Wall clock time and date at job start Tue Mar 31 2020 20:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47270 * 2 1 4 4 C 1.50699 * 109.47026 * 120.00198 * 2 1 3 5 5 O 1.21282 * 119.99791 * 119.99868 * 4 2 1 6 6 N 1.34776 * 120.00174 * 299.99765 * 4 2 1 7 7 C 1.46494 * 120.00121 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47121 * 186.85098 * 7 6 4 9 9 H 1.09000 * 110.72684 * 302.80206 * 8 7 6 10 10 C 1.54940 * 110.66467 * 179.70429 * 8 7 6 11 11 C 1.54595 * 102.91819 * 204.15423 * 10 8 7 12 12 C 1.53988 * 105.14327 * 21.95743 * 11 10 8 13 13 N 1.47901 * 107.05598 * 1.22346 * 12 11 10 14 14 C 1.46901 * 111.00165 * 214.15701 * 13 12 11 15 15 C 1.50693 * 109.47245 * 63.67381 * 14 13 12 16 16 O 1.21289 * 120.00155 * 352.96312 * 15 14 13 17 17 N 1.34780 * 120.00132 * 172.96741 * 15 14 13 18 18 C 1.37098 * 119.99829 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00343 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99628 * 180.27227 * 18 17 15 21 21 N 1.31419 * 120.00041 * 359.72581 * 20 18 17 22 22 Si 1.86802 * 119.99977 * 179.72786 * 20 18 17 23 23 H 1.48497 * 109.46920 * 60.00200 * 22 20 18 24 24 H 1.48497 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47032 * 299.99942 * 22 20 18 26 26 C 1.53006 * 109.46850 * 240.00163 * 2 1 3 27 27 C 1.53778 * 113.61205 * 157.49604 * 26 2 1 28 28 C 1.53777 * 87.08318 * 220.01860 * 27 26 2 29 29 C 1.53778 * 113.61386 * 60.00081 * 26 2 1 30 30 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47037 * 299.99621 * 1 2 3 32 32 H 1.09001 * 109.47081 * 60.00059 * 1 2 3 33 33 H 0.97003 * 119.99720 * 359.97438 * 6 4 2 34 34 H 1.09007 * 109.46798 * 66.85256 * 7 6 4 35 35 H 1.08996 * 109.47367 * 306.85416 * 7 6 4 36 36 H 1.08994 * 110.72514 * 85.79799 * 10 8 7 37 37 H 1.08995 * 110.87555 * 322.58180 * 10 8 7 38 38 H 1.09007 * 110.30907 * 263.04048 * 11 10 8 39 39 H 1.08996 * 110.39622 * 140.92350 * 11 10 8 40 40 H 1.09006 * 109.91878 * 241.87548 * 12 11 10 41 41 H 1.08998 * 110.08534 * 120.67069 * 12 11 10 42 42 H 1.09005 * 109.46745 * 303.67361 * 14 13 12 43 43 H 1.09003 * 109.46987 * 183.67669 * 14 13 12 44 44 H 0.97003 * 119.99820 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99803 * 179.97438 * 21 20 18 46 46 H 1.09003 * 112.84563 * 288.80354 * 26 2 1 47 47 H 1.09000 * 113.61970 * 334.56612 * 27 26 2 48 48 H 1.09003 * 113.61182 * 105.47296 * 27 26 2 49 49 H 1.09004 * 113.61572 * 270.88859 * 28 27 26 50 50 H 1.08996 * 113.69535 * 139.99154 * 28 27 26 51 51 H 1.09000 * 113.61427 * 254.52852 * 29 26 2 52 52 H 1.08996 * 113.61714 * 25.34763 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1955 -0.9403 3.6507 8 6 1.5499 -0.3254 4.8940 9 1 1.7555 0.7437 4.9468 10 6 2.0428 -1.0411 6.1768 11 6 0.9010 -0.7713 7.1835 12 6 -0.3335 -0.4593 6.3176 13 7 0.0864 -0.5789 4.9045 14 6 -0.6221 0.3927 4.0607 15 6 -0.2474 1.7904 4.4809 16 8 0.4304 1.9647 5.4715 17 7 -0.6656 2.8470 3.7561 18 6 -0.3251 4.1187 4.1389 19 1 0.2785 4.2739 5.0208 20 6 -0.7610 5.2083 3.3948 21 7 -1.4951 5.0194 2.3212 22 14 -0.3035 6.9414 3.9205 23 1 1.1748 7.0818 3.9299 24 1 -0.8879 7.9184 2.9670 25 1 -0.8343 7.2019 5.2827 26 6 2.0400 -0.7213 -1.2493 27 6 3.4726 -0.3276 -1.6462 28 6 2.9921 -0.3572 -3.1067 29 6 1.5811 -0.0722 -2.5657 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1494 0.5389 2.5436 34 1 3.2787 -0.8349 3.7139 35 1 1.9362 -1.9974 3.5916 36 1 2.9776 -0.6038 6.5274 37 1 2.1599 -2.1109 6.0040 38 1 1.1467 0.0834 7.8140 39 1 0.7195 -1.6534 7.7974 40 1 -0.6806 0.5545 6.5172 41 1 -1.1297 -1.1728 6.5300 42 1 -1.6976 0.2554 4.1732 43 1 -0.3434 0.2397 3.0180 44 1 -1.2075 2.7076 2.9637 45 1 -1.7997 5.7801 1.8020 46 1 1.8758 -1.7982 -1.2129 47 1 3.7639 0.6649 -1.3024 48 1 4.2151 -1.0915 -1.4153 49 1 3.0896 -1.3349 -3.5787 50 1 3.3969 0.4498 -3.7173 51 1 0.7965 -0.6299 -3.0772 52 1 1.3538 0.9897 -2.4730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:30 Heat of formation + Delta-G solvation = -68.876425 kcal Electronic energy + Delta-G solvation = -31309.053164 eV Core-core repulsion = 27308.134340 eV Total energy + Delta-G solvation = -4000.918824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.67349 -40.92052 -39.27698 -38.68799 -35.98484 -35.63596 -33.92502 -33.51487 -32.95620 -30.79558 -28.27475 -27.12515 -26.48375 -26.06610 -25.73690 -23.64064 -22.05752 -21.92115 -21.09923 -20.67043 -20.25293 -19.79165 -18.46100 -17.66985 -17.25759 -17.00006 -16.62165 -16.32639 -16.22569 -15.99584 -15.76576 -15.60786 -15.50914 -15.23112 -14.74797 -14.42838 -14.05322 -13.71924 -13.66080 -13.40828 -13.37836 -13.32263 -13.07156 -13.01589 -12.83983 -12.53189 -12.45506 -12.40925 -12.24785 -12.14667 -12.13078 -12.07728 -11.96737 -11.63673 -11.39688 -11.23241 -11.16269 -11.00366 -10.90823 -10.62436 -10.04960 -9.97370 -9.15460 -8.46518 -5.95099 1.36454 1.41785 1.50423 1.65014 1.96367 2.20932 2.27903 2.97417 3.18411 3.19843 3.54477 3.70954 3.73174 3.76941 3.80354 3.95339 4.02654 4.08341 4.23318 4.30941 4.36506 4.39990 4.42322 4.45544 4.48546 4.56309 4.61567 4.75933 4.79904 4.84536 4.87312 4.90824 4.93225 4.97461 5.05873 5.08505 5.12104 5.13338 5.16209 5.25547 5.30378 5.40845 5.41221 5.41548 5.44875 5.65818 5.87592 5.89364 6.03533 6.46129 6.56428 7.10756 7.20266 7.52261 8.05940 8.68278 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007473 B = 0.004586 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3745.683250 B = 6104.082163 C = 9039.518552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.574 6.574 6 N -0.726 5.726 7 C 0.140 3.860 8 C 0.032 3.968 9 H 0.072 0.928 10 C -0.104 4.104 11 C -0.115 4.115 12 C 0.032 3.968 13 N -0.481 5.481 14 C 0.029 3.971 15 C 0.405 3.595 16 O -0.611 6.611 17 N -0.562 5.562 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.911 5.911 22 Si 0.984 3.016 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.089 4.089 27 C -0.141 4.141 28 C -0.135 4.135 29 C -0.128 4.128 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 -10.751 -5.580 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.115 0.885 4 C 0.303 3.697 5 O -0.454 6.454 6 N -0.380 5.380 7 C 0.016 3.984 8 C -0.076 4.076 9 H 0.090 0.910 10 C -0.143 4.143 11 C -0.153 4.153 12 C -0.096 4.096 13 N -0.204 5.204 14 C -0.103 4.103 15 C 0.192 3.808 16 O -0.499 6.499 17 N -0.198 5.198 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.551 5.551 22 Si 0.808 3.192 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.201 1.201 26 C -0.108 4.108 27 C -0.179 4.179 28 C -0.172 4.172 29 C -0.165 4.165 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.536 -11.721 -5.347 13.360 hybrid contribution -0.215 2.310 0.439 2.361 sum 3.322 -9.411 -4.907 11.122 Atomic orbital electron populations 1.21759 0.91578 1.02899 1.03506 1.21420 0.98595 1.00289 0.91928 0.88457 1.21135 0.79206 0.84112 0.85215 1.90627 1.39500 1.27914 1.87368 1.46469 1.53513 1.31948 1.06029 1.21294 0.97486 0.96913 0.82712 1.23363 0.88623 1.00631 0.95014 0.91043 1.22335 0.98181 1.00924 0.92811 1.22206 0.94041 1.01529 0.97516 1.22881 0.98675 1.00436 0.87579 1.65173 1.03609 1.43167 1.08420 1.22444 1.01561 0.86716 0.99608 1.21746 0.84936 0.88183 0.85911 1.90462 1.43704 1.86398 1.29335 1.42077 1.46479 1.05257 1.25996 1.19560 1.32072 0.83219 1.11317 0.90369 1.25894 0.96075 1.03050 0.95488 1.69641 1.35373 1.33633 1.16464 0.85122 0.78492 0.77488 0.78076 1.19932 1.19643 1.20056 1.22326 0.96591 0.99549 0.92288 1.22947 0.96426 1.01043 0.97450 1.22780 0.96516 1.02459 0.95458 1.22943 0.97367 1.01344 0.94856 0.91773 0.92700 0.89574 0.76186 0.91839 0.90794 0.90790 0.89405 0.92927 0.89178 0.94442 0.89606 0.87337 0.87808 0.76985 0.91249 0.89733 0.90690 0.92742 0.89677 0.90606 0.90284 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.89 71.98 0.64 -2.42 16 2 C -0.10 -2.51 2.48 -11.54 -0.03 -2.54 16 3 H 0.10 2.42 7.94 -2.39 -0.02 2.40 16 4 C 0.52 15.77 7.15 87.66 0.63 16.40 16 5 O -0.57 -20.68 15.82 -3.04 -0.05 -20.73 16 6 N -0.73 -22.06 4.57 -463.07 -2.12 -24.18 16 7 C 0.14 4.20 5.41 86.38 0.47 4.67 16 8 C 0.03 1.01 2.18 45.26 0.10 1.11 16 9 H 0.07 2.84 5.05 -2.39 -0.01 2.82 16 10 C -0.10 -2.72 6.50 31.80 0.21 -2.52 16 11 C -0.11 -3.06 6.93 31.47 0.22 -2.85 16 12 C 0.03 0.98 6.01 86.44 0.52 1.50 16 13 N -0.48 -14.87 5.23 -862.80 -4.51 -19.38 16 14 C 0.03 0.95 5.32 85.55 0.46 1.41 16 15 C 0.41 17.12 6.34 87.65 0.56 17.67 16 16 O -0.61 -29.41 11.37 -3.06 -0.03 -29.45 16 17 N -0.56 -25.98 5.29 -306.99 -1.62 -27.61 16 18 C -0.33 -17.41 9.68 84.04 0.81 -16.59 16 19 H 0.08 4.41 7.16 -2.91 -0.02 4.39 16 20 C 0.00 -0.20 5.50 84.93 0.47 0.27 16 21 N -0.91 -45.74 13.05 21.66 0.28 -45.46 16 22 Si 0.98 40.81 29.55 68.60 2.03 42.84 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 26 C -0.09 -2.02 2.54 -10.27 -0.03 -2.04 16 27 C -0.14 -3.17 7.60 31.12 0.24 -2.94 16 28 C -0.13 -2.37 8.08 31.12 0.25 -2.12 16 29 C -0.13 -2.28 6.68 31.12 0.21 -2.07 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.27 6.64 -2.39 -0.02 1.25 16 32 H 0.09 1.62 7.45 -2.39 -0.02 1.61 16 33 H 0.40 12.53 4.93 -92.71 -0.46 12.07 16 34 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 35 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.98 8.06 -2.39 -0.02 1.96 16 38 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.04 1.40 5.79 -2.38 -0.01 1.39 16 41 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 43 H 0.10 3.08 4.36 -2.39 -0.01 3.07 16 44 H 0.40 17.45 7.90 -92.71 -0.73 16.72 16 45 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 46 H 0.08 2.14 7.86 -2.39 -0.02 2.12 16 47 H 0.07 1.70 7.96 -2.39 -0.02 1.68 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 50 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 Total: -1.00 -61.26 398.65 -0.57 -61.83 By element: Atomic # 1 Polarization: 55.45 SS G_CDS: -0.26 Total: 55.19 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.71 Total: 6.93 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -7.97 Total: -116.62 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -0.08 Total: -50.17 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -61.26 -0.57 -61.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.043 kcal (2) G-P(sol) polarization free energy of solvation -61.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds