Wall clock time and date at job start Tue Mar 31 2020 20:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47341 * 2 1 4 4 C 1.50699 * 109.47395 * 240.00144 * 2 1 3 5 5 O 1.21282 * 119.99791 * 240.00016 * 4 2 1 6 6 N 1.34776 * 120.00174 * 59.99913 * 4 2 1 7 7 C 1.46494 * 120.00121 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47286 * 186.88530 * 7 6 4 9 9 H 1.09000 * 110.72921 * 302.77269 * 8 7 6 10 10 C 1.54939 * 110.66899 * 179.67330 * 8 7 6 11 11 C 1.54595 * 102.92097 * 204.15627 * 10 8 7 12 12 C 1.53997 * 105.14259 * 21.95714 * 11 10 8 13 13 N 1.47899 * 107.05456 * 1.22455 * 12 11 10 14 14 C 1.46904 * 111.00158 * 214.15257 * 13 12 11 15 15 C 1.50705 * 109.46556 * 63.68208 * 14 13 12 16 16 O 1.21292 * 120.00277 * 352.97411 * 15 14 13 17 17 N 1.34779 * 119.99608 * 172.97082 * 15 14 13 18 18 C 1.37103 * 119.99516 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99437 * 180.27669 * 18 17 15 21 21 N 1.31415 * 119.99380 * 179.72717 * 20 18 17 22 22 Si 1.86800 * 120.00261 * 359.72742 * 20 18 17 23 23 H 1.48493 * 109.47130 * 90.00045 * 22 20 18 24 24 H 1.48505 * 109.47025 * 210.00364 * 22 20 18 25 25 H 1.48500 * 109.46839 * 329.99771 * 22 20 18 26 26 C 1.53006 * 109.47029 * 119.99843 * 2 1 3 27 27 C 1.53779 * 113.61494 * 277.49774 * 26 2 1 28 28 C 1.53781 * 87.08045 * 220.01776 * 27 26 2 29 29 C 1.53780 * 87.08231 * 25.43350 * 28 27 26 30 30 H 1.09003 * 109.47269 * 59.99981 * 1 2 3 31 31 H 1.09001 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47275 * 300.00310 * 1 2 3 33 33 H 0.97003 * 119.99720 * 359.97438 * 6 4 2 34 34 H 1.09009 * 109.46900 * 66.88992 * 7 6 4 35 35 H 1.08998 * 109.47241 * 306.88983 * 7 6 4 36 36 H 1.08997 * 110.72378 * 85.79522 * 10 8 7 37 37 H 1.09000 * 110.87483 * 322.58629 * 10 8 7 38 38 H 1.08998 * 110.30640 * 263.04002 * 11 10 8 39 39 H 1.09001 * 110.39138 * 140.91418 * 11 10 8 40 40 H 1.08996 * 109.91543 * 241.87465 * 12 11 10 41 41 H 1.08998 * 110.08401 * 120.66671 * 12 11 10 42 42 H 1.08998 * 109.47267 * 303.69069 * 14 13 12 43 43 H 1.08995 * 109.47480 * 183.68216 * 14 13 12 44 44 H 0.96997 * 120.00075 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99669 * 179.97438 * 21 20 18 46 46 H 1.09000 * 112.84686 * 48.80668 * 26 2 1 47 47 H 1.09001 * 113.61734 * 334.57064 * 27 26 2 48 48 H 1.09001 * 113.61433 * 105.46948 * 27 26 2 49 49 H 1.08999 * 113.61454 * 270.88115 * 28 27 26 50 50 H 1.09000 * 113.68710 * 139.99115 * 28 27 26 51 51 H 1.08996 * 113.61635 * 220.02144 * 29 28 27 52 52 H 1.09000 * 113.68812 * 89.12270 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6507 8 6 1.8310 -0.1267 -4.8939 9 1 0.7545 0.0359 -4.9473 10 6 2.3421 -0.8295 -6.1767 11 6 2.4690 0.3373 -7.1829 12 6 2.5860 1.6049 -6.3164 13 7 2.5579 1.1686 -4.9035 14 6 1.8778 2.1603 -4.0596 15 6 0.4352 2.2731 -4.4807 16 8 0.0454 1.6922 -5.4716 17 7 -0.4219 3.0194 -3.7561 18 6 -1.7342 3.1224 -4.1395 19 1 -2.0812 2.6053 -5.0218 20 6 -2.6164 3.8965 -3.3957 21 7 -3.8730 3.9996 -3.7662 22 14 -2.0163 4.7905 -1.8693 23 1 -1.5355 6.1442 -2.2454 24 1 -3.1321 4.9138 -0.8971 25 1 -0.9043 4.0240 -1.2519 26 6 2.0399 -0.7212 1.2493 27 6 2.0719 0.1676 2.5038 28 6 3.4106 -0.5053 2.8504 29 6 3.5738 -0.7768 1.3456 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1488 0.5385 -2.5436 34 1 1.7338 -1.9266 -3.7143 35 1 3.2777 -1.0492 -3.5913 36 1 1.6184 -1.5649 -6.5280 37 1 3.3116 -1.2967 -6.0036 38 1 1.5818 0.3909 -7.8138 39 1 3.3617 0.2146 -7.7962 40 1 1.7461 2.2702 -6.5163 41 1 3.5243 2.1177 -6.5280 42 1 2.3657 3.1285 -4.1717 43 1 1.9285 1.8463 -3.0171 44 1 -0.1101 3.4842 -2.9639 45 1 -4.4891 4.5396 -3.2468 46 1 1.5573 -1.6856 1.4079 47 1 2.1620 1.2312 2.2832 48 1 1.2757 -0.0523 3.2151 49 1 3.3026 -1.4102 3.4482 50 1 4.1547 0.1819 3.2532 51 1 3.9899 -1.7590 1.1217 52 1 4.0744 0.0278 0.8071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:26 Heat of formation + Delta-G solvation = -42.581305 kcal Electronic energy + Delta-G solvation = -31445.939234 eV Core-core repulsion = 27446.160652 eV Total energy + Delta-G solvation = -3999.778582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.46957 -39.76977 -38.16136 -37.33925 -34.51317 -34.12064 -33.00972 -32.16481 -31.68251 -29.62624 -26.91910 -26.09082 -25.44010 -25.11616 -24.06742 -22.58491 -20.91502 -20.53226 -19.81963 -19.56501 -19.36999 -18.33659 -17.09719 -16.51299 -15.95857 -15.67537 -15.46185 -15.14616 -15.04848 -14.76303 -14.60341 -14.26380 -14.08108 -13.71062 -13.47937 -13.02397 -12.86898 -12.69708 -12.59657 -12.48605 -12.26553 -12.20498 -12.04378 -11.75546 -11.72701 -11.35895 -11.30540 -11.24860 -11.06312 -10.90107 -10.79965 -10.73177 -10.60942 -10.42183 -10.30049 -10.15214 -10.14022 -9.59452 -9.44182 -9.38945 -8.82590 -8.33747 -7.73484 -6.47947 -3.99903 2.81321 2.88309 2.94724 3.04515 3.32334 3.45974 3.95098 4.19871 4.45370 4.47940 4.56577 4.58513 4.81542 4.89575 4.96023 4.97765 5.06857 5.12564 5.18740 5.28935 5.31981 5.45440 5.57709 5.63530 5.64857 5.67192 5.69705 5.72108 5.74894 5.76142 5.78139 5.82256 5.89577 5.92792 5.95449 6.08477 6.08682 6.17822 6.23139 6.24382 6.29142 6.45258 6.48736 6.55288 6.64619 7.10997 7.19115 7.38272 7.64293 7.96145 8.38200 8.38497 8.76229 9.23259 9.58775 10.64370 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007678 B = 0.005000 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3645.842498 B = 5598.314139 C = 8528.681257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 H 0.095 0.905 4 C 0.517 3.483 5 O -0.541 6.541 6 N -0.727 5.727 7 C 0.135 3.865 8 C 0.028 3.972 9 H 0.108 0.892 10 C -0.107 4.107 11 C -0.119 4.119 12 C 0.034 3.966 13 N -0.488 5.488 14 C 0.019 3.981 15 C 0.406 3.594 16 O -0.568 6.568 17 N -0.579 5.579 18 C -0.310 4.310 19 H 0.120 0.880 20 C 0.046 3.954 21 N -0.873 5.873 22 Si 0.876 3.124 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.267 1.267 26 C -0.086 4.086 27 C -0.137 4.137 28 C -0.146 4.146 29 C -0.122 4.122 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.371 0.629 45 H 0.275 0.725 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.961 -5.505 7.702 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 H 0.113 0.887 4 C 0.303 3.697 5 O -0.419 6.419 6 N -0.382 5.382 7 C 0.011 3.989 8 C -0.080 4.080 9 H 0.125 0.875 10 C -0.146 4.146 11 C -0.157 4.157 12 C -0.094 4.094 13 N -0.211 5.211 14 C -0.114 4.114 15 C 0.192 3.808 16 O -0.453 6.453 17 N -0.217 5.217 18 C -0.439 4.439 19 H 0.138 0.862 20 C -0.158 4.158 21 N -0.512 5.512 22 Si 0.703 3.297 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.193 1.193 26 C -0.105 4.105 27 C -0.174 4.174 28 C -0.184 4.184 29 C -0.159 4.159 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.090 0.910 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.506 -6.560 7.352 16.718 hybrid contribution -0.943 1.509 0.852 1.973 sum 12.563 -5.051 8.204 15.832 Atomic orbital electron populations 1.21786 0.92655 1.02845 1.03162 1.21401 0.97692 1.00448 0.93055 0.88728 1.20613 0.79951 0.84617 0.84530 1.90652 1.38001 1.26316 1.86905 1.46414 1.53490 1.32379 1.05870 1.21350 0.99867 0.94793 0.82863 1.23505 1.01291 0.89512 0.93652 0.87476 1.22295 1.00830 0.97335 0.94111 1.22215 1.01458 0.94339 0.97659 1.22849 1.01323 0.97880 0.87335 1.65106 1.45705 1.01956 1.08360 1.22429 0.92021 0.98182 0.98787 1.20908 0.88128 0.84878 0.86860 1.90505 1.78433 1.48814 1.27588 1.42441 1.10226 1.43793 1.25257 1.19445 0.82335 1.29278 1.12837 0.86212 1.25076 0.95227 0.97336 0.98202 1.69621 1.03195 1.38998 1.39370 0.86722 0.79154 0.80767 0.83108 1.19494 1.19965 1.19289 1.22324 0.96925 0.98868 0.92398 1.22988 0.97771 0.99276 0.97376 1.22853 0.97608 1.00601 0.97317 1.22786 0.95763 1.02412 0.94980 0.91732 0.92021 0.91304 0.76178 0.91768 0.90834 0.91245 0.91335 0.91300 0.91955 0.91095 0.91645 0.88844 0.89448 0.79659 0.91394 0.88974 0.90106 0.91562 0.90452 0.91746 0.90992 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.08 37.15 0.34 -1.40 16 2 C -0.10 -1.25 2.48 -91.77 -0.23 -1.47 16 3 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 4 C 0.52 7.51 6.96 -10.99 -0.08 7.43 16 5 O -0.54 -9.21 14.82 5.56 0.08 -9.13 16 6 N -0.73 -10.51 4.57 -60.30 -0.28 -10.79 16 7 C 0.14 1.97 5.41 -4.05 -0.02 1.95 16 8 C 0.03 0.44 2.18 -65.79 -0.14 0.29 16 9 H 0.11 2.02 5.05 -51.93 -0.26 1.76 16 10 C -0.11 -1.44 6.50 -24.87 -0.16 -1.60 16 11 C -0.12 -1.62 6.93 -25.37 -0.18 -1.80 16 12 C 0.03 0.51 6.01 -2.75 -0.02 0.50 16 13 N -0.49 -7.44 5.23 -224.06 -1.17 -8.61 16 14 C 0.02 0.29 5.32 -4.97 -0.03 0.26 16 15 C 0.41 8.10 6.34 -10.98 -0.07 8.03 16 16 O -0.57 -13.11 11.37 5.55 0.06 -13.05 16 17 N -0.58 -12.34 5.09 -10.96 -0.06 -12.40 16 18 C -0.31 -8.07 10.16 -14.93 -0.15 -8.22 16 19 H 0.12 3.61 7.39 -52.49 -0.39 3.23 16 20 C 0.05 1.18 5.50 -17.47 -0.10 1.08 16 21 N -0.87 -24.13 13.96 55.50 0.77 -23.36 16 22 Si 0.88 17.97 27.73 -169.99 -4.71 13.26 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.27 -4.84 6.52 56.52 0.37 -4.47 16 26 C -0.09 -0.96 2.72 -89.80 -0.24 -1.21 16 27 C -0.14 -1.27 7.63 -25.92 -0.20 -1.47 16 28 C -0.15 -1.34 8.08 -25.92 -0.21 -1.55 16 29 C -0.12 -1.37 6.19 -25.92 -0.16 -1.53 16 30 H 0.06 0.84 7.56 -51.93 -0.39 0.45 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 5.86 4.90 -40.82 -0.20 5.66 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.28 5.79 -51.93 -0.30 0.98 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.23 5.30 -51.93 -0.28 0.95 16 44 H 0.37 6.95 5.77 -40.82 -0.24 6.71 16 45 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 52 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -29.56 396.91 -9.75 -39.31 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -8.79 Total: 19.48 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.64 Total: -0.70 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.73 Total: -55.15 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.15 Total: -22.18 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.71 Total: 13.26 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.56 -9.75 -39.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.270 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds