Wall clock time and date at job start Tue Mar 31 2020 20:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00271 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.84993 * 336.19005 * 8 7 5 10 10 C 1.53781 * 113.61614 * 107.49783 * 8 7 5 11 11 C 1.53778 * 87.07849 * 89.11738 * 10 8 7 12 12 H 1.08998 * 113.69296 * 270.87152 * 11 10 8 13 13 C 1.53004 * 113.61658 * 139.98423 * 11 10 8 14 14 N 1.46893 * 109.47406 * 87.49776 * 13 11 10 15 15 C 1.46898 * 111.00095 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47303 * 180.02562 * 15 14 13 17 17 O 1.21293 * 120.00112 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00411 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00557 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99825 * 0.02562 * 19 18 16 21 21 C 1.38941 * 120.00390 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00206 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.46946 * 89.99791 * 23 21 19 25 25 H 1.48496 * 109.47127 * 209.99729 * 23 21 19 26 26 H 1.48500 * 109.46949 * 329.99956 * 23 21 19 27 27 C 1.53777 * 87.08604 * 25.43188 * 11 10 8 28 28 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 29 29 C 1.53001 * 117.49742 * 128.74737 * 28 2 1 30 30 C 1.53001 * 117.49801 * 60.08750 * 28 2 1 31 31 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 32 32 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 33 33 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 35 35 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 36 36 H 0.97005 * 119.99463 * 359.97438 * 7 5 4 37 37 H 1.09000 * 113.61467 * 203.66301 * 10 8 7 38 38 H 1.08991 * 113.61330 * 334.57193 * 10 8 7 39 39 H 1.09005 * 109.47341 * 207.50498 * 13 11 10 40 40 H 1.09007 * 109.46668 * 327.49888 * 13 11 10 41 41 H 1.00899 * 110.99859 * 56.04737 * 14 13 11 42 42 H 1.08993 * 109.47301 * 299.99845 * 15 14 13 43 43 H 1.09003 * 109.47378 * 60.00017 * 15 14 13 44 44 H 0.97000 * 119.99776 * 359.97438 * 18 16 15 45 45 H 0.97005 * 120.00135 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.61996 * 220.01715 * 27 11 10 47 47 H 1.09001 * 113.61655 * 89.11126 * 27 11 10 48 48 H 1.08996 * 115.55056 * 274.42490 * 28 2 1 49 49 H 1.08996 * 117.50206 * 0.02562 * 29 28 2 50 50 H 1.09006 * 117.49807 * 145.02460 * 29 28 2 51 51 H 1.08996 * 117.50505 * 214.98026 * 30 28 2 52 52 H 1.09003 * 117.49537 * 359.97438 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 8 1.0118 1.0875 2.3632 7 7 1.9852 -0.3913 3.7002 8 6 1.5972 0.3650 4.8933 9 1 1.4201 1.4205 4.6863 10 6 0.4759 -0.3016 5.7076 11 6 1.5822 -1.0456 6.4739 12 1 1.8677 -1.9944 6.0195 13 6 1.3150 -1.1629 7.9758 14 7 0.5178 -2.3684 8.2388 15 6 0.2408 -2.5137 9.6740 16 6 -0.5765 -3.7587 9.9044 17 8 -0.8962 -4.4567 8.9654 18 7 -0.9512 -4.0972 11.1540 19 6 -1.6942 -5.2302 11.3637 20 1 -1.9789 -5.8517 10.5275 21 6 -2.0801 -5.5794 12.6519 22 7 -2.7919 -6.6657 12.8529 23 14 -1.5871 -4.5049 14.0983 24 1 -2.6333 -3.4769 14.3305 25 1 -1.4416 -5.3463 15.3132 26 1 -0.2944 -3.8372 13.8009 27 6 2.5142 0.1200 6.1032 28 6 2.0401 -0.7214 -1.2492 29 6 3.0764 0.0038 -2.1101 30 6 1.6375 -0.1485 -2.6096 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 2.4891 -1.2152 3.7908 37 1 -0.0894 0.3964 6.3252 38 1 -0.1624 -0.9577 5.1160 39 1 2.2631 -1.2306 8.5094 40 1 0.7680 -0.2840 8.3172 41 1 0.9744 -3.1906 7.8733 42 1 1.1811 -2.5907 10.2197 43 1 -0.3138 -1.6441 10.0269 44 1 -0.6946 -3.5397 11.9051 45 1 -3.0616 -6.9093 13.7523 46 1 3.5213 -0.1957 5.8310 47 1 2.5062 0.9333 6.8289 48 1 2.1252 -1.8047 -1.1646 49 1 3.3952 0.9945 -1.7863 50 1 3.8433 -0.6026 -2.5922 51 1 1.4583 -0.8549 -3.4201 52 1 1.0089 0.7420 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571197950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:10 Heat of formation + Delta-G solvation = -62.270865 kcal Electronic energy + Delta-G solvation = -28008.210818 eV Core-core repulsion = 24007.578432 eV Total energy + Delta-G solvation = -4000.632385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34661 -40.32289 -39.77913 -38.53782 -36.56492 -35.81415 -34.25091 -33.94172 -33.72730 -30.05176 -28.74371 -27.19619 -26.56828 -25.29874 -24.56484 -23.09786 -22.91235 -21.71364 -21.30939 -20.64525 -20.43809 -19.93758 -18.12450 -17.72111 -17.12963 -17.04446 -16.65393 -16.46600 -16.27587 -15.92605 -15.71211 -15.46035 -15.26435 -15.12506 -14.71382 -14.47763 -14.44791 -14.18073 -14.03942 -13.90904 -13.52970 -13.28586 -13.07848 -13.07122 -12.89134 -12.54341 -12.42868 -12.41235 -12.23758 -12.03822 -11.98134 -11.79878 -11.71072 -11.51673 -11.37829 -11.18554 -11.11902 -10.79462 -10.66265 -10.42113 -10.24886 -9.95897 -9.24146 -8.41447 -6.02602 1.30192 1.36157 1.44855 1.67779 1.95970 2.22014 2.23184 2.74740 2.93794 3.14986 3.38584 3.61965 3.67035 3.76508 3.83345 3.92675 4.03303 4.05432 4.09597 4.17859 4.24509 4.39145 4.43613 4.51060 4.52485 4.57338 4.64431 4.67569 4.73657 4.77136 4.82355 4.87909 4.89236 4.92351 4.93704 5.04105 5.07727 5.15689 5.23791 5.26541 5.29904 5.32619 5.43776 5.50934 5.52872 5.73296 5.91497 6.09892 6.45023 6.60042 6.61089 6.88016 7.32687 7.39848 7.96719 8.76251 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.001504 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.733537 B =18610.109971 C =19330.379117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 H 0.060 0.940 4 C -0.129 4.129 5 C 0.510 3.490 6 O -0.580 6.580 7 N -0.705 5.705 8 C 0.115 3.885 9 H 0.084 0.916 10 C -0.141 4.141 11 C -0.100 4.100 12 H 0.091 0.909 13 C 0.071 3.929 14 N -0.688 5.688 15 C 0.062 3.938 16 C 0.447 3.553 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.331 4.331 20 H 0.054 0.946 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.230 1.230 27 C -0.119 4.119 28 C -0.149 4.149 29 C -0.178 4.178 30 C -0.185 4.185 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.414 0.586 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.343 0.657 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.116 0.884 49 H 0.090 0.910 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.681 18.381 -21.214 33.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 H 0.078 0.922 4 C -0.169 4.169 5 C 0.298 3.702 6 O -0.460 6.460 7 N -0.356 5.356 8 C 0.009 3.991 9 H 0.102 0.898 10 C -0.180 4.180 11 C -0.119 4.119 12 H 0.109 0.891 13 C -0.058 4.058 14 N -0.321 5.321 15 C -0.070 4.070 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.233 5.233 19 C -0.460 4.460 20 H 0.072 0.928 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.153 1.153 27 C -0.158 4.158 28 C -0.168 4.168 29 C -0.215 4.215 30 C -0.221 4.221 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.251 0.749 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.162 0.838 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.125 0.875 48 H 0.134 0.866 49 H 0.108 0.892 50 H 0.123 0.877 51 H 0.120 0.880 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.324 18.814 -21.922 33.685 hybrid contribution 0.411 -0.756 1.314 1.571 sum 17.735 18.058 -20.608 32.639 Atomic orbital electron populations 1.21881 0.95480 1.01569 1.01655 1.20370 0.95456 0.98311 0.91795 0.92163 1.21757 1.04512 1.00242 0.90350 1.21270 0.78029 0.85262 0.85622 1.90662 1.41441 1.26671 1.87185 1.45688 1.57261 1.27831 1.04824 1.21823 0.96515 0.95998 0.84741 0.89750 1.23392 0.96736 0.99414 0.98470 1.22521 0.96638 0.98417 0.94334 0.89119 1.22068 0.95514 0.92409 0.95765 1.60049 1.52295 1.06753 1.13006 1.21622 0.99092 0.95221 0.91063 1.21065 0.84167 0.88941 0.82315 1.90540 1.60249 1.56186 1.43021 1.42038 1.49565 1.23808 1.07879 1.19015 1.30180 1.01979 0.94833 0.92790 1.26122 0.96096 0.98122 1.00966 1.69810 1.37767 1.26132 1.23823 0.85353 0.80513 0.78526 0.77040 1.18258 1.19979 1.15321 1.23261 0.98147 0.98424 0.95924 1.22333 1.03925 0.99605 0.90893 1.23095 0.92565 1.02045 1.03832 1.22991 0.98333 1.03409 0.97417 0.93276 0.92823 0.92604 0.87099 0.86327 0.74921 0.89459 0.93377 0.93484 0.90331 0.83826 0.90521 0.87080 0.77442 0.91142 0.89237 0.87474 0.86556 0.89168 0.87749 0.88045 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.78 71.98 0.63 -1.98 16 2 C -0.04 -0.57 2.19 -10.79 -0.02 -0.60 16 3 H 0.06 1.07 7.71 -2.39 -0.02 1.05 16 4 C -0.13 -1.45 5.16 29.85 0.15 -1.30 16 5 C 0.51 9.15 7.55 87.66 0.66 9.81 16 6 O -0.58 -15.44 13.57 -3.02 -0.04 -15.48 16 7 N -0.70 -9.96 5.26 -440.04 -2.32 -12.28 16 8 C 0.12 1.85 4.32 45.52 0.20 2.05 16 9 H 0.08 1.67 7.46 -2.39 -0.02 1.65 16 10 C -0.14 -2.73 7.43 31.12 0.23 -2.50 16 11 C -0.10 -1.58 3.78 -10.27 -0.04 -1.62 16 12 H 0.09 1.44 8.13 -2.39 -0.02 1.42 16 13 C 0.07 1.30 5.52 86.31 0.48 1.78 16 14 N -0.69 -19.28 6.13 -517.94 -3.17 -22.45 16 15 C 0.06 1.85 6.17 85.56 0.53 2.38 16 16 C 0.45 20.13 7.82 87.66 0.69 20.82 16 17 O -0.62 -34.26 15.78 -3.07 -0.05 -34.31 16 18 N -0.59 -27.84 5.09 -306.99 -1.56 -29.41 16 19 C -0.33 -19.48 10.16 84.04 0.85 -18.62 16 20 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 21 C -0.01 -0.80 5.50 84.92 0.47 -0.34 16 22 N -0.93 -56.47 13.96 21.66 0.30 -56.17 16 23 Si 0.97 38.57 27.74 68.60 1.90 40.47 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 27 C -0.12 -1.32 7.39 31.12 0.23 -1.09 16 28 C -0.15 -1.61 5.15 -10.79 -0.06 -1.67 16 29 C -0.18 -1.77 10.18 30.62 0.31 -1.46 16 30 C -0.18 -2.03 9.74 30.62 0.30 -1.73 16 31 H 0.05 1.14 5.95 -2.39 -0.01 1.12 16 32 H 0.05 0.89 7.29 -2.38 -0.02 0.88 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.41 3.60 8.70 -92.70 -0.81 2.80 16 37 H 0.09 1.72 7.90 -2.39 -0.02 1.70 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.08 1.38 7.84 -2.38 -0.02 1.36 16 41 H 0.34 10.23 8.42 -89.69 -0.76 9.47 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.39 15.08 5.76 -92.71 -0.53 14.55 16 45 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 46 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.11 0.99 8.10 -2.39 -0.02 0.97 16 48 H 0.12 1.00 8.11 -2.39 -0.02 0.98 16 49 H 0.09 0.95 8.05 -2.39 -0.02 0.93 16 50 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 51 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.09 1.08 7.61 -2.39 -0.02 1.06 16 Total: -1.00 -81.71 419.24 -0.55 -82.26 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -1.22 Total: 43.41 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.61 Total: 3.94 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -6.75 Total: -120.30 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -0.09 Total: -49.79 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -81.71 -0.55 -82.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571197950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.991 kcal (2) G-P(sol) polarization free energy of solvation -81.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds