Wall clock time and date at job start Tue Mar 31 2020 20:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46977 * 2 1 4 4 C 1.50703 * 109.47019 * 119.99193 * 2 1 3 5 5 O 1.21286 * 119.99688 * 120.00542 * 4 2 1 6 6 N 1.34771 * 120.00518 * 300.00191 * 4 2 1 7 7 C 1.46502 * 120.00287 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47080 * 185.05448 * 7 6 4 9 9 H 1.09003 * 109.88057 * 303.45515 * 8 7 6 10 10 C 1.54313 * 110.02802 * 64.56846 * 8 7 6 11 11 C 1.55138 * 103.02156 * 141.76353 * 10 8 7 12 12 C 1.54911 * 101.65354 * 324.35417 * 11 10 8 13 13 N 1.47438 * 109.88856 * 182.42503 * 8 7 6 14 14 C 1.46903 * 111.00186 * 3.68493 * 13 8 7 15 15 C 1.50700 * 109.47151 * 172.15789 * 14 13 8 16 16 O 1.21290 * 119.99991 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99598 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99990 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99581 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00326 * 179.72552 * 18 17 15 21 21 N 1.31403 * 120.00058 * 180.27808 * 20 18 17 22 22 Si 1.86801 * 119.99613 * 0.27826 * 20 18 17 23 23 H 1.48496 * 109.47419 * 90.00103 * 22 20 18 24 24 H 1.48509 * 109.46846 * 209.99881 * 22 20 18 25 25 H 1.48499 * 109.47396 * 329.99879 * 22 20 18 26 26 C 1.52997 * 109.47369 * 239.99616 * 2 1 3 27 27 C 1.53776 * 113.61435 * 159.13885 * 26 2 1 28 28 C 1.53963 * 87.01919 * 220.04685 * 27 26 2 29 29 C 1.53781 * 113.61470 * 61.52663 * 26 2 1 30 30 H 1.09000 * 109.46869 * 60.00635 * 1 2 3 31 31 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47341 * 300.00569 * 1 2 3 33 33 H 0.97002 * 119.99735 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46841 * 65.05360 * 7 6 4 35 35 H 1.08996 * 109.47153 * 305.05278 * 7 6 4 36 36 H 1.08993 * 110.71241 * 260.14870 * 10 8 7 37 37 H 1.09010 * 110.70076 * 23.38681 * 10 8 7 38 38 H 1.09001 * 110.99105 * 82.44003 * 11 10 8 39 39 H 1.09003 * 110.99531 * 206.25923 * 11 10 8 40 40 H 1.09007 * 110.36757 * 278.23642 * 12 11 10 41 41 H 1.08999 * 110.37590 * 155.89722 * 12 11 10 42 42 H 1.08996 * 109.46749 * 52.15827 * 14 13 8 43 43 H 1.08997 * 109.47290 * 292.16148 * 14 13 8 44 44 H 0.97002 * 120.00654 * 0.02562 * 17 15 14 45 45 H 0.97001 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.09001 * 112.84930 * 290.32923 * 26 2 1 47 47 H 1.09004 * 113.61656 * 334.56081 * 27 26 2 48 48 H 1.09002 * 113.61960 * 105.47034 * 27 26 2 49 49 H 1.08996 * 113.53730 * 270.81166 * 28 27 26 50 50 H 1.08999 * 113.66739 * 139.93017 * 28 27 26 51 51 H 1.08998 * 113.61451 * 254.53020 * 29 26 2 52 52 H 1.09000 * 113.61073 * 25.43656 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6963 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 2.1946 -0.9406 3.6509 8 6 1.5835 -0.2962 4.8968 9 1 1.8163 0.7685 4.9155 10 6 0.0538 -0.4991 4.9004 11 6 -0.2608 -0.7588 6.3972 12 6 0.9871 -1.5601 6.8448 13 7 2.1134 -0.9469 6.1091 14 6 3.1279 -1.9524 5.7663 15 6 3.7818 -2.4564 7.0271 16 8 3.4362 -2.0211 8.1052 17 7 4.7497 -3.3916 6.9567 18 6 5.3450 -3.8498 8.1036 19 1 5.0378 -3.4616 9.0635 20 6 6.3389 -4.8181 8.0315 21 7 6.9056 -5.2611 9.1312 22 14 6.8696 -5.4899 6.3712 23 1 7.9813 -4.6640 5.8353 24 1 7.3274 -6.8938 6.5287 25 1 5.7221 -5.4461 5.4297 26 6 2.0400 -0.7213 -1.2491 27 6 3.4867 -0.3577 -1.6229 28 6 3.0234 -0.3621 -3.0911 29 6 1.6121 -0.0511 -2.5654 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1487 0.5387 2.5436 34 1 3.2809 -0.8632 3.6974 35 1 1.9067 -1.9909 3.6067 36 1 -0.4550 0.3989 4.5498 37 1 -0.2220 -1.3615 4.2934 38 1 -0.3410 0.1786 6.9477 39 1 -1.1674 -1.3537 6.5082 40 1 0.8819 -2.6100 6.5713 41 1 1.1367 -1.4602 7.9198 42 1 3.8821 -1.5022 5.1209 43 1 2.6537 -2.7842 5.2454 44 1 5.0258 -3.7400 6.0945 45 1 7.5997 -5.9368 9.0808 46 1 1.8521 -1.7947 -1.2245 47 1 3.7963 0.6245 -1.2657 48 1 4.2081 -1.1408 -1.3894 49 1 3.1056 -1.3375 -3.5706 50 1 3.4539 0.4418 -3.6882 51 1 0.8222 -0.5871 -3.0916 52 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663503398.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:36 Heat of formation + Delta-G solvation = -46.068033 kcal Electronic energy + Delta-G solvation = -29932.092916 eV Core-core repulsion = 25932.163138 eV Total energy + Delta-G solvation = -3999.929778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64488 -39.73445 -38.46348 -37.71344 -34.80489 -33.92128 -33.30204 -32.18370 -31.54086 -29.79411 -26.89866 -26.56811 -25.63550 -25.35203 -24.07432 -23.08164 -21.32448 -20.53291 -20.00620 -19.66643 -19.18395 -18.25038 -17.26303 -16.87622 -15.97882 -15.75613 -15.63909 -15.34411 -15.20224 -14.89085 -14.71279 -14.51825 -14.14785 -13.76556 -13.37703 -13.33860 -13.05923 -12.91489 -12.84280 -12.68880 -12.52788 -12.47849 -12.15495 -12.13671 -11.94820 -11.67584 -11.57594 -11.28104 -11.11356 -11.00615 -10.96532 -10.85820 -10.67957 -10.62643 -10.54173 -10.45605 -9.93705 -9.86669 -9.51596 -9.22495 -8.55708 -8.13965 -7.98309 -6.27362 -3.78433 2.48503 2.91425 3.08254 3.12504 3.19758 3.77281 3.95194 4.14717 4.17665 4.28971 4.30504 4.41318 4.50277 4.54686 4.62287 4.71240 4.80595 4.91603 4.95107 5.02971 5.11736 5.19786 5.24656 5.30651 5.33530 5.34164 5.39425 5.44166 5.55470 5.57928 5.58206 5.61004 5.66093 5.70229 5.71866 5.72450 5.83346 5.88829 5.94831 5.97025 6.01729 6.18842 6.21120 6.25361 6.44013 7.09987 7.14746 7.28831 7.62342 8.05608 8.18187 8.64356 8.99213 9.46832 9.87788 10.85732 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.002827 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.277383 B = 9902.920739 C =12242.329803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.096 0.904 4 C 0.515 3.485 5 O -0.534 6.534 6 N -0.727 5.727 7 C 0.098 3.902 8 C 0.061 3.939 9 H 0.091 0.909 10 C -0.138 4.138 11 C -0.130 4.130 12 C 0.050 3.950 13 N -0.493 5.493 14 C 0.028 3.972 15 C 0.454 3.546 16 O -0.560 6.560 17 N -0.592 5.592 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.882 5.882 22 Si 0.877 3.123 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.089 4.089 27 C -0.134 4.134 28 C -0.144 4.144 29 C -0.136 4.136 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.525 12.966 -23.575 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.114 0.886 4 C 0.300 3.700 5 O -0.409 6.409 6 N -0.380 5.380 7 C -0.026 4.026 8 C -0.047 4.047 9 H 0.109 0.891 10 C -0.176 4.176 11 C -0.168 4.168 12 C -0.077 4.077 13 N -0.217 5.217 14 C -0.103 4.103 15 C 0.239 3.761 16 O -0.441 6.441 17 N -0.232 5.232 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.704 3.296 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.108 4.108 27 C -0.171 4.171 28 C -0.181 4.181 29 C -0.173 4.173 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.233 0.767 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.203 0.797 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.825 12.747 -22.462 29.780 hybrid contribution 0.040 -0.953 -1.667 1.920 sum -14.785 11.795 -24.129 30.658 Atomic orbital electron populations 1.21748 0.92868 1.02841 1.02561 1.21366 0.97435 1.00499 0.92945 0.88593 1.20674 0.80115 0.84699 0.84470 1.90726 1.37333 1.26157 1.86728 1.45984 1.54123 1.32188 1.05660 1.22191 0.99747 0.97060 0.83602 1.22749 0.93685 1.00094 0.88222 0.89101 1.22883 0.95154 1.01911 0.97691 1.22740 0.98056 1.01030 0.95006 1.23113 0.87671 0.95828 1.01126 1.63494 1.11446 1.29434 1.17288 1.22263 0.96143 0.94520 0.97405 1.19603 0.83369 0.83050 0.90081 1.90541 1.64599 1.59413 1.29576 1.42213 1.34980 1.37372 1.08601 1.19416 1.16353 1.19854 0.87539 0.86277 1.25022 0.96781 0.96980 0.97338 1.69618 1.26061 1.29856 1.26709 0.86704 0.79504 0.79699 0.83723 1.19554 1.20182 1.19459 1.22361 0.96433 1.00317 0.91643 1.22942 0.96692 1.01836 0.95673 1.22839 0.96715 1.01840 0.96714 1.22961 0.97193 1.00739 0.96423 0.91282 0.92043 0.92196 0.76721 0.90513 0.91005 0.90917 0.91328 0.90579 0.90967 0.93947 0.88337 0.88745 0.92918 0.79704 0.91658 0.88494 0.90464 0.91058 0.90248 0.91550 0.91489 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.91 37.16 0.33 -0.42 16 2 C -0.10 -0.72 2.45 -91.77 -0.23 -0.95 16 3 H 0.10 0.55 7.98 -51.93 -0.41 0.14 16 4 C 0.51 5.45 7.13 -10.99 -0.08 5.37 16 5 O -0.53 -8.03 15.82 5.55 0.09 -7.94 16 6 N -0.73 -6.48 5.22 -60.29 -0.31 -6.80 16 7 C 0.10 1.12 3.76 -4.04 -0.02 1.10 16 8 C 0.06 0.69 3.50 -66.73 -0.23 0.46 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 10 C -0.14 -1.27 6.10 -24.91 -0.15 -1.42 16 11 C -0.13 -1.41 7.08 -24.59 -0.17 -1.59 16 12 C 0.05 0.76 5.66 -2.30 -0.01 0.75 16 13 N -0.49 -7.72 4.90 -224.78 -1.10 -8.82 16 14 C 0.03 0.49 4.17 -4.97 -0.02 0.47 16 15 C 0.45 10.52 7.56 -10.99 -0.08 10.43 16 16 O -0.56 -15.02 14.44 5.55 0.08 -14.94 16 17 N -0.59 -14.53 5.09 -10.96 -0.06 -14.59 16 18 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 19 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 21 N -0.88 -26.20 13.96 55.50 0.77 -25.42 16 22 Si 0.88 20.08 27.74 -169.99 -4.72 15.37 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -5.72 6.51 56.52 0.37 -5.35 16 26 C -0.09 -0.71 2.51 -89.81 -0.23 -0.94 16 27 C -0.13 -1.13 7.54 -25.83 -0.19 -1.32 16 28 C -0.14 -0.97 8.09 -25.82 -0.21 -1.18 16 29 C -0.14 -0.82 6.75 -25.92 -0.17 -0.99 16 30 H 0.07 0.29 7.50 -51.93 -0.39 -0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.24 7.56 -51.93 -0.39 -0.15 16 33 H 0.40 2.40 7.75 -40.82 -0.32 2.08 16 34 H 0.08 0.99 6.23 -51.93 -0.32 0.67 16 35 H 0.07 0.93 7.02 -51.93 -0.36 0.57 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.65 7.82 -51.92 -0.41 0.24 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.66 7.66 -51.92 -0.40 0.27 16 41 H 0.10 1.78 7.27 -51.93 -0.38 1.40 16 42 H 0.09 1.49 6.13 -51.93 -0.32 1.17 16 43 H 0.05 0.85 6.85 -51.93 -0.36 0.49 16 44 H 0.37 8.15 5.76 -40.82 -0.24 7.91 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.10 0.95 7.91 -51.93 -0.41 0.54 16 47 H 0.08 0.60 7.99 -51.93 -0.41 0.19 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -34.64 403.26 -9.78 -44.42 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.90 Total: 10.67 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.72 Total: 1.97 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.70 Total: -55.62 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.72 Total: 15.37 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.64 -9.78 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503398.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.648 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds