Wall clock time and date at job start Tue Mar 31 2020 20:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47270 * 2 1 4 4 C 1.50699 * 109.47026 * 120.00198 * 2 1 3 5 5 O 1.21282 * 119.99791 * 119.99868 * 4 2 1 6 6 N 1.34776 * 120.00174 * 299.99765 * 4 2 1 7 7 C 1.46494 * 120.00121 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47121 * 186.85098 * 7 6 4 9 9 H 1.09000 * 110.72684 * 302.80206 * 8 7 6 10 10 C 1.54940 * 110.66467 * 179.70429 * 8 7 6 11 11 C 1.54595 * 102.91819 * 204.15423 * 10 8 7 12 12 C 1.53988 * 105.14327 * 21.95743 * 11 10 8 13 13 N 1.47901 * 107.05598 * 1.22346 * 12 11 10 14 14 C 1.46901 * 111.00165 * 214.15701 * 13 12 11 15 15 C 1.50693 * 109.47245 * 63.67381 * 14 13 12 16 16 O 1.21289 * 120.00155 * 352.96312 * 15 14 13 17 17 N 1.34780 * 120.00132 * 172.96741 * 15 14 13 18 18 C 1.37098 * 119.99829 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00343 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99628 * 180.27227 * 18 17 15 21 21 N 1.31419 * 120.00041 * 359.72581 * 20 18 17 22 22 Si 1.86802 * 119.99977 * 179.72786 * 20 18 17 23 23 H 1.48497 * 109.46920 * 60.00200 * 22 20 18 24 24 H 1.48497 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47032 * 299.99942 * 22 20 18 26 26 C 1.53006 * 109.46850 * 240.00163 * 2 1 3 27 27 C 1.53778 * 113.61205 * 157.49604 * 26 2 1 28 28 C 1.53777 * 87.08318 * 220.01860 * 27 26 2 29 29 C 1.53778 * 113.61386 * 60.00081 * 26 2 1 30 30 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47037 * 299.99621 * 1 2 3 32 32 H 1.09001 * 109.47081 * 60.00059 * 1 2 3 33 33 H 0.97003 * 119.99720 * 359.97438 * 6 4 2 34 34 H 1.09007 * 109.46798 * 66.85256 * 7 6 4 35 35 H 1.08996 * 109.47367 * 306.85416 * 7 6 4 36 36 H 1.08994 * 110.72514 * 85.79799 * 10 8 7 37 37 H 1.08995 * 110.87555 * 322.58180 * 10 8 7 38 38 H 1.09007 * 110.30907 * 263.04048 * 11 10 8 39 39 H 1.08996 * 110.39622 * 140.92350 * 11 10 8 40 40 H 1.09006 * 109.91878 * 241.87548 * 12 11 10 41 41 H 1.08998 * 110.08534 * 120.67069 * 12 11 10 42 42 H 1.09005 * 109.46745 * 303.67361 * 14 13 12 43 43 H 1.09003 * 109.46987 * 183.67669 * 14 13 12 44 44 H 0.97003 * 119.99820 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99803 * 179.97438 * 21 20 18 46 46 H 1.09003 * 112.84563 * 288.80354 * 26 2 1 47 47 H 1.09000 * 113.61970 * 334.56612 * 27 26 2 48 48 H 1.09003 * 113.61182 * 105.47296 * 27 26 2 49 49 H 1.09004 * 113.61572 * 270.88859 * 28 27 26 50 50 H 1.08996 * 113.69535 * 139.99154 * 28 27 26 51 51 H 1.09000 * 113.61427 * 254.52852 * 29 26 2 52 52 H 1.08996 * 113.61714 * 25.34763 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1955 -0.9403 3.6507 8 6 1.5499 -0.3254 4.8940 9 1 1.7555 0.7437 4.9468 10 6 2.0428 -1.0411 6.1768 11 6 0.9010 -0.7713 7.1835 12 6 -0.3335 -0.4593 6.3176 13 7 0.0864 -0.5789 4.9045 14 6 -0.6221 0.3927 4.0607 15 6 -0.2474 1.7904 4.4809 16 8 0.4304 1.9647 5.4715 17 7 -0.6656 2.8470 3.7561 18 6 -0.3251 4.1187 4.1389 19 1 0.2785 4.2739 5.0208 20 6 -0.7610 5.2083 3.3948 21 7 -1.4951 5.0194 2.3212 22 14 -0.3035 6.9414 3.9205 23 1 1.1748 7.0818 3.9299 24 1 -0.8879 7.9184 2.9670 25 1 -0.8343 7.2019 5.2827 26 6 2.0400 -0.7213 -1.2493 27 6 3.4726 -0.3276 -1.6462 28 6 2.9921 -0.3572 -3.1067 29 6 1.5811 -0.0722 -2.5657 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1494 0.5389 2.5436 34 1 3.2787 -0.8349 3.7139 35 1 1.9362 -1.9974 3.5916 36 1 2.9776 -0.6038 6.5274 37 1 2.1599 -2.1109 6.0040 38 1 1.1467 0.0834 7.8140 39 1 0.7195 -1.6534 7.7974 40 1 -0.6806 0.5545 6.5172 41 1 -1.1297 -1.1728 6.5300 42 1 -1.6976 0.2554 4.1732 43 1 -0.3434 0.2397 3.0180 44 1 -1.2075 2.7076 2.9637 45 1 -1.7997 5.7801 1.8020 46 1 1.8758 -1.7982 -1.2129 47 1 3.7639 0.6649 -1.3024 48 1 4.2151 -1.0915 -1.4153 49 1 3.0896 -1.3349 -3.5787 50 1 3.3969 0.4498 -3.7173 51 1 0.7965 -0.6299 -3.0772 52 1 1.3538 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:31 Heat of formation + Delta-G solvation = -50.810218 kcal Electronic energy + Delta-G solvation = -31308.269755 eV Core-core repulsion = 27308.134340 eV Total energy + Delta-G solvation = -4000.135414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.36718 -39.63756 -38.15545 -37.20359 -34.44135 -34.06844 -32.88926 -31.99884 -31.28487 -29.56099 -26.73492 -26.20517 -25.29382 -25.02127 -24.20769 -22.54704 -20.85094 -20.52042 -19.77528 -19.39306 -19.13182 -17.99576 -17.14265 -16.33984 -15.86730 -15.70027 -15.32758 -15.04638 -14.84616 -14.64888 -14.48845 -14.23133 -14.01657 -13.87284 -13.52570 -13.05993 -12.81185 -12.64300 -12.50666 -12.30727 -12.16619 -11.98192 -11.79624 -11.60545 -11.57603 -11.21807 -11.18053 -11.13842 -11.01079 -10.81513 -10.72474 -10.56297 -10.51031 -10.36847 -10.31821 -10.23900 -10.11958 -9.52130 -9.42068 -9.28572 -8.75658 -8.12600 -7.62864 -6.57920 -3.99619 2.88912 3.07422 3.16489 3.19929 3.41236 3.64910 4.04126 4.29171 4.53625 4.62345 4.65953 4.81835 4.84626 4.95270 5.00035 5.05829 5.10445 5.18816 5.26961 5.39365 5.42640 5.54800 5.66188 5.70495 5.72502 5.73728 5.74053 5.82053 5.82937 5.87040 5.91379 5.96737 5.98900 6.00522 6.04822 6.07859 6.12812 6.23945 6.27667 6.28542 6.34689 6.52714 6.56505 6.61550 6.72257 7.19785 7.29776 7.39379 7.72574 7.86977 8.40118 8.45428 8.99456 9.33309 9.82693 10.57926 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007473 B = 0.004586 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3745.683250 B = 6104.082163 C = 9039.518552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 H 0.097 0.903 4 C 0.517 3.483 5 O -0.547 6.547 6 N -0.726 5.726 7 C 0.135 3.865 8 C 0.029 3.971 9 H 0.108 0.892 10 C -0.107 4.107 11 C -0.118 4.118 12 C 0.034 3.966 13 N -0.489 5.489 14 C 0.020 3.980 15 C 0.397 3.603 16 O -0.587 6.587 17 N -0.551 5.551 18 C -0.306 4.306 19 H 0.103 0.897 20 C 0.028 3.972 21 N -0.894 5.894 22 Si 0.929 3.071 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.086 4.086 27 C -0.134 4.134 28 C -0.143 4.143 29 C -0.136 4.136 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.274 0.726 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.066 0.934 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -10.026 -4.808 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.115 0.885 4 C 0.304 3.696 5 O -0.425 6.425 6 N -0.380 5.380 7 C 0.011 3.989 8 C -0.079 4.079 9 H 0.125 0.875 10 C -0.146 4.146 11 C -0.156 4.156 12 C -0.093 4.093 13 N -0.212 5.212 14 C -0.112 4.112 15 C 0.183 3.817 16 O -0.474 6.474 17 N -0.186 5.186 18 C -0.435 4.435 19 H 0.121 0.879 20 C -0.175 4.175 21 N -0.534 5.534 22 Si 0.756 3.244 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.104 4.104 27 C -0.171 4.171 28 C -0.181 4.181 29 C -0.174 4.174 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.084 0.916 46 H 0.114 0.886 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.976 -10.988 -4.577 12.550 hybrid contribution -0.390 2.166 0.123 2.204 sum 3.587 -8.823 -4.453 10.514 Atomic orbital electron populations 1.21762 0.92672 1.02542 1.03094 1.21384 0.97750 1.00628 0.92834 0.88510 1.20642 0.79861 0.84468 0.84635 1.90643 1.38238 1.26587 1.87000 1.46413 1.53685 1.32152 1.05794 1.21347 0.97505 0.97071 0.83006 1.23488 0.88438 1.02467 0.93486 0.87490 1.22293 0.98064 0.99997 0.94233 1.22207 0.94880 1.00883 0.97640 1.22832 0.97235 1.01771 0.87486 1.65098 1.03642 1.44211 1.08229 1.22406 1.00458 0.89657 0.98709 1.20959 0.86727 0.86981 0.87064 1.90460 1.43072 1.85586 1.28300 1.42080 1.45553 1.05624 1.25369 1.19662 1.31089 0.81439 1.11346 0.87924 1.25280 0.96283 1.00378 0.95532 1.69591 1.35017 1.32747 1.16067 0.85937 0.78957 0.81048 0.78446 1.19824 1.20835 1.19848 1.22327 0.96129 1.00181 0.91784 1.22910 0.96869 1.01680 0.95662 1.22798 0.97011 1.01592 0.96660 1.22973 0.96841 1.01204 0.96365 0.92129 0.92000 0.91108 0.75951 0.91899 0.90910 0.91375 0.91383 0.91435 0.92045 0.91124 0.91776 0.89075 0.89370 0.77415 0.91566 0.88574 0.90418 0.91362 0.90442 0.91673 0.91546 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.89 37.16 0.33 -1.33 16 2 C -0.10 -1.34 2.48 -91.77 -0.23 -1.56 16 3 H 0.10 1.23 7.94 -51.93 -0.41 0.81 16 4 C 0.52 7.99 7.15 -10.99 -0.08 7.91 16 5 O -0.55 -9.87 15.82 5.56 0.09 -9.78 16 6 N -0.73 -11.13 4.57 -60.30 -0.28 -11.41 16 7 C 0.13 2.06 5.41 -4.04 -0.02 2.04 16 8 C 0.03 0.47 2.18 -65.79 -0.14 0.33 16 9 H 0.11 2.08 5.05 -51.93 -0.26 1.82 16 10 C -0.11 -1.49 6.50 -24.87 -0.16 -1.65 16 11 C -0.12 -1.66 6.93 -25.38 -0.18 -1.84 16 12 C 0.03 0.55 6.01 -2.76 -0.02 0.53 16 13 N -0.49 -7.83 5.23 -224.06 -1.17 -9.00 16 14 C 0.02 0.34 5.32 -4.98 -0.03 0.31 16 15 C 0.40 8.26 6.34 -10.99 -0.07 8.19 16 16 O -0.59 -13.73 11.37 5.55 0.06 -13.67 16 17 N -0.55 -12.53 5.29 -10.97 -0.06 -12.59 16 18 C -0.31 -7.84 9.68 -14.93 -0.14 -7.98 16 19 H 0.10 2.79 7.16 -52.49 -0.38 2.41 16 20 C 0.03 0.70 5.50 -17.46 -0.10 0.61 16 21 N -0.89 -22.56 13.05 55.50 0.72 -21.84 16 22 Si 0.93 19.91 29.55 -169.99 -5.02 14.88 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 C -0.09 -1.01 2.54 -89.81 -0.23 -1.24 16 27 C -0.13 -1.54 7.60 -25.92 -0.20 -1.74 16 28 C -0.14 -1.38 8.08 -25.92 -0.21 -1.59 16 29 C -0.14 -1.35 6.68 -25.92 -0.17 -1.53 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.75 6.64 -51.93 -0.34 0.41 16 32 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 33 H 0.40 6.32 4.93 -40.82 -0.20 6.11 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 38 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.32 5.79 -51.93 -0.30 1.02 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.09 1.35 4.36 -51.93 -0.23 1.12 16 44 H 0.39 8.57 7.90 -40.82 -0.32 8.25 16 45 H 0.27 6.62 8.31 -40.82 -0.34 6.29 16 46 H 0.10 1.24 7.86 -51.93 -0.41 0.83 16 47 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.08 0.82 8.09 -51.93 -0.42 0.39 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -28.30 398.65 -9.98 -38.28 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -8.70 Total: 19.66 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.64 Total: -0.54 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.78 Total: -54.84 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.15 Total: -23.45 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.30 -9.98 -38.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.527 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds