Wall clock time and date at job start Tue Mar 31 2020 20:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46977 * 2 1 4 4 C 1.50703 * 109.47019 * 119.99193 * 2 1 3 5 5 O 1.21286 * 119.99688 * 120.00542 * 4 2 1 6 6 N 1.34771 * 120.00518 * 300.00191 * 4 2 1 7 7 C 1.46502 * 120.00287 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47080 * 185.05448 * 7 6 4 9 9 H 1.09003 * 109.88057 * 303.45515 * 8 7 6 10 10 C 1.54313 * 110.02802 * 64.56846 * 8 7 6 11 11 C 1.55138 * 103.02156 * 141.76353 * 10 8 7 12 12 C 1.54911 * 101.65354 * 324.35417 * 11 10 8 13 13 N 1.47438 * 109.88856 * 182.42503 * 8 7 6 14 14 C 1.46903 * 111.00186 * 3.68493 * 13 8 7 15 15 C 1.50700 * 109.47151 * 172.15789 * 14 13 8 16 16 O 1.21290 * 119.99991 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99598 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99990 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99581 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00326 * 179.72552 * 18 17 15 21 21 N 1.31403 * 120.00058 * 180.27808 * 20 18 17 22 22 Si 1.86801 * 119.99613 * 0.27826 * 20 18 17 23 23 H 1.48496 * 109.47419 * 90.00103 * 22 20 18 24 24 H 1.48509 * 109.46846 * 209.99881 * 22 20 18 25 25 H 1.48499 * 109.47396 * 329.99879 * 22 20 18 26 26 C 1.52997 * 109.47369 * 239.99616 * 2 1 3 27 27 C 1.53776 * 113.61435 * 159.13885 * 26 2 1 28 28 C 1.53963 * 87.01919 * 220.04685 * 27 26 2 29 29 C 1.53781 * 113.61470 * 61.52663 * 26 2 1 30 30 H 1.09000 * 109.46869 * 60.00635 * 1 2 3 31 31 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47341 * 300.00569 * 1 2 3 33 33 H 0.97002 * 119.99735 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46841 * 65.05360 * 7 6 4 35 35 H 1.08996 * 109.47153 * 305.05278 * 7 6 4 36 36 H 1.08993 * 110.71241 * 260.14870 * 10 8 7 37 37 H 1.09010 * 110.70076 * 23.38681 * 10 8 7 38 38 H 1.09001 * 110.99105 * 82.44003 * 11 10 8 39 39 H 1.09003 * 110.99531 * 206.25923 * 11 10 8 40 40 H 1.09007 * 110.36757 * 278.23642 * 12 11 10 41 41 H 1.08999 * 110.37590 * 155.89722 * 12 11 10 42 42 H 1.08996 * 109.46749 * 52.15827 * 14 13 8 43 43 H 1.08997 * 109.47290 * 292.16148 * 14 13 8 44 44 H 0.97002 * 120.00654 * 0.02562 * 17 15 14 45 45 H 0.97001 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.09001 * 112.84930 * 290.32923 * 26 2 1 47 47 H 1.09004 * 113.61656 * 334.56081 * 27 26 2 48 48 H 1.09002 * 113.61960 * 105.47034 * 27 26 2 49 49 H 1.08996 * 113.53730 * 270.81166 * 28 27 26 50 50 H 1.08999 * 113.66739 * 139.93017 * 28 27 26 51 51 H 1.08998 * 113.61451 * 254.53020 * 29 26 2 52 52 H 1.09000 * 113.61073 * 25.43656 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6963 1.1194 6 7 1.7067 -0.2497 2.4546 7 6 2.1946 -0.9406 3.6509 8 6 1.5835 -0.2962 4.8968 9 1 1.8163 0.7685 4.9155 10 6 0.0538 -0.4991 4.9004 11 6 -0.2608 -0.7588 6.3972 12 6 0.9871 -1.5601 6.8448 13 7 2.1134 -0.9469 6.1091 14 6 3.1279 -1.9524 5.7663 15 6 3.7818 -2.4564 7.0271 16 8 3.4362 -2.0211 8.1052 17 7 4.7497 -3.3916 6.9567 18 6 5.3450 -3.8498 8.1036 19 1 5.0378 -3.4616 9.0635 20 6 6.3389 -4.8181 8.0315 21 7 6.9056 -5.2611 9.1312 22 14 6.8696 -5.4899 6.3712 23 1 7.9813 -4.6640 5.8353 24 1 7.3274 -6.8938 6.5287 25 1 5.7221 -5.4461 5.4297 26 6 2.0400 -0.7213 -1.2491 27 6 3.4867 -0.3577 -1.6229 28 6 3.0234 -0.3621 -3.0911 29 6 1.6121 -0.0511 -2.5654 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1487 0.5387 2.5436 34 1 3.2809 -0.8632 3.6974 35 1 1.9067 -1.9909 3.6067 36 1 -0.4550 0.3989 4.5498 37 1 -0.2220 -1.3615 4.2934 38 1 -0.3410 0.1786 6.9477 39 1 -1.1674 -1.3537 6.5082 40 1 0.8819 -2.6100 6.5713 41 1 1.1367 -1.4602 7.9198 42 1 3.8821 -1.5022 5.1209 43 1 2.6537 -2.7842 5.2454 44 1 5.0258 -3.7400 6.0945 45 1 7.5997 -5.9368 9.0808 46 1 1.8521 -1.7947 -1.2245 47 1 3.7963 0.6245 -1.2657 48 1 4.2081 -1.1408 -1.3894 49 1 3.1056 -1.3375 -3.5706 50 1 3.4539 0.4418 -3.6882 51 1 0.8222 -0.5871 -3.0916 52 1 1.4082 1.0151 -2.4663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663503398.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:35 Heat of formation + Delta-G solvation = -72.485840 kcal Electronic energy + Delta-G solvation = -29933.238478 eV Core-core repulsion = 25932.163138 eV Total energy + Delta-G solvation = -4001.075340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.51548 -40.85146 -39.61610 -38.98593 -36.07472 -35.64251 -33.92188 -33.80505 -33.20844 -30.72970 -28.49735 -27.08631 -26.36133 -26.03006 -25.92642 -23.76584 -22.38319 -21.59492 -21.15398 -20.82512 -20.27633 -19.96137 -18.20347 -18.06021 -17.17750 -16.88395 -16.72255 -16.44300 -16.19861 -16.11505 -16.02273 -15.53953 -15.22299 -14.96818 -14.76593 -14.59463 -14.32193 -14.12749 -13.86096 -13.55607 -13.43741 -13.34737 -13.33396 -13.04977 -13.01178 -12.79906 -12.47066 -12.46793 -12.29292 -12.10702 -12.02468 -12.00622 -11.91820 -11.60002 -11.53077 -11.38700 -11.23719 -10.99323 -10.67145 -10.43586 -10.27345 -10.06957 -9.27615 -8.44678 -6.04605 1.26867 1.30521 1.38785 1.69767 1.90706 2.13289 2.18196 2.62623 3.09806 3.19040 3.52258 3.60281 3.72528 3.74436 3.76952 3.78679 3.99881 4.05201 4.10837 4.20172 4.20961 4.27635 4.33561 4.35082 4.45026 4.51497 4.54861 4.57512 4.77346 4.87589 4.88105 4.91088 4.94696 4.99599 5.03874 5.06169 5.08064 5.11759 5.18538 5.21498 5.31960 5.37050 5.42753 5.43229 5.49212 5.65737 5.84158 5.93343 6.06611 6.56133 6.59555 6.84863 7.31460 7.35910 7.92172 8.72866 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.002827 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.277383 B = 9902.920739 C =12242.329803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.119 0.881 4 C 0.510 3.490 5 O -0.585 6.585 6 N -0.710 5.710 7 C 0.105 3.895 8 C 0.067 3.933 9 H 0.108 0.892 10 C -0.126 4.126 11 C -0.120 4.120 12 C 0.044 3.956 13 N -0.515 5.515 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.602 6.602 17 N -0.595 5.595 18 C -0.325 4.325 19 H 0.059 0.941 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.240 1.240 26 C -0.095 4.095 27 C -0.143 4.143 28 C -0.143 4.143 29 C -0.121 4.121 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.417 0.583 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.031 0.969 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.387 0.613 45 H 0.280 0.720 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 14.935 -27.706 36.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.137 0.863 4 C 0.298 3.702 5 O -0.464 6.464 6 N -0.364 5.364 7 C -0.020 4.020 8 C -0.041 4.041 9 H 0.125 0.875 10 C -0.164 4.164 11 C -0.158 4.158 12 C -0.083 4.083 13 N -0.240 5.240 14 C -0.087 4.087 15 C 0.239 3.761 16 O -0.486 6.486 17 N -0.236 5.236 18 C -0.454 4.454 19 H 0.077 0.923 20 C -0.210 4.210 21 N -0.572 5.572 22 Si 0.779 3.221 23 H -0.181 1.181 24 H -0.196 1.196 25 H -0.164 1.164 26 C -0.113 4.113 27 C -0.180 4.180 28 C -0.181 4.181 29 C -0.158 4.158 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.075 0.925 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.222 0.778 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.092 0.908 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.865 14.767 -26.606 34.791 hybrid contribution 0.640 -1.504 -0.244 1.653 sum -16.225 13.262 -26.850 34.060 Atomic orbital electron populations 1.21769 0.90960 1.02536 1.04419 1.21398 0.98827 1.00781 0.90404 0.86277 1.21372 0.79158 0.84096 0.85624 1.90710 1.39717 1.28570 1.87441 1.45793 1.53751 1.32352 1.04475 1.21929 0.98856 0.96574 0.84640 1.22820 0.95162 1.00132 0.86018 0.87453 1.22874 0.93377 1.03836 0.96296 1.22693 0.96229 1.00648 0.96201 1.23035 0.90078 0.96233 0.98968 1.63393 1.11719 1.28897 1.19968 1.22114 0.97020 0.95757 0.93814 1.20810 0.82111 0.81469 0.91697 1.90524 1.65521 1.60411 1.32106 1.42081 1.35508 1.38107 1.07944 1.18999 1.18079 1.21304 0.87038 0.92296 1.26007 0.95948 0.96512 1.02529 1.69783 1.26821 1.30649 1.29951 0.85457 0.80094 0.78830 0.77757 1.18129 1.19563 1.16393 1.22327 0.96338 0.99260 0.93423 1.22999 0.96476 1.01254 0.97283 1.22846 0.97455 1.02045 0.95711 1.22922 0.96665 1.01697 0.94523 0.89483 0.93434 0.90325 0.74537 0.92118 0.92561 0.87109 0.91072 0.90025 0.89329 0.95033 0.92464 0.86711 0.91168 0.77843 0.91088 0.91127 0.89638 0.93926 0.90819 0.90439 0.90791 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.91 71.98 0.64 -0.28 16 2 C -0.09 -1.05 2.45 -11.54 -0.03 -1.08 16 3 H 0.12 0.85 7.98 -2.39 -0.02 0.83 16 4 C 0.51 9.76 7.13 87.66 0.62 10.39 16 5 O -0.58 -17.37 15.82 -3.05 -0.05 -17.42 16 6 N -0.71 -10.43 5.22 -463.06 -2.42 -12.85 16 7 C 0.11 2.16 3.76 86.38 0.32 2.48 16 8 C 0.07 1.31 3.50 45.26 0.16 1.47 16 9 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 10 C -0.13 -1.81 6.10 31.77 0.19 -1.61 16 11 C -0.12 -2.31 7.08 31.98 0.23 -2.09 16 12 C 0.04 1.36 5.66 86.77 0.49 1.85 16 13 N -0.52 -15.76 4.90 -865.08 -4.24 -20.00 16 14 C 0.04 1.51 4.17 85.56 0.36 1.87 16 15 C 0.45 21.61 7.56 87.66 0.66 22.27 16 16 O -0.60 -34.24 14.44 -3.06 -0.04 -34.29 16 17 N -0.59 -29.84 5.09 -306.98 -1.56 -31.40 16 18 C -0.33 -19.70 10.16 84.04 0.85 -18.85 16 19 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.93 -57.43 13.96 21.66 0.30 -57.13 16 22 Si 0.96 41.25 27.74 68.60 1.90 43.16 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.24 -9.14 6.51 99.48 0.65 -8.49 16 26 C -0.09 -1.37 2.51 -10.27 -0.03 -1.39 16 27 C -0.14 -2.28 7.54 31.18 0.24 -2.04 16 28 C -0.14 -1.70 8.09 31.18 0.25 -1.45 16 29 C -0.12 -1.10 6.75 31.12 0.21 -0.89 16 30 H 0.09 0.31 7.50 -2.39 -0.02 0.29 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.24 7.56 -2.38 -0.02 0.22 16 33 H 0.42 3.06 7.75 -92.71 -0.72 2.35 16 34 H 0.06 1.46 6.23 -2.39 -0.01 1.45 16 35 H 0.06 1.36 7.02 -2.39 -0.02 1.34 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.05 7.82 -2.38 -0.02 1.03 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.03 1.01 7.66 -2.38 -0.02 0.99 16 41 H 0.06 2.20 7.27 -2.39 -0.02 2.18 16 42 H 0.12 3.48 6.13 -2.39 -0.01 3.47 16 43 H 0.07 2.18 6.85 -2.39 -0.02 2.16 16 44 H 0.39 16.67 5.76 -92.71 -0.53 16.14 16 45 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.07 1.39 7.91 -2.39 -0.02 1.37 16 47 H 0.09 1.19 7.99 -2.38 -0.02 1.17 16 48 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.10 0.55 8.10 -2.39 -0.02 0.54 16 Total: -1.00 -83.82 403.26 -0.85 -84.67 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.39 Total: 34.78 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.64 Total: 10.48 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -7.92 Total: -121.38 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -0.09 Total: -51.70 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.90 Total: 43.16 kcal Total: -83.82 -0.85 -84.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663503398.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.187 kcal (2) G-P(sol) polarization free energy of solvation -83.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds