Wall clock time and date at job start Tue Mar 31 2020 20:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00271 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.84993 * 336.19005 * 8 7 5 10 10 C 1.53781 * 113.61614 * 107.49783 * 8 7 5 11 11 C 1.53778 * 87.07849 * 89.11738 * 10 8 7 12 12 H 1.08998 * 113.69296 * 270.87152 * 11 10 8 13 13 C 1.53004 * 113.61658 * 139.98423 * 11 10 8 14 14 N 1.46893 * 109.47406 * 87.49776 * 13 11 10 15 15 C 1.46898 * 111.00095 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47303 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00112 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00411 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00557 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99825 * 0.02562 * 19 18 16 21 21 C 1.38941 * 120.00390 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00206 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46946 * 89.99791 * 23 21 19 25 25 H 1.48496 * 109.47127 * 209.99729 * 23 21 19 26 26 H 1.48500 * 109.46949 * 329.99956 * 23 21 19 27 27 C 1.53777 * 87.08604 * 25.43188 * 11 10 8 28 28 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 29 29 C 1.53001 * 117.49742 * 128.74737 * 28 2 1 30 30 C 1.53001 * 117.49801 * 60.08750 * 28 2 1 31 31 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 32 32 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 33 33 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 36 36 H 0.97005 * 119.99463 * 359.97438 * 7 5 4 37 37 H 1.09000 * 113.61467 * 203.66301 * 10 8 7 38 38 H 1.08991 * 113.61330 * 334.57193 * 10 8 7 39 39 H 1.09005 * 109.47341 * 207.50498 * 13 11 10 40 40 H 1.09007 * 109.46668 * 327.49888 * 13 11 10 41 41 H 1.00899 * 110.99859 * 56.04737 * 14 13 11 42 42 H 1.08993 * 109.47301 * 299.99845 * 15 14 13 43 43 H 1.09003 * 109.47378 * 60.00017 * 15 14 13 44 44 H 0.97000 * 119.99776 * 359.97438 * 18 16 15 45 45 H 0.97005 * 120.00135 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.61996 * 220.01715 * 27 11 10 47 47 H 1.09001 * 113.61655 * 89.11126 * 27 11 10 48 48 H 1.08996 * 115.55056 * 274.42490 * 28 2 1 49 49 H 1.08996 * 117.50206 * 0.02562 * 29 28 2 50 50 H 1.09006 * 117.49807 * 145.02460 * 29 28 2 51 51 H 1.08996 * 117.50505 * 214.98026 * 30 28 2 52 52 H 1.09003 * 117.49537 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0118 1.0875 2.3632 7 7 1.9852 -0.3913 3.7002 8 6 1.5972 0.3650 4.8933 9 1 1.4201 1.4205 4.6863 10 6 0.4759 -0.3016 5.7076 11 6 1.5822 -1.0456 6.4739 12 1 1.8677 -1.9944 6.0195 13 6 1.3150 -1.1629 7.9758 14 7 0.5178 -2.3684 8.2388 15 6 0.2408 -2.5137 9.6740 16 6 -0.5765 -3.7587 9.9044 17 8 -0.8962 -4.4567 8.9654 18 7 -0.9512 -4.0972 11.1540 19 6 -1.6942 -5.2302 11.3637 20 1 -1.9789 -5.8517 10.5275 21 6 -2.0801 -5.5794 12.6519 22 7 -2.7919 -6.6657 12.8529 23 14 -1.5871 -4.5049 14.0983 24 1 -2.6333 -3.4769 14.3305 25 1 -1.4416 -5.3463 15.3132 26 1 -0.2944 -3.8372 13.8009 27 6 2.5142 0.1200 6.1032 28 6 2.0401 -0.7214 -1.2492 29 6 3.0764 0.0038 -2.1101 30 6 1.6375 -0.1485 -2.6096 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 2.4891 -1.2152 3.7908 37 1 -0.0894 0.3964 6.3252 38 1 -0.1624 -0.9577 5.1160 39 1 2.2631 -1.2306 8.5094 40 1 0.7680 -0.2840 8.3172 41 1 0.9744 -3.1906 7.8733 42 1 1.1811 -2.5907 10.2197 43 1 -0.3138 -1.6441 10.0269 44 1 -0.6946 -3.5397 11.9051 45 1 -3.0616 -6.9093 13.7523 46 1 3.5213 -0.1957 5.8310 47 1 2.5062 0.9333 6.8289 48 1 2.1252 -1.8047 -1.1646 49 1 3.3952 0.9945 -1.7863 50 1 3.8433 -0.6026 -2.5922 51 1 1.4583 -0.8549 -3.4201 52 1 1.0089 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571197950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:11 Heat of formation + Delta-G solvation = -37.083320 kcal Electronic energy + Delta-G solvation = -28007.118604 eV Core-core repulsion = 24007.578432 eV Total energy + Delta-G solvation = -3999.540171 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63470 -39.20575 -38.41618 -37.92222 -35.34163 -33.93273 -33.53396 -33.22274 -31.65972 -28.99674 -27.91821 -25.93624 -25.67306 -24.26530 -23.46055 -22.65694 -22.07431 -21.05832 -20.07621 -19.62120 -19.23549 -18.29503 -17.38217 -16.49238 -16.16235 -15.85793 -15.67394 -15.64976 -15.07328 -15.00304 -14.75848 -14.50737 -13.95911 -13.89475 -13.69074 -13.59938 -13.33614 -13.12526 -12.81636 -12.67056 -12.45267 -12.34531 -12.08803 -11.97507 -11.83629 -11.71755 -11.64354 -11.45106 -11.16489 -11.10811 -11.01914 -10.70228 -10.62367 -10.59399 -10.37451 -10.29104 -9.97715 -9.93481 -9.57485 -9.24726 -8.57931 -8.19123 -8.11103 -6.31312 -3.82785 2.37713 2.84096 3.01825 3.06670 3.14606 3.40482 3.74225 4.01402 4.10099 4.19161 4.28158 4.34263 4.48426 4.52026 4.57233 4.67096 4.73897 4.76373 4.89433 4.98228 5.04477 5.17879 5.21594 5.25642 5.29881 5.32169 5.35656 5.46949 5.48620 5.49957 5.51250 5.55921 5.60204 5.66294 5.67028 5.72945 5.81308 5.85835 5.93640 5.97340 5.98932 6.03576 6.04699 6.18645 6.42527 7.11365 7.22589 7.57728 7.59544 7.98096 8.14462 8.59787 8.94883 9.42373 9.82888 10.81841 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.001504 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.733537 B =18610.109971 C =19330.379117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 H 0.077 0.923 4 C -0.136 4.136 5 C 0.516 3.484 6 O -0.537 6.537 7 N -0.713 5.713 8 C 0.115 3.885 9 H 0.100 0.900 10 C -0.134 4.134 11 C -0.105 4.105 12 H 0.090 0.910 13 C 0.069 3.931 14 N -0.667 5.667 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.141 4.141 28 C -0.150 4.150 29 C -0.182 4.182 30 C -0.178 4.178 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.401 0.599 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.349 0.651 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.071 0.929 47 H 0.094 0.906 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.613 16.483 -22.378 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.303 3.697 6 O -0.413 6.413 7 N -0.364 5.364 8 C 0.010 3.990 9 H 0.118 0.882 10 C -0.173 4.173 11 C -0.124 4.124 12 H 0.108 0.892 13 C -0.061 4.061 14 N -0.300 5.300 15 C -0.085 4.085 16 C 0.236 3.764 17 O -0.447 6.447 18 N -0.231 5.231 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.179 4.179 28 C -0.168 4.168 29 C -0.219 4.219 30 C -0.215 4.215 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.235 0.765 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.168 0.832 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.113 0.887 48 H 0.122 0.878 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.111 0.889 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.217 16.908 -23.081 31.949 hybrid contribution 1.447 -0.115 1.814 2.324 sum 15.664 16.793 -21.267 31.299 Atomic orbital electron populations 1.21936 0.94241 1.01715 1.02987 1.20447 0.96531 0.98800 0.90423 0.90436 1.21737 1.02968 1.00396 0.92458 1.20718 0.78816 0.85646 0.84551 1.90674 1.39452 1.24640 1.86563 1.45736 1.57780 1.27547 1.05383 1.21888 0.96283 0.96881 0.83946 0.88164 1.23365 0.96409 0.99450 0.98061 1.22556 0.96629 0.97728 0.95439 0.89204 1.21977 0.95176 0.94287 0.94642 1.60037 1.50565 1.05528 1.13835 1.21702 0.98731 0.98547 0.89510 1.19732 0.85345 0.87813 0.83552 1.90563 1.58631 1.54023 1.41445 1.42210 1.49603 1.24732 1.06519 1.19435 1.27755 1.00344 0.95886 0.86303 1.25034 0.97012 0.96569 0.97512 1.69625 1.36435 1.23645 1.22461 0.86667 0.78926 0.80764 0.82990 1.19585 1.20191 1.19563 1.23358 0.98101 0.99296 0.97193 1.22367 1.03622 0.99160 0.91656 1.23046 0.92530 1.02066 1.04290 1.22935 0.98007 1.03390 0.97126 0.90605 0.92864 0.93137 0.88641 0.88812 0.76487 0.89129 0.90882 0.95519 0.90943 0.83169 0.93899 0.89545 0.79700 0.91622 0.91053 0.88710 0.87761 0.88829 0.88957 0.88893 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.78 37.16 0.33 -0.96 16 2 C -0.04 -0.31 2.19 -90.62 -0.20 -0.51 16 3 H 0.08 0.67 7.71 -51.93 -0.40 0.27 16 4 C -0.14 -0.85 5.16 -27.88 -0.14 -1.00 16 5 C 0.52 4.71 7.55 -10.98 -0.08 4.62 16 6 O -0.54 -6.87 13.57 5.56 0.08 -6.79 16 7 N -0.71 -5.44 5.26 -53.02 -0.28 -5.72 16 8 C 0.12 0.99 4.32 -67.12 -0.29 0.70 16 9 H 0.10 1.00 7.46 -51.93 -0.39 0.61 16 10 C -0.13 -1.33 7.43 -25.92 -0.19 -1.52 16 11 C -0.10 -0.94 3.78 -89.81 -0.34 -1.28 16 12 H 0.09 0.81 8.13 -51.93 -0.42 0.38 16 13 C 0.07 0.74 5.52 -3.83 -0.02 0.72 16 14 N -0.67 -10.02 6.13 -115.06 -0.70 -10.72 16 15 C 0.05 0.79 6.17 -4.98 -0.03 0.75 16 16 C 0.45 10.22 7.82 -10.99 -0.09 10.13 16 17 O -0.56 -15.20 15.78 5.55 0.09 -15.12 16 18 N -0.59 -14.11 5.09 -10.97 -0.06 -14.17 16 19 C -0.31 -8.68 10.16 -14.94 -0.15 -8.83 16 20 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 22 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 23 Si 0.88 19.35 27.74 -169.99 -4.72 14.63 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 27 C -0.14 -0.99 7.39 -25.92 -0.19 -1.18 16 28 C -0.15 -0.91 5.15 -90.62 -0.47 -1.37 16 29 C -0.18 -1.03 10.18 -26.69 -0.27 -1.30 16 30 C -0.18 -1.05 9.74 -26.69 -0.26 -1.31 16 31 H 0.08 0.82 5.95 -51.93 -0.31 0.51 16 32 H 0.05 0.42 7.29 -51.93 -0.38 0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 2.15 8.70 -40.82 -0.36 1.80 16 37 H 0.09 0.91 7.90 -51.93 -0.41 0.50 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.76 7.84 -51.93 -0.41 0.36 16 41 H 0.35 5.41 8.42 -39.29 -0.33 5.08 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 48 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 49 H 0.09 0.53 8.05 -51.93 -0.42 0.11 16 50 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 51 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.09 0.58 7.61 -51.93 -0.40 0.19 16 LS Contribution 419.24 15.07 6.32 6.32 Total: -1.00 -34.29 419.24 -10.07 -44.36 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -9.08 Total: 13.52 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.50 Total: -1.29 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.27 Total: -55.62 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.16 Total: -21.91 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.72 Total: 14.63 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.29 -10.07 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571197950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.278 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds