Wall clock time and date at job start Tue Mar 31 2020 20:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47354 * 2 1 4 4 C 1.50707 * 109.46864 * 240.00502 * 2 1 3 5 5 O 1.21280 * 119.99494 * 239.99579 * 4 2 1 6 6 N 1.34777 * 119.99997 * 59.99843 * 4 2 1 7 7 C 1.46501 * 119.99465 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46848 * 173.90388 * 7 6 4 9 9 H 1.09002 * 110.33415 * 56.32539 * 8 7 6 10 10 C 1.54900 * 110.37610 * 178.58047 * 8 7 6 11 11 C 1.55432 * 101.52377 * 155.94854 * 10 8 7 12 12 C 1.54313 * 103.04580 * 324.36778 * 11 10 8 13 13 N 1.47444 * 107.23760 * 22.27938 * 12 11 10 14 14 C 1.46900 * 110.99850 * 123.25465 * 13 12 11 15 15 C 1.50700 * 109.46731 * 75.00960 * 14 13 12 16 16 O 1.21293 * 120.00353 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00027 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00056 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00183 * 359.97438 * 18 17 15 20 20 C 1.38946 * 119.99694 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00668 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00011 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47252 * 59.99546 * 22 20 18 24 24 H 1.48491 * 109.47346 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46933 * 300.00070 * 22 20 18 26 26 C 1.52992 * 109.47532 * 120.00489 * 2 1 3 27 27 C 1.53780 * 113.61388 * 279.13579 * 26 2 1 28 28 C 1.53954 * 87.02068 * 220.04758 * 27 26 2 29 29 C 1.53781 * 87.11115 * 25.36162 * 28 27 26 30 30 H 1.09001 * 109.46887 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46753 * 299.99521 * 1 2 3 32 32 H 1.08999 * 109.46904 * 59.99570 * 1 2 3 33 33 H 0.96992 * 120.00090 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.46934 * 53.90991 * 7 6 4 35 35 H 1.08991 * 109.47359 * 293.90512 * 7 6 4 36 36 H 1.08998 * 110.98986 * 274.10454 * 10 8 7 37 37 H 1.09004 * 110.99366 * 37.91591 * 10 8 7 38 38 H 1.08996 * 110.69418 * 205.97103 * 11 10 8 39 39 H 1.09005 * 110.83757 * 82.82780 * 11 10 8 40 40 H 1.09007 * 109.88580 * 262.87606 * 12 11 10 41 41 H 1.09003 * 110.02549 * 141.76438 * 12 11 10 42 42 H 1.09000 * 109.47085 * 195.00461 * 14 13 12 43 43 H 1.08998 * 109.47305 * 315.00462 * 14 13 12 44 44 H 0.97001 * 119.99840 * 359.97438 * 17 15 14 45 45 H 0.96998 * 120.00746 * 180.02562 * 21 20 18 46 46 H 1.08996 * 112.85414 * 50.32557 * 26 2 1 47 47 H 1.09003 * 113.61724 * 334.56727 * 27 26 2 48 48 H 1.08998 * 113.61627 * 105.46703 * 27 26 2 49 49 H 1.08996 * 113.53301 * 270.80616 * 28 27 26 50 50 H 1.09003 * 113.74399 * 139.94522 * 28 27 26 51 51 H 1.09001 * 113.61133 * 220.08839 * 29 28 27 52 52 H 1.08997 * 113.68859 * 89.19988 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7066 -0.2498 -2.4547 7 6 2.1954 -0.9401 -3.6508 8 6 1.5641 -0.3128 -4.8954 9 1 1.7724 0.7567 -4.9276 10 6 2.0944 -1.0043 -6.1760 11 6 0.9468 -0.7143 -7.1834 12 6 -0.3177 -0.7901 -6.3021 13 7 0.1054 -0.5538 -4.9096 14 6 -0.6213 0.5806 -4.3239 15 6 -2.0308 0.1592 -3.9969 16 8 -2.3943 -0.9744 -4.2293 17 7 -2.8875 1.0420 -3.4462 18 6 -4.1698 0.6588 -3.1492 19 1 -4.4937 -0.3502 -3.3569 20 6 -5.0528 1.5688 -2.5809 21 7 -4.6586 2.7965 -2.3276 22 14 -6.7999 1.0466 -2.1755 23 1 -6.7682 -0.0767 -1.2047 24 1 -7.5340 2.1927 -1.5817 25 1 -7.4863 0.6083 -3.4173 26 6 2.0401 -0.7213 1.2491 27 6 2.0345 0.1557 2.5123 28 6 3.3857 -0.4901 2.8692 29 6 3.5734 -0.7444 1.3642 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.1493 0.5390 -2.5436 34 1 1.9242 -1.9945 -3.5981 35 1 3.2798 -0.8461 -3.7069 36 1 3.0296 -0.5516 -6.5054 37 1 2.2152 -2.0762 -6.0195 38 1 0.9185 -1.4742 -7.9642 39 1 1.0545 0.2794 -7.6183 40 1 -0.7718 -1.7772 -6.3893 41 1 -1.0319 -0.0253 -6.6076 42 1 -0.1178 0.9031 -3.4126 43 1 -0.6445 1.4045 -5.0372 44 1 -2.5967 1.9485 -3.2599 45 1 -5.2749 3.4317 -1.9306 46 1 1.5767 -1.6973 1.3932 47 1 2.1026 1.2233 2.3030 48 1 1.2343 -0.0895 3.2106 49 1 3.2901 -1.4026 3.4576 50 1 4.1096 0.2093 3.2875 51 1 4.0138 -1.7152 1.1370 52 1 4.0631 0.0758 0.8392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:20 Heat of formation + Delta-G solvation = -76.908697 kcal Electronic energy + Delta-G solvation = -30731.660107 eV Core-core repulsion = 26730.392977 eV Total energy + Delta-G solvation = -4001.267129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40585 -40.64959 -39.42375 -38.88760 -35.94632 -35.62697 -33.98087 -33.42225 -32.91716 -30.84545 -28.31836 -26.99159 -26.51399 -26.19244 -25.76241 -23.66834 -22.33819 -21.52487 -20.97269 -20.68002 -20.28525 -19.83962 -18.20944 -17.64537 -17.45967 -17.01459 -16.53620 -16.47553 -16.21662 -16.05869 -15.61492 -15.53915 -15.50430 -14.97962 -14.76625 -14.40137 -13.90402 -13.77701 -13.58750 -13.55833 -13.46393 -13.27115 -13.13819 -13.05512 -12.92974 -12.76432 -12.55112 -12.41138 -12.33473 -12.19176 -12.14029 -12.12197 -12.00571 -11.55565 -11.47161 -11.42358 -11.28486 -10.97082 -10.53480 -10.31864 -10.00597 -9.97311 -9.21139 -8.44080 -5.91665 1.39227 1.41901 1.51488 1.68748 2.06481 2.26169 2.28901 2.73257 3.21834 3.33789 3.53943 3.69553 3.72614 3.74627 3.76092 3.93656 4.03169 4.08737 4.13229 4.21882 4.27923 4.30457 4.36208 4.39477 4.42570 4.50828 4.59315 4.68986 4.76919 4.83103 4.84844 4.89445 4.92766 4.92983 4.99364 5.03300 5.09694 5.12780 5.18218 5.20562 5.27567 5.36822 5.42600 5.43197 5.50526 5.64307 5.90623 6.05221 6.14895 6.53362 6.64378 7.16760 7.27794 7.59761 8.17060 8.72692 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007399 B = 0.004139 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3783.473539 B = 6763.830683 C =10064.293874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.120 0.880 4 C 0.513 3.487 5 O -0.575 6.575 6 N -0.721 5.721 7 C 0.139 3.861 8 C 0.059 3.941 9 H 0.083 0.917 10 C -0.110 4.110 11 C -0.130 4.130 12 C 0.053 3.947 13 N -0.524 5.524 14 C 0.056 3.944 15 C 0.442 3.558 16 O -0.616 6.616 17 N -0.572 5.572 18 C -0.330 4.330 19 H 0.073 0.927 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.984 3.016 23 H -0.275 1.275 24 H -0.269 1.269 25 H -0.275 1.275 26 C -0.096 4.096 27 C -0.128 4.128 28 C -0.138 4.138 29 C -0.124 4.124 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.401 0.599 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.050 0.950 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.810 2.174 0.942 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.138 0.862 4 C 0.301 3.699 5 O -0.454 6.454 6 N -0.374 5.374 7 C 0.015 3.985 8 C -0.049 4.049 9 H 0.101 0.899 10 C -0.148 4.148 11 C -0.168 4.168 12 C -0.075 4.075 13 N -0.249 5.249 14 C -0.076 4.076 15 C 0.229 3.771 16 O -0.501 6.501 17 N -0.210 5.210 18 C -0.460 4.460 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.557 5.557 22 Si 0.808 3.192 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.115 4.115 27 C -0.165 4.165 28 C -0.175 4.175 29 C -0.161 4.161 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.239 0.761 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.068 0.932 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.835 0.453 1.236 17.883 hybrid contribution -1.463 0.914 -0.279 1.747 sum 16.372 1.366 0.957 16.456 Atomic orbital electron populations 1.21678 0.92975 1.01606 1.03202 1.21392 0.96846 1.01272 0.91943 0.86212 1.21091 0.79236 0.84187 0.85427 1.90638 1.39804 1.27607 1.87372 1.46208 1.53373 1.32098 1.05770 1.21353 0.98053 0.96299 0.82811 1.22946 0.86561 0.99983 0.95388 0.89929 1.22697 0.98832 1.01365 0.91935 1.22821 0.92911 1.03285 0.97824 1.22668 0.97518 1.00681 0.86621 1.62992 1.03660 1.38786 1.19472 1.22007 0.91779 0.92907 1.00911 1.20748 0.88197 0.85735 0.82443 1.90507 1.79282 1.21854 1.58482 1.41862 1.10687 1.13045 1.55359 1.19522 0.88439 0.98251 1.39801 0.90862 1.25866 1.03267 0.94954 0.96530 1.69635 1.38053 1.04374 1.43621 0.85124 0.77643 0.77876 0.78525 1.20049 1.19353 1.19996 1.22342 0.96968 0.98781 0.93373 1.23002 0.97899 0.99677 0.95912 1.22850 0.97713 1.01153 0.95789 1.22770 0.95290 1.01313 0.96764 0.94414 0.89862 0.92919 0.76054 0.93388 0.89826 0.87390 0.90784 0.89511 0.89819 0.93049 0.94277 0.88324 0.90777 0.77019 0.91344 0.91039 0.88686 0.91099 0.90333 0.90148 0.93154 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.07 71.98 0.65 -3.02 16 2 C -0.09 -2.21 2.46 -11.54 -0.03 -2.24 16 3 H 0.12 2.19 7.98 -2.39 -0.02 2.17 16 4 C 0.51 14.81 6.97 87.66 0.61 15.42 16 5 O -0.57 -20.26 14.94 -3.03 -0.05 -20.31 16 6 N -0.72 -18.56 5.28 -463.05 -2.45 -21.01 16 7 C 0.14 3.42 5.37 86.38 0.46 3.88 16 8 C 0.06 1.29 2.60 45.38 0.12 1.41 16 9 H 0.08 1.46 7.81 -2.39 -0.02 1.44 16 10 C -0.11 -1.90 6.52 32.08 0.21 -1.69 16 11 C -0.13 -2.49 6.95 31.88 0.22 -2.27 16 12 C 0.05 1.58 5.95 86.64 0.52 2.09 16 13 N -0.52 -16.16 4.39 -865.16 -3.80 -19.96 16 14 C 0.06 1.82 4.96 85.56 0.42 2.24 16 15 C 0.44 20.50 7.58 87.66 0.66 21.16 16 16 O -0.62 -34.22 15.39 -3.07 -0.05 -34.27 16 17 N -0.57 -28.28 5.29 -306.99 -1.62 -29.90 16 18 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 19 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 20 C -0.01 -0.31 5.50 84.93 0.47 0.16 16 21 N -0.92 -47.76 13.05 21.66 0.28 -47.48 16 22 Si 0.98 42.51 29.55 68.60 2.03 44.54 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C -0.10 -2.22 2.68 -10.27 -0.03 -2.24 16 27 C -0.13 -2.25 7.63 31.18 0.24 -2.01 16 28 C -0.14 -2.37 8.09 31.18 0.25 -2.12 16 29 C -0.12 -2.71 6.29 31.12 0.20 -2.52 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.50 7.56 -2.39 -0.02 1.48 16 33 H 0.40 9.34 5.02 -92.71 -0.47 8.87 16 34 H 0.05 1.49 8.12 -2.38 -0.02 1.47 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.39 8.06 -2.38 -0.02 1.38 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.04 1.26 7.36 -2.39 -0.02 1.24 16 42 H 0.10 2.74 5.08 -2.39 -0.01 2.73 16 43 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 44 H 0.40 18.34 7.90 -92.71 -0.73 17.61 16 45 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.09 1.42 7.99 -2.39 -0.02 1.40 16 48 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.05 1.30 8.00 -2.39 -0.02 1.28 16 52 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 Total: -1.00 -71.91 409.30 -0.14 -72.05 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -0.28 Total: 45.68 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.79 Total: 10.64 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -7.58 Total: -118.34 kcal Atomic # 8 Polarization: -54.48 SS G_CDS: -0.09 Total: -54.58 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -71.91 -0.14 -72.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.857 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds