Wall clock time and date at job start Tue Mar 31 2020 20:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47341 * 2 1 4 4 C 1.50699 * 109.47395 * 240.00144 * 2 1 3 5 5 O 1.21282 * 119.99791 * 240.00016 * 4 2 1 6 6 N 1.34776 * 120.00174 * 59.99913 * 4 2 1 7 7 C 1.46494 * 120.00121 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.47286 * 186.88530 * 7 6 4 9 9 H 1.09000 * 110.72921 * 302.77269 * 8 7 6 10 10 C 1.54939 * 110.66899 * 179.67330 * 8 7 6 11 11 C 1.54595 * 102.92097 * 204.15627 * 10 8 7 12 12 C 1.53997 * 105.14259 * 21.95714 * 11 10 8 13 13 N 1.47899 * 107.05456 * 1.22455 * 12 11 10 14 14 C 1.46904 * 111.00158 * 214.15257 * 13 12 11 15 15 C 1.50705 * 109.46556 * 63.68208 * 14 13 12 16 16 O 1.21292 * 120.00277 * 352.97411 * 15 14 13 17 17 N 1.34779 * 119.99608 * 172.97082 * 15 14 13 18 18 C 1.37103 * 119.99516 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99437 * 180.27669 * 18 17 15 21 21 N 1.31415 * 119.99380 * 179.72717 * 20 18 17 22 22 Si 1.86800 * 120.00261 * 359.72742 * 20 18 17 23 23 H 1.48493 * 109.47130 * 90.00045 * 22 20 18 24 24 H 1.48505 * 109.47025 * 210.00364 * 22 20 18 25 25 H 1.48500 * 109.46839 * 329.99771 * 22 20 18 26 26 C 1.53006 * 109.47029 * 119.99843 * 2 1 3 27 27 C 1.53779 * 113.61494 * 277.49774 * 26 2 1 28 28 C 1.53781 * 87.08045 * 220.01776 * 27 26 2 29 29 C 1.53780 * 87.08231 * 25.43350 * 28 27 26 30 30 H 1.09003 * 109.47269 * 59.99981 * 1 2 3 31 31 H 1.09001 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47275 * 300.00310 * 1 2 3 33 33 H 0.97003 * 119.99720 * 359.97438 * 6 4 2 34 34 H 1.09009 * 109.46900 * 66.88992 * 7 6 4 35 35 H 1.08998 * 109.47241 * 306.88983 * 7 6 4 36 36 H 1.08997 * 110.72378 * 85.79522 * 10 8 7 37 37 H 1.09000 * 110.87483 * 322.58629 * 10 8 7 38 38 H 1.08998 * 110.30640 * 263.04002 * 11 10 8 39 39 H 1.09001 * 110.39138 * 140.91418 * 11 10 8 40 40 H 1.08996 * 109.91543 * 241.87465 * 12 11 10 41 41 H 1.08998 * 110.08401 * 120.66671 * 12 11 10 42 42 H 1.08998 * 109.47267 * 303.69069 * 14 13 12 43 43 H 1.08995 * 109.47480 * 183.68216 * 14 13 12 44 44 H 0.96997 * 120.00075 * 0.02562 * 17 15 14 45 45 H 0.97005 * 119.99669 * 179.97438 * 21 20 18 46 46 H 1.09000 * 112.84686 * 48.80668 * 26 2 1 47 47 H 1.09001 * 113.61734 * 334.57064 * 27 26 2 48 48 H 1.09001 * 113.61433 * 105.46948 * 27 26 2 49 49 H 1.08999 * 113.61454 * 270.88115 * 28 27 26 50 50 H 1.09000 * 113.68710 * 139.99115 * 28 27 26 51 51 H 1.08996 * 113.61635 * 220.02144 * 29 28 27 52 52 H 1.09000 * 113.68812 * 89.12270 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6964 -1.1191 6 7 1.7068 -0.2499 -2.4546 7 6 2.1947 -0.9408 -3.6507 8 6 1.8310 -0.1267 -4.8939 9 1 0.7545 0.0359 -4.9473 10 6 2.3421 -0.8295 -6.1767 11 6 2.4690 0.3373 -7.1829 12 6 2.5860 1.6049 -6.3164 13 7 2.5579 1.1686 -4.9035 14 6 1.8778 2.1603 -4.0596 15 6 0.4352 2.2731 -4.4807 16 8 0.0454 1.6922 -5.4716 17 7 -0.4219 3.0194 -3.7561 18 6 -1.7342 3.1224 -4.1395 19 1 -2.0812 2.6053 -5.0218 20 6 -2.6164 3.8965 -3.3957 21 7 -3.8730 3.9996 -3.7662 22 14 -2.0163 4.7905 -1.8693 23 1 -1.5355 6.1442 -2.2454 24 1 -3.1321 4.9138 -0.8971 25 1 -0.9043 4.0240 -1.2519 26 6 2.0399 -0.7212 1.2493 27 6 2.0719 0.1676 2.5038 28 6 3.4106 -0.5053 2.8504 29 6 3.5738 -0.7768 1.3456 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1488 0.5385 -2.5436 34 1 1.7338 -1.9266 -3.7143 35 1 3.2777 -1.0492 -3.5913 36 1 1.6184 -1.5649 -6.5280 37 1 3.3116 -1.2967 -6.0036 38 1 1.5818 0.3909 -7.8138 39 1 3.3617 0.2146 -7.7962 40 1 1.7461 2.2702 -6.5163 41 1 3.5243 2.1177 -6.5280 42 1 2.3657 3.1285 -4.1717 43 1 1.9285 1.8463 -3.0171 44 1 -0.1101 3.4842 -2.9639 45 1 -4.4891 4.5396 -3.2468 46 1 1.5573 -1.6856 1.4079 47 1 2.1620 1.2312 2.2832 48 1 1.2757 -0.0523 3.2151 49 1 3.3026 -1.4102 3.4482 50 1 4.1547 0.1819 3.2532 51 1 3.9899 -1.7590 1.1217 52 1 4.0744 0.0278 0.8071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:25 Heat of formation + Delta-G solvation = -63.079024 kcal Electronic energy + Delta-G solvation = -31446.828082 eV Core-core repulsion = 27446.160652 eV Total energy + Delta-G solvation = -4000.667430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72098 -40.98695 -39.24748 -38.72055 -36.03042 -35.62798 -33.97237 -33.85341 -33.18477 -30.80560 -28.42986 -26.96705 -26.43490 -26.17586 -25.61348 -23.61075 -22.07789 -21.87927 -21.29760 -20.82843 -20.32133 -19.99065 -18.35367 -17.77262 -17.23216 -17.02358 -16.82079 -16.35683 -16.13501 -16.10668 -15.84273 -15.48522 -15.27314 -15.10556 -14.83532 -14.55452 -14.32535 -13.94544 -13.60073 -13.51999 -13.39762 -13.24388 -13.11137 -13.08087 -12.86120 -12.56715 -12.53084 -12.40606 -12.27228 -12.14277 -12.11567 -11.99937 -11.97958 -11.63962 -11.40588 -11.27292 -11.20619 -10.97647 -10.95564 -10.53302 -10.21001 -10.03111 -9.19495 -8.42187 -6.02712 1.29493 1.34717 1.44303 1.67339 1.85065 2.20804 2.22391 2.87609 2.94594 3.14575 3.53032 3.70826 3.75510 3.76881 3.78609 3.96703 4.04684 4.09348 4.15348 4.29227 4.30378 4.35221 4.40141 4.42355 4.44446 4.51687 4.60961 4.74751 4.78638 4.83973 4.86460 4.92090 4.95187 4.95761 5.04842 5.07710 5.12469 5.14888 5.20536 5.23373 5.29291 5.38850 5.43839 5.45316 5.51226 5.66381 5.85356 5.86207 5.99420 6.48051 6.54602 6.85801 7.23164 7.35531 7.88794 8.74712 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007678 B = 0.005000 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3645.842498 B = 5598.314139 C = 8528.681257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 H 0.114 0.886 4 C 0.514 3.486 5 O -0.569 6.569 6 N -0.727 5.727 7 C 0.142 3.858 8 C 0.031 3.969 9 H 0.069 0.931 10 C -0.105 4.105 11 C -0.117 4.117 12 C 0.032 3.968 13 N -0.479 5.479 14 C 0.027 3.973 15 C 0.416 3.584 16 O -0.600 6.600 17 N -0.582 5.582 18 C -0.324 4.324 19 H 0.057 0.943 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.953 3.047 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.221 1.221 26 C -0.091 4.091 27 C -0.127 4.127 28 C -0.139 4.139 29 C -0.127 4.127 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.400 0.600 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.090 0.910 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.388 0.612 45 H 0.278 0.722 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.050 0.950 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.843 -4.511 10.319 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.132 0.868 4 C 0.302 3.698 5 O -0.448 6.448 6 N -0.381 5.381 7 C 0.018 3.982 8 C -0.077 4.077 9 H 0.087 0.913 10 C -0.143 4.143 11 C -0.155 4.155 12 C -0.096 4.096 13 N -0.201 5.201 14 C -0.106 4.106 15 C 0.203 3.797 16 O -0.486 6.486 17 N -0.223 5.223 18 C -0.453 4.453 19 H 0.075 0.925 20 C -0.209 4.209 21 N -0.571 5.571 22 Si 0.773 3.227 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.144 1.144 26 C -0.110 4.110 27 C -0.164 4.164 28 C -0.176 4.176 29 C -0.165 4.165 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.069 0.931 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.417 -5.582 9.958 19.996 hybrid contribution -1.818 1.065 -0.147 2.112 sum 14.600 -4.517 9.811 18.161 Atomic orbital electron populations 1.21779 0.92534 1.02526 1.03409 1.21452 0.97605 1.01145 0.91857 0.86772 1.21149 0.79284 0.84290 0.85111 1.90643 1.39307 1.27581 1.87262 1.46456 1.53342 1.32283 1.06018 1.21255 0.99847 0.94522 0.82599 1.23362 0.99041 0.90173 0.95148 0.91296 1.22336 1.01865 0.97239 0.92886 1.22219 1.01921 0.93765 0.97604 1.22891 1.01061 0.98096 0.87526 1.65183 1.44772 1.01708 1.08445 1.22559 0.88306 0.99857 0.99887 1.21912 0.89737 0.82556 0.85499 1.90521 1.79602 1.49446 1.29046 1.42219 1.08581 1.45082 1.26403 1.18965 0.84897 1.29798 1.11683 0.92502 1.26063 0.94854 0.97814 1.02180 1.69804 1.05143 1.40592 1.41601 0.85532 0.79901 0.79599 0.77668 1.18631 1.20221 1.14395 1.22349 0.96657 0.98961 0.93059 1.22968 0.97944 0.99399 0.96116 1.22830 0.97963 1.01074 0.95758 1.22780 0.95699 1.01189 0.96783 0.93077 0.92761 0.89337 0.76260 0.92063 0.90558 0.91087 0.89222 0.93264 0.89098 0.94507 0.89181 0.86090 0.87188 0.77624 0.91217 0.90090 0.89016 0.90583 0.90054 0.90566 0.93102 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.08 71.98 0.65 -2.46 16 2 C -0.10 -2.13 2.48 -11.54 -0.03 -2.16 16 3 H 0.11 2.02 7.94 -2.39 -0.02 2.01 16 4 C 0.51 14.20 6.96 87.66 0.61 14.81 16 5 O -0.57 -18.92 14.82 -3.04 -0.04 -18.96 16 6 N -0.73 -20.05 4.57 -463.07 -2.12 -22.17 16 7 C 0.14 3.99 5.41 86.38 0.47 4.46 16 8 C 0.03 0.94 2.18 45.26 0.10 1.04 16 9 H 0.07 2.68 5.05 -2.39 -0.01 2.67 16 10 C -0.10 -2.68 6.50 31.80 0.21 -2.48 16 11 C -0.12 -3.07 6.93 31.47 0.22 -2.85 16 12 C 0.03 0.93 6.01 86.45 0.52 1.44 16 13 N -0.48 -13.67 5.23 -862.78 -4.51 -18.18 16 14 C 0.03 0.76 5.32 85.56 0.46 1.22 16 15 C 0.42 16.57 6.34 87.66 0.56 17.12 16 16 O -0.60 -28.89 11.37 -3.07 -0.03 -28.92 16 17 N -0.58 -24.61 5.09 -306.97 -1.56 -26.17 16 18 C -0.32 -17.56 10.16 84.04 0.85 -16.70 16 19 H 0.06 3.73 7.39 -2.91 -0.02 3.70 16 20 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 21 N -0.93 -53.71 13.96 21.66 0.30 -53.41 16 22 Si 0.95 35.82 27.73 68.60 1.90 37.72 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 24 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 25 H -0.22 -6.59 6.52 99.48 0.65 -5.94 16 26 C -0.09 -1.84 2.72 -10.27 -0.03 -1.87 16 27 C -0.13 -1.92 7.63 31.12 0.24 -1.68 16 28 C -0.14 -2.17 8.08 31.12 0.25 -1.92 16 29 C -0.13 -2.63 6.19 31.12 0.19 -2.44 16 30 H 0.05 1.24 7.56 -2.39 -0.02 1.22 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.40 11.09 4.90 -92.71 -0.45 10.63 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.74 16 35 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.94 8.06 -2.39 -0.02 1.93 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.33 5.79 -2.39 -0.01 1.31 16 41 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 42 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.11 2.72 5.30 -2.39 -0.01 2.71 16 44 H 0.39 13.51 5.77 -92.71 -0.53 12.97 16 45 H 0.28 14.76 8.31 -92.70 -0.77 13.99 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 47 H 0.09 1.22 7.96 -2.39 -0.02 1.20 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 52 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -69.93 396.91 -0.46 -70.39 By element: Atomic # 1 Polarization: 54.35 SS G_CDS: -0.12 Total: 54.22 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.73 Total: 5.48 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -7.89 Total: -119.93 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -0.08 Total: -47.88 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 1.90 Total: 37.72 kcal Total: -69.93 -0.46 -70.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.310 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds