Wall clock time and date at job start Tue Mar 31 2020 20:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47354 * 2 1 4 4 C 1.50707 * 109.46864 * 240.00502 * 2 1 3 5 5 O 1.21280 * 119.99494 * 239.99579 * 4 2 1 6 6 N 1.34777 * 119.99997 * 59.99843 * 4 2 1 7 7 C 1.46501 * 119.99465 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46848 * 173.90388 * 7 6 4 9 9 H 1.09002 * 110.33415 * 56.32539 * 8 7 6 10 10 C 1.54900 * 110.37610 * 178.58047 * 8 7 6 11 11 C 1.55432 * 101.52377 * 155.94854 * 10 8 7 12 12 C 1.54313 * 103.04580 * 324.36778 * 11 10 8 13 13 N 1.47444 * 107.23760 * 22.27938 * 12 11 10 14 14 C 1.46900 * 110.99850 * 123.25465 * 13 12 11 15 15 C 1.50700 * 109.46731 * 75.00960 * 14 13 12 16 16 O 1.21293 * 120.00353 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00027 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00056 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00183 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99694 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00668 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47252 * 59.99546 * 22 20 18 24 24 H 1.48491 * 109.47346 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46933 * 300.00070 * 22 20 18 26 26 C 1.52992 * 109.47532 * 120.00489 * 2 1 3 27 27 C 1.53780 * 113.61388 * 279.13579 * 26 2 1 28 28 C 1.53954 * 87.02068 * 220.04758 * 27 26 2 29 29 C 1.53781 * 87.11115 * 25.36162 * 28 27 26 30 30 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46753 * 299.99521 * 1 2 3 32 32 H 1.08999 * 109.46904 * 59.99570 * 1 2 3 33 33 H 0.96992 * 120.00090 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.46934 * 53.90991 * 7 6 4 35 35 H 1.08991 * 109.47359 * 293.90512 * 7 6 4 36 36 H 1.08998 * 110.98986 * 274.10454 * 10 8 7 37 37 H 1.09004 * 110.99366 * 37.91591 * 10 8 7 38 38 H 1.08996 * 110.69418 * 205.97103 * 11 10 8 39 39 H 1.09005 * 110.83757 * 82.82780 * 11 10 8 40 40 H 1.09007 * 109.88580 * 262.87606 * 12 11 10 41 41 H 1.09003 * 110.02549 * 141.76438 * 12 11 10 42 42 H 1.09000 * 109.47085 * 195.00461 * 14 13 12 43 43 H 1.08998 * 109.47305 * 315.00462 * 14 13 12 44 44 H 0.97001 * 119.99840 * 359.97438 * 17 15 14 45 45 H 0.96998 * 120.00746 * 180.02562 * 21 20 18 46 46 H 1.08996 * 112.85414 * 50.32557 * 26 2 1 47 47 H 1.09003 * 113.61724 * 334.56727 * 27 26 2 48 48 H 1.08998 * 113.61627 * 105.46703 * 27 26 2 49 49 H 1.08996 * 113.53301 * 270.80616 * 28 27 26 50 50 H 1.09003 * 113.74399 * 139.94522 * 28 27 26 51 51 H 1.09001 * 113.61133 * 220.08839 * 29 28 27 52 52 H 1.08997 * 113.68859 * 89.19988 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4547 7 6 2.1954 -0.9401 -3.6508 8 6 1.5641 -0.3128 -4.8954 9 1 1.7724 0.7567 -4.9276 10 6 2.0944 -1.0043 -6.1760 11 6 0.9468 -0.7143 -7.1834 12 6 -0.3177 -0.7901 -6.3021 13 7 0.1054 -0.5538 -4.9096 14 6 -0.6213 0.5806 -4.3239 15 6 -2.0308 0.1592 -3.9969 16 8 -2.3943 -0.9744 -4.2293 17 7 -2.8875 1.0420 -3.4462 18 6 -4.1698 0.6588 -3.1492 19 1 -4.4937 -0.3502 -3.3569 20 6 -5.0528 1.5688 -2.5809 21 7 -4.6586 2.7965 -2.3276 22 14 -6.7999 1.0466 -2.1755 23 1 -6.7682 -0.0767 -1.2047 24 1 -7.5340 2.1927 -1.5817 25 1 -7.4863 0.6083 -3.4173 26 6 2.0401 -0.7213 1.2491 27 6 2.0345 0.1557 2.5123 28 6 3.3857 -0.4901 2.8692 29 6 3.5734 -0.7444 1.3642 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.1493 0.5390 -2.5436 34 1 1.9242 -1.9945 -3.5981 35 1 3.2798 -0.8461 -3.7069 36 1 3.0296 -0.5516 -6.5054 37 1 2.2152 -2.0762 -6.0195 38 1 0.9185 -1.4742 -7.9642 39 1 1.0545 0.2794 -7.6183 40 1 -0.7718 -1.7772 -6.3893 41 1 -1.0319 -0.0253 -6.6076 42 1 -0.1178 0.9031 -3.4126 43 1 -0.6445 1.4045 -5.0372 44 1 -2.5967 1.9485 -3.2599 45 1 -5.2749 3.4317 -1.9306 46 1 1.5767 -1.6973 1.3932 47 1 2.1026 1.2233 2.3030 48 1 1.2343 -0.0895 3.2106 49 1 3.2901 -1.4026 3.4576 50 1 4.1096 0.2093 3.2875 51 1 4.0138 -1.7152 1.1370 52 1 4.0631 0.0758 0.8392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:21 Heat of formation + Delta-G solvation = -55.376487 kcal Electronic energy + Delta-G solvation = -30730.726400 eV Core-core repulsion = 26730.392977 eV Total energy + Delta-G solvation = -4000.333423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.30408 -39.40762 -38.10058 -37.55575 -34.51296 -33.93352 -32.94178 -31.99866 -31.14575 -29.79924 -26.81048 -26.02538 -25.40604 -25.18887 -24.16431 -22.60797 -21.33151 -20.38496 -19.76852 -19.39875 -19.11749 -17.88598 -17.14274 -16.35163 -16.05848 -15.75189 -15.43953 -15.08126 -15.04020 -14.60875 -14.50006 -14.06657 -13.93396 -13.82920 -13.54929 -12.99642 -12.74066 -12.57191 -12.51812 -12.43519 -12.20264 -12.08697 -11.96231 -11.72649 -11.64756 -11.42685 -11.29715 -11.21844 -11.14952 -11.04265 -10.97420 -10.58273 -10.55756 -10.45484 -10.38144 -10.22568 -10.07901 -9.50188 -9.41792 -8.88419 -8.49250 -7.98189 -7.93103 -6.42984 -3.83524 2.84181 3.18650 3.24805 3.29131 3.29693 3.86489 3.90470 4.20694 4.49795 4.56789 4.61281 4.62977 4.69525 4.84638 4.91508 5.01757 5.10042 5.16017 5.19019 5.20829 5.25301 5.35944 5.41648 5.49022 5.55178 5.63540 5.67457 5.70300 5.74612 5.76354 5.80692 5.83816 5.84562 5.92945 5.94495 6.01895 6.03661 6.13154 6.17807 6.25756 6.28157 6.36932 6.41967 6.51059 6.59256 7.19097 7.21522 7.53876 7.63068 8.04726 8.40253 8.60780 9.17546 9.52743 10.05337 10.74631 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007399 B = 0.004139 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3783.473539 B = 6763.830683 C =10064.293874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.093 0.907 4 C 0.520 3.480 5 O -0.542 6.542 6 N -0.725 5.725 7 C 0.137 3.863 8 C 0.055 3.945 9 H 0.058 0.942 10 C -0.117 4.117 11 C -0.143 4.143 12 C 0.055 3.945 13 N -0.497 5.497 14 C 0.042 3.958 15 C 0.444 3.556 16 O -0.571 6.571 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.101 0.899 20 C 0.024 3.976 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.086 4.086 27 C -0.136 4.136 28 C -0.146 4.146 29 C -0.123 4.123 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.396 0.604 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.390 0.610 45 H 0.271 0.729 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.317 0.052 0.867 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.111 0.889 4 C 0.306 3.694 5 O -0.419 6.419 6 N -0.379 5.379 7 C 0.013 3.987 8 C -0.054 4.054 9 H 0.076 0.924 10 C -0.156 4.156 11 C -0.182 4.182 12 C -0.072 4.072 13 N -0.222 5.222 14 C -0.090 4.090 15 C 0.229 3.771 16 O -0.454 6.454 17 N -0.203 5.203 18 C -0.427 4.427 19 H 0.119 0.881 20 C -0.177 4.177 21 N -0.544 5.544 22 Si 0.755 3.245 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 C -0.105 4.105 27 C -0.174 4.174 28 C -0.183 4.183 29 C -0.161 4.161 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.223 0.777 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.330 -1.706 1.172 16.460 hybrid contribution -0.996 1.644 -0.226 1.936 sum 15.334 -0.061 0.946 15.363 Atomic orbital electron populations 1.21735 0.91959 1.03243 1.03031 1.21385 0.98028 1.00077 0.92817 0.88924 1.20631 0.79715 0.84515 0.84515 1.90653 1.38165 1.26190 1.86883 1.46182 1.53780 1.32157 1.05776 1.21326 0.96890 0.97937 0.82521 1.22860 0.89152 0.98394 0.94966 0.92417 1.22668 0.97869 1.01567 0.93475 1.22887 0.95296 1.01731 0.98241 1.22740 0.95664 1.03005 0.85803 1.63142 1.01447 1.38722 1.18874 1.22180 0.95597 0.92060 0.99202 1.19678 0.86231 0.86724 0.84467 1.90536 1.77834 1.19858 1.57126 1.41841 1.11123 1.12552 1.54816 1.19618 0.86514 0.98869 1.37689 0.88075 1.25207 1.00218 0.95028 0.97288 1.69588 1.36925 1.04003 1.43900 0.85963 0.81737 0.77891 0.78920 1.19903 1.20992 1.19967 1.22320 0.96621 0.99144 0.92430 1.23009 0.97659 0.99320 0.97380 1.22878 0.97555 1.00729 0.97184 1.22788 0.95980 1.02216 0.95084 0.91889 0.91349 0.91865 0.76641 0.90350 0.91768 0.90732 0.90139 0.90701 0.91692 0.89918 0.92707 0.90561 0.93088 0.77684 0.91877 0.88897 0.90150 0.91451 0.90433 0.91805 0.91052 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.07 37.16 0.34 -1.57 16 2 C -0.10 -1.24 2.46 -91.77 -0.23 -1.47 16 3 H 0.09 0.97 7.98 -51.93 -0.41 0.55 16 4 C 0.52 7.55 6.97 -10.98 -0.08 7.48 16 5 O -0.54 -9.38 14.94 5.56 0.08 -9.30 16 6 N -0.73 -9.68 5.28 -60.29 -0.32 -10.00 16 7 C 0.14 1.77 5.37 -4.04 -0.02 1.75 16 8 C 0.06 0.66 2.60 -66.18 -0.17 0.49 16 9 H 0.06 0.63 7.81 -51.93 -0.41 0.22 16 10 C -0.12 -1.18 6.52 -24.44 -0.16 -1.34 16 11 C -0.14 -1.54 6.95 -24.75 -0.17 -1.71 16 12 C 0.06 0.83 5.95 -2.84 -0.02 0.81 16 13 N -0.50 -7.79 4.39 -224.81 -0.99 -8.78 16 14 C 0.04 0.70 4.96 -4.98 -0.02 0.67 16 15 C 0.44 10.06 7.58 -10.98 -0.08 9.98 16 16 O -0.57 -15.16 15.39 5.55 0.09 -15.08 16 17 N -0.57 -13.72 5.29 -10.97 -0.06 -13.78 16 18 C -0.30 -8.07 9.68 -14.94 -0.14 -8.21 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 22 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.09 -1.02 2.68 -89.81 -0.24 -1.26 16 27 C -0.14 -1.34 7.63 -25.83 -0.20 -1.53 16 28 C -0.15 -1.38 8.09 -25.83 -0.21 -1.59 16 29 C -0.12 -1.39 6.29 -25.92 -0.16 -1.56 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.91 7.56 -51.93 -0.39 0.51 16 33 H 0.40 4.93 5.02 -40.82 -0.20 4.72 16 34 H 0.08 1.20 8.12 -51.93 -0.42 0.77 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 41 H 0.05 0.87 7.36 -51.93 -0.38 0.49 16 42 H 0.08 1.12 5.08 -51.93 -0.26 0.86 16 43 H 0.05 0.78 7.80 -51.93 -0.40 0.37 16 44 H 0.39 9.00 7.90 -40.82 -0.32 8.67 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.08 0.73 7.99 -51.93 -0.41 0.32 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.90 8.00 -51.93 -0.42 0.49 16 52 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 409.30 15.07 6.17 6.17 Total: -1.00 -31.74 409.30 -10.03 -41.78 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -9.04 Total: 14.86 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.67 Total: 1.47 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.64 Total: -55.62 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.17 Total: -24.38 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.74 -10.03 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.600 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds