Wall clock time and date at job start Tue Mar 31 2020 20:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46850 * 2 1 4 4 C 1.50699 * 109.46891 * 119.99555 * 2 1 3 5 5 O 1.21278 * 120.00118 * 120.00155 * 4 2 1 6 6 N 1.34780 * 119.99845 * 299.99710 * 4 2 1 7 7 C 1.46502 * 119.99864 * 179.97438 * 6 4 2 8 8 C 1.50706 * 109.47067 * 180.02562 * 7 6 4 9 9 C 1.30999 * 119.99914 * 125.00278 * 8 7 6 10 10 C 1.50697 * 119.99767 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47066 * 124.99987 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 O 1.21292 * 120.00024 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00095 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99386 * 359.97438 * 16 15 13 18 18 C 1.38941 * 120.00393 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99786 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47134 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47103 * 119.99873 * 20 18 16 23 23 H 1.48494 * 109.47266 * 240.00292 * 20 18 16 24 24 C 1.52993 * 109.47287 * 239.99580 * 2 1 3 25 25 C 1.54266 * 110.03256 * 177.16711 * 24 2 1 26 26 C 1.54889 * 104.19726 * 217.10197 * 25 24 2 27 27 C 1.54889 * 102.74710 * 37.94449 * 26 25 24 28 28 C 1.53873 * 110.03441 * 60.00174 * 24 2 1 29 29 H 1.08996 * 109.46850 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47172 * 300.00541 * 1 2 3 31 31 H 1.08997 * 109.46845 * 60.00478 * 1 2 3 32 32 H 0.97003 * 120.00125 * 0.02562 * 6 4 2 33 33 H 1.09001 * 109.47308 * 60.00406 * 7 6 4 34 34 H 1.08997 * 109.47306 * 300.00392 * 7 6 4 35 35 H 1.08001 * 119.99801 * 305.00350 * 8 7 6 36 36 H 1.08002 * 119.99759 * 0.02562 * 9 8 7 37 37 H 1.09001 * 109.47558 * 5.00150 * 10 9 8 38 38 H 1.08998 * 109.47216 * 244.99813 * 10 9 8 39 39 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 40 40 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 41 41 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 42 42 H 0.96997 * 120.00713 * 359.97438 * 15 13 12 43 43 H 0.97001 * 119.99428 * 179.97438 * 19 18 16 44 44 H 1.09001 * 110.02002 * 298.60997 * 24 2 1 45 45 H 1.08999 * 110.48761 * 335.78340 * 25 24 2 46 46 H 1.09003 * 110.48974 * 98.42480 * 25 24 2 47 47 H 1.08999 * 110.75789 * 279.62816 * 26 25 24 48 48 H 1.08999 * 110.91506 * 156.32714 * 26 25 24 49 49 H 1.09004 * 110.48788 * 203.38165 * 27 26 25 50 50 H 1.08997 * 110.60368 * 80.78873 * 27 26 25 51 51 H 1.09007 * 110.03332 * 238.56937 * 28 24 2 52 52 H 1.08998 * 110.03426 * 359.94759 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 2.1945 -0.9405 3.6509 8 6 1.6918 -0.2302 4.8813 9 6 1.0210 -0.8919 5.7914 10 6 0.5188 -0.1818 7.0220 11 7 -0.9305 -0.3860 7.1481 12 6 -1.4563 0.2942 8.3392 13 6 -2.9422 0.0621 8.4352 14 8 -3.5076 -0.6040 7.5939 15 7 -3.6430 0.5956 9.4554 16 6 -4.9950 0.3849 9.5425 17 1 -5.4984 -0.2082 8.7933 18 6 -5.7174 0.9344 10.5945 19 7 -5.1049 1.6565 11.5057 20 14 -7.5595 0.6480 10.7128 21 1 -8.0041 -0.1918 9.5716 22 1 -7.8717 -0.0456 11.9882 23 1 -8.2670 1.9529 10.6728 24 6 2.0401 -0.7213 -1.2491 25 6 3.5810 -0.6671 -1.2985 26 6 3.9070 -0.4941 -2.8028 27 6 2.7856 0.4577 -3.2882 28 6 1.5344 -0.0061 -2.5142 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1488 0.5388 2.5435 33 1 3.2845 -0.9410 3.6511 34 1 1.8308 -1.9680 3.6508 35 1 1.8845 0.8243 5.0126 36 1 0.8287 -1.9465 5.6602 37 1 0.7295 0.8844 6.9378 38 1 1.0202 -0.5826 7.9029 39 1 -1.1571 -1.3691 7.1631 40 1 -0.9687 -0.1030 9.2295 41 1 -1.2594 1.3635 8.2636 42 1 -3.1910 1.1286 10.1280 43 1 -5.6093 2.0404 12.2399 44 1 1.7021 -1.7576 -1.2458 45 1 3.9513 0.1843 -0.7275 46 1 4.0078 -1.5960 -0.9201 47 1 3.8534 -1.4508 -3.3222 48 1 4.8872 -0.0369 -2.9384 49 1 2.6318 0.3496 -4.3619 50 1 3.0260 1.4915 -3.0404 51 1 0.9516 -0.6956 -3.1252 52 1 0.9248 0.8543 -2.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649451873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:47 Heat of formation + Delta-G solvation = -82.905650 kcal Electronic energy + Delta-G solvation = -27712.952928 eV Core-core repulsion = 23711.425752 eV Total energy + Delta-G solvation = -4001.527177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48462 -38.38585 -38.23180 -36.70276 -35.21131 -33.99202 -33.77783 -32.59485 -31.22885 -29.08042 -28.67313 -27.75649 -26.21054 -24.63615 -23.80847 -22.50511 -20.92026 -20.86342 -20.13964 -19.53593 -19.12326 -17.89968 -17.63056 -16.51114 -16.23038 -15.82638 -15.61966 -15.46588 -15.23072 -14.79214 -14.46584 -14.31100 -13.98924 -13.74595 -13.65401 -13.59232 -13.53286 -13.43243 -13.02625 -12.59773 -12.52780 -12.27262 -11.80689 -11.79799 -11.59940 -11.52798 -11.48445 -11.32359 -11.25129 -11.19286 -11.07490 -10.95976 -10.86274 -10.69930 -10.35711 -10.24424 -10.01466 -9.54794 -9.52809 -9.17059 -8.49205 -8.08124 -7.97892 -6.43724 -3.84585 1.83425 2.45506 3.12828 3.15053 3.25810 3.33145 3.88528 4.10381 4.17581 4.27374 4.32552 4.34780 4.58583 4.67363 4.74574 4.78924 4.84986 5.02648 5.10164 5.14180 5.22193 5.26564 5.28024 5.30070 5.32233 5.35901 5.39874 5.44229 5.45485 5.49298 5.57728 5.62083 5.66416 5.69838 5.76926 5.79372 5.86065 5.93670 6.00016 6.02883 6.16587 6.18507 6.23193 6.42147 6.58048 7.14443 7.28689 7.53701 7.59756 8.02189 8.04566 8.59119 9.16060 9.52164 10.03461 10.74065 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019720 B = 0.001438 C = 0.001364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.530330 B =19473.268557 C =20522.730821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 H 0.096 0.904 4 C 0.516 3.484 5 O -0.539 6.539 6 N -0.726 5.726 7 C 0.153 3.847 8 C -0.184 4.184 9 C -0.111 4.111 10 C 0.082 3.918 11 N -0.665 5.665 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.583 6.583 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.072 4.072 25 C -0.112 4.112 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.403 0.597 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.064 0.936 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.911 0.174 -22.104 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.114 0.886 4 C 0.302 3.698 5 O -0.415 6.415 6 N -0.378 5.378 7 C 0.030 3.970 8 C -0.203 4.203 9 C -0.130 4.130 10 C -0.047 4.047 11 N -0.298 5.298 12 C -0.083 4.083 13 C 0.226 3.774 14 O -0.467 6.467 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.090 4.090 25 C -0.150 4.150 26 C -0.166 4.166 27 C -0.163 4.163 28 C -0.161 4.161 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.170 0.830 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.782 -0.390 -22.985 29.685 hybrid contribution -0.598 0.161 1.536 1.656 sum 18.184 -0.230 -21.449 28.121 Atomic orbital electron populations 1.21870 0.92699 1.03099 1.02955 1.21480 0.97580 1.00589 0.92906 0.88590 1.20689 0.79899 0.84622 0.84547 1.90683 1.37816 1.26257 1.86791 1.46065 1.53904 1.32446 1.05425 1.20284 0.98958 0.95731 0.82010 1.22741 1.01967 1.00212 0.95374 1.22876 0.94808 0.99849 0.95485 1.21087 0.88717 1.00111 0.94769 1.60121 1.10056 1.18962 1.40637 1.21691 0.95136 1.00156 0.91270 1.19795 0.87999 0.85343 0.84296 1.90527 1.71033 1.43480 1.41671 1.41868 1.08559 1.46298 1.23294 1.19764 0.82823 1.30620 1.09699 0.87849 1.25262 1.00649 0.96486 0.95531 1.69624 1.36911 1.34243 1.13526 0.85796 0.82107 0.78131 0.78292 1.19207 1.20765 1.20728 1.21578 0.95840 0.99588 0.92037 1.22376 0.94748 1.02325 0.95507 1.22534 0.98204 0.99427 0.96395 1.22363 0.95192 0.99269 0.99461 1.22290 0.97692 1.00184 0.95901 0.91918 0.91864 0.91066 0.76266 0.91002 0.91206 0.86606 0.86972 0.90511 0.94305 0.83031 0.93787 0.89549 0.77455 0.91918 0.90357 0.92256 0.90685 0.91642 0.91854 0.91921 0.91784 0.91694 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.83 37.16 0.33 -0.65 16 2 C -0.10 -0.77 2.02 -91.77 -0.19 -0.95 16 3 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 4 C 0.52 5.17 6.90 -10.98 -0.08 5.09 16 5 O -0.54 -7.23 14.54 5.56 0.08 -7.15 16 6 N -0.73 -6.33 5.44 -61.47 -0.33 -6.66 16 7 C 0.15 1.42 6.11 -5.19 -0.03 1.38 16 8 C -0.18 -1.63 9.24 -36.02 -0.33 -1.96 16 9 C -0.11 -1.13 9.38 -36.03 -0.34 -1.47 16 10 C 0.08 0.95 6.12 -4.97 -0.03 0.92 16 11 N -0.67 -10.47 6.11 -116.34 -0.71 -11.18 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 14 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 15 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 16 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 17 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 20 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.07 -0.56 2.11 -89.51 -0.19 -0.75 16 25 C -0.11 -0.93 5.18 -25.07 -0.13 -1.06 16 26 C -0.13 -0.86 6.91 -24.74 -0.17 -1.03 16 27 C -0.13 -0.74 6.83 -25.07 -0.17 -0.91 16 28 C -0.12 -0.76 5.91 -25.61 -0.15 -0.91 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 31 H 0.07 0.38 6.47 -51.93 -0.34 0.04 16 32 H 0.40 2.79 7.88 -40.82 -0.32 2.47 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 35 H 0.12 0.92 7.84 -52.49 -0.41 0.51 16 36 H 0.11 1.12 7.84 -52.49 -0.41 0.71 16 37 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.35 5.71 8.42 -39.29 -0.33 5.38 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 45 H 0.06 0.49 7.84 -51.93 -0.41 0.09 16 46 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.07 0.37 6.33 -51.93 -0.33 0.04 16 LS Contribution 420.01 15.07 6.33 6.33 Total: -1.00 -32.68 420.01 -9.78 -42.46 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -9.04 Total: 13.11 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.84 Total: 0.80 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.38 Total: -55.73 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.68 -9.78 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649451873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.448 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds