 1.07342 1.21698 0.92370 0.82978 0.73766 1.90818 1.72010 1.33862 1.50214 1.46132 1.04563 1.09776 1.75340 1.21027 0.82159 0.99101 0.89578 1.21363 0.80962 0.80774 0.85997 1.90679 1.34044 1.35246 1.87369 1.48800 1.43387 1.36814 1.05128 1.23207 0.88626 0.89417 1.01106 1.22379 0.94939 0.98496 0.94816 0.85179 1.22053 0.98483 0.98856 1.01186 1.22266 0.94447 0.96624 0.98225 0.88883 1.20804 0.92951 0.91612 0.89879 1.42653 1.22563 1.24674 1.50408 1.20399 1.05002 0.99979 1.21525 0.91916 1.27304 0.94970 1.08199 0.99137 1.70961 1.23714 1.19962 1.47411 0.82596 0.75000 0.71154 0.75744 1.20142 1.20326 1.21888 1.21863 0.98349 0.97548 0.83063 1.22636 1.00487 0.98509 0.94859 1.22512 1.02021 0.94192 0.96255 1.22368 0.98580 0.99611 0.94999 1.22522 1.01814 0.90794 1.00044 0.85466 0.90493 0.86603 0.73186 0.87988 0.86624 0.92824 0.88094 0.95764 0.98267 0.94967 0.80916 0.94705 0.92272 0.96002 0.93247 0.91791 0.89095 0.91005 0.87401 0.92572 0.85281 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 10.00 71.24 0.71 -1.33 16 2 C 0.50 10.96 5.91 87.66 0.52 11.48 16 3 O -0.59 -21.67 14.58 -3.04 -0.04 -21.71 16 4 N -0.70 -10.16 3.27 -423.02 -1.38 -11.54 16 5 C 0.17 3.72 0.47 3.58 0.00 3.72 16 6 C 0.52 17.74 5.61 87.66 0.49 18.23 16 7 O -0.59 -28.17 15.79 -3.05 -0.05 -28.22 16 8 N -0.61 -17.93 3.19 -809.04 -2.58 -20.51 16 9 C 0.10 1.55 5.91 86.79 0.51 2.06 16 10 C -0.09 -1.66 3.61 -9.52 -0.03 -1.69 16 11 H 0.13 1.56 8.14 -2.39 -0.02 1.55 16 12 C -0.15 -3.00 7.00 71.98 0.50 -2.50 16 13 C -0.10 -3.03 2.97 -9.90 -0.03 -3.06 16 14 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 15 C 0.17 7.41 4.15 86.38 0.36 7.77 16 16 N -0.76 -41.61 5.38 -343.45 -1.85 -43.45 16 17 C -0.34 -20.60 9.99 84.04 0.84 -19.76 16 18 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.11 -6.53 5.50 84.86 0.47 -6.06 16 20 N -0.97 -64.59 13.70 21.65 0.30 -64.30 16 21 Si 1.13 55.52 29.92 68.60 2.05 57.57 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 C 0.12 4.32 6.35 86.53 0.55 4.87 16 26 C -0.13 -3.30 5.43 31.69 0.17 -3.13 16 27 C -0.11 -1.68 6.91 31.91 0.22 -1.46 16 28 C -0.12 -1.35 6.83 31.67 0.22 -1.13 16 29 C -0.11 -1.35 5.78 31.32 0.18 -1.16 16 30 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 1.23 8.12 -2.38 -0.02 1.21 16 32 H 0.12 0.86 5.01 -2.39 -0.01 0.85 16 33 H 0.43 1.52 7.06 -92.71 -0.65 0.87 16 34 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 0.99 4.81 -2.39 -0.01 0.98 16 36 H 0.05 1.26 6.63 -2.39 -0.02 1.24 16 37 H 0.10 1.01 6.06 -2.38 -0.01 1.00 16 38 H 0.02 0.67 6.21 -2.39 -0.01 0.66 16 39 H 0.00 -0.03 6.95 -2.39 -0.02 -0.04 16 40 H 0.03 1.32 7.47 -2.39 -0.02 1.31 16 41 H 0.36 20.34 6.39 -92.71 -0.59 19.75 16 42 H 0.24 16.11 6.77 -92.70 -0.63 15.49 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.02 1.08 7.57 -2.38 -0.02 1.06 16 45 H 0.05 1.71 6.77 -2.39 -0.02 1.70 16 46 H 0.06 1.94 5.94 -2.39 -0.01 1.93 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.13 0.29 7.46 -2.39 -0.02 0.28 16 52 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16 Total: -1.00 -100.56 387.57 1.97 -98.59 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.16 Total: 26.73 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.68 Total: 6.85 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -5.52 Total: -139.81 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.09 Total: -49.93 kcal Atomic # 14 Polarization: 55.52 SS G_CDS: 2.05 Total: 57.57 kcal Total: -100.56 1.97 -98.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569847970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.200 kcal (2) G-P(sol) polarization free energy of solvation -100.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds