Wall clock time and date at job start Tue Mar 31 2020 20:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.50703 * 109.46946 * 119.99872 * 2 1 3 5 5 O 1.21278 * 119.99985 * 120.00236 * 4 2 1 6 6 N 1.34779 * 119.99944 * 299.99948 * 4 2 1 7 7 C 1.46499 * 119.99872 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 4 9 9 H 1.08996 * 112.74267 * 284.22495 * 8 7 6 10 10 C 1.53510 * 113.47510 * 153.38308 * 8 7 6 11 11 C 1.53511 * 83.57342 * 219.20659 * 10 8 7 12 12 N 1.47474 * 113.47795 * 54.99834 * 8 7 6 13 13 C 1.46906 * 110.99953 * 253.46559 * 12 8 7 14 14 C 1.50693 * 109.47115 * 189.99828 * 13 12 8 15 15 O 1.21294 * 120.00513 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99990 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00274 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00153 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00326 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00273 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00107 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47215 * 89.99611 * 21 19 17 23 23 H 1.48497 * 109.47398 * 210.00048 * 21 19 17 24 24 H 1.48509 * 109.46632 * 329.99668 * 21 19 17 25 25 C 1.52997 * 109.46975 * 239.99628 * 2 1 3 26 26 C 1.54272 * 110.03163 * 177.91027 * 25 2 1 27 27 C 1.54967 * 104.15996 * 217.13851 * 26 25 2 28 28 C 1.54886 * 102.77673 * 37.88451 * 27 26 25 29 29 C 1.53880 * 110.03211 * 60.69365 * 25 2 1 30 30 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 31 31 H 1.09004 * 109.47368 * 60.00155 * 1 2 3 32 32 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99708 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.47391 * 59.99686 * 7 6 4 35 35 H 1.09001 * 109.46813 * 299.99742 * 7 6 4 36 36 H 1.09007 * 114.16858 * 332.84568 * 10 8 7 37 37 H 1.08999 * 114.17748 * 105.56041 * 10 8 7 38 38 H 1.09009 * 113.47520 * 271.25367 * 11 10 8 39 39 H 1.08996 * 113.53402 * 140.79730 * 11 10 8 40 40 H 1.09000 * 109.47364 * 310.00511 * 13 12 8 41 41 H 1.09001 * 109.46397 * 70.00275 * 13 12 8 42 42 H 0.97002 * 119.99953 * 0.02562 * 16 14 13 43 43 H 0.96995 * 120.00303 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.02110 * 299.29809 * 25 2 1 45 45 H 1.09000 * 110.48548 * 335.78217 * 26 25 2 46 46 H 1.08996 * 110.48357 * 98.43080 * 26 25 2 47 47 H 1.08996 * 110.71622 * 279.57656 * 27 26 25 48 48 H 1.08993 * 110.92191 * 156.29515 * 27 26 25 49 49 H 1.09005 * 110.48958 * 203.40526 * 28 27 26 50 50 H 1.09004 * 110.48745 * 80.76318 * 28 27 26 51 51 H 1.08996 * 110.03212 * 238.56470 * 29 25 2 52 52 H 1.09002 * 110.03055 * 359.97438 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6508 8 6 1.6847 -0.2193 4.9000 9 1 2.2227 0.7070 5.1015 10 6 1.5598 -1.1345 6.1260 11 6 0.2781 -0.3292 6.3815 12 7 0.2183 -0.0658 4.9316 13 6 -0.1713 1.3253 4.6649 14 6 -1.6420 1.4974 4.9448 15 8 -2.3008 0.5543 5.3292 16 7 -2.2254 2.6995 4.7681 17 6 -3.5632 2.8563 5.0232 18 1 -4.1496 2.0167 5.3663 19 6 -4.1646 4.0956 4.8415 20 7 -5.4471 4.2459 5.0856 21 14 -3.1503 5.5481 4.2489 22 1 -3.1746 5.5962 2.7649 23 1 -3.7210 6.8058 4.7943 24 1 -1.7489 5.3968 4.7165 25 6 2.0399 -0.7213 -1.2492 26 6 3.5816 -0.6833 -1.2890 27 6 3.9178 -0.5062 -2.7914 28 6 2.8086 0.4584 -3.2792 29 6 1.5484 0.0040 -2.5142 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.1493 0.5390 2.5435 34 1 3.2854 -0.9398 3.6507 35 1 1.8324 -1.9679 3.6509 36 1 1.3871 -2.1833 5.8843 37 1 2.3372 -0.9856 6.8754 38 1 0.4406 0.5676 6.9794 39 1 -0.5509 -0.9350 6.7472 40 1 0.4017 1.9929 5.3083 41 1 0.0303 1.5651 3.6209 42 1 -1.6987 3.4537 4.4603 43 1 -5.8668 5.1111 4.9592 44 1 1.6918 -1.7542 -1.2519 45 1 3.9574 0.1617 -0.7120 46 1 3.9961 -1.6183 -0.9122 47 1 3.8577 -1.4603 -3.3150 48 1 4.9032 -0.0583 -2.9195 49 1 2.6598 0.3563 -4.3542 50 1 3.0591 1.4881 -3.0239 51 1 0.9625 -0.6772 -3.1313 52 1 0.9462 0.8696 -2.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670706628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:09 Heat of formation + Delta-G solvation = -50.815017 kcal Electronic energy + Delta-G solvation = -30143.026627 eV Core-core repulsion = 26142.891004 eV Total energy + Delta-G solvation = -4000.135623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71281 -39.98869 -38.10858 -37.82814 -34.58947 -34.02164 -33.46458 -31.79683 -30.92397 -28.93315 -28.61204 -27.47674 -26.01370 -24.40719 -23.63611 -22.82722 -20.78368 -20.60388 -19.84598 -19.46612 -19.34727 -18.42662 -17.54055 -16.39127 -16.23881 -15.85695 -15.65942 -15.28688 -15.11050 -14.98011 -14.80693 -14.19114 -13.95227 -13.75359 -13.51365 -13.34788 -13.33598 -13.03231 -12.78791 -12.58357 -12.36778 -12.27874 -11.97387 -11.72066 -11.61916 -11.51800 -11.33183 -11.24156 -11.17489 -11.09510 -10.93667 -10.82049 -10.70991 -10.66461 -10.59966 -10.51937 -10.03190 -9.65450 -9.62466 -9.05455 -8.90651 -8.45617 -8.24192 -6.36569 -3.88398 2.65309 2.95904 3.00732 3.09713 3.10682 3.63451 3.87200 4.04350 4.29881 4.36140 4.43449 4.49706 4.61827 4.72387 4.75455 4.90316 4.92389 4.99894 5.11876 5.20021 5.27296 5.28310 5.28916 5.33392 5.44251 5.46358 5.46809 5.48805 5.57226 5.60227 5.63784 5.70100 5.73226 5.76006 5.79226 5.84000 5.87535 5.95072 5.99163 6.07011 6.13046 6.13459 6.19436 6.33331 6.35355 6.49212 7.03604 7.47759 7.51461 8.07604 8.22108 8.53301 8.89135 9.35724 9.75606 10.76488 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009776 B = 0.003093 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.524451 B = 9050.712269 C =11262.392797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 H 0.094 0.906 4 C 0.517 3.483 5 O -0.542 6.542 6 N -0.723 5.723 7 C 0.141 3.859 8 C 0.003 3.997 9 H 0.082 0.918 10 C -0.135 4.135 11 C 0.012 3.988 12 N -0.435 5.435 13 C 0.005 3.995 14 C 0.452 3.548 15 O -0.557 6.557 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.270 1.270 25 C -0.070 4.070 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.125 4.125 29 C -0.124 4.124 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.369 0.631 43 H 0.274 0.726 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.064 0.936 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.156 -4.814 -10.212 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.112 0.888 4 C 0.304 3.696 5 O -0.419 6.419 6 N -0.375 5.375 7 C 0.017 3.983 8 C -0.107 4.107 9 H 0.099 0.901 10 C -0.173 4.173 11 C -0.117 4.117 12 N -0.158 5.158 13 C -0.127 4.127 14 C 0.237 3.763 15 O -0.438 6.438 16 N -0.230 5.230 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.196 1.196 25 C -0.089 4.089 26 C -0.148 4.148 27 C -0.166 4.166 28 C -0.163 4.163 29 C -0.161 4.161 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.540 -6.401 -10.462 23.071 hybrid contribution 0.706 2.530 0.131 2.630 sum 20.247 -3.872 -10.331 23.057 Atomic orbital electron populations 1.21863 0.92510 1.03188 1.03047 1.21484 0.97714 1.00460 0.92975 0.88789 1.20642 0.79832 0.84587 0.84568 1.90661 1.38126 1.26289 1.86844 1.46002 1.53615 1.32306 1.05558 1.21293 0.98086 0.96693 0.82206 1.23817 0.91863 0.99414 0.95578 0.90053 1.23193 0.98175 0.99732 0.96238 1.23610 0.98232 0.99617 0.90216 1.68893 1.10004 1.20666 1.16224 1.22583 0.97060 0.91452 1.01631 1.19480 0.88003 0.83885 0.84894 1.90582 1.64422 1.39444 1.49350 1.42211 1.10311 1.09282 1.61183 1.19415 0.82568 0.98689 1.42692 0.86282 1.25038 0.95746 0.97623 0.97699 1.69617 1.09606 1.25026 1.47724 0.86685 0.79929 0.83087 0.79740 1.19545 1.20138 1.19610 1.21565 0.95771 0.99517 0.92056 1.22383 0.94787 1.02291 0.95376 1.22549 0.98185 0.99321 0.96511 1.22364 0.95240 0.99224 0.99433 1.22290 0.97632 1.00237 0.95948 0.91808 0.91117 0.91864 0.76536 0.91408 0.90822 0.88555 0.90458 0.91523 0.88712 0.92400 0.89861 0.79801 0.91556 0.90395 0.92326 0.90674 0.91697 0.91940 0.91957 0.91815 0.91704 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.84 37.16 0.33 -1.18 16 2 C -0.11 -1.06 2.01 -91.77 -0.18 -1.24 16 3 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 4 C 0.52 6.45 6.90 -10.98 -0.08 6.37 16 5 O -0.54 -8.27 14.50 5.56 0.08 -8.19 16 6 N -0.72 -8.36 5.36 -60.29 -0.32 -8.68 16 7 C 0.14 1.59 5.82 -4.04 -0.02 1.56 16 8 C 0.00 0.04 3.25 -71.45 -0.23 -0.20 16 9 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 10 C -0.14 -1.37 8.00 -26.20 -0.21 -1.58 16 11 C 0.01 0.16 6.71 -7.56 -0.05 0.11 16 12 N -0.44 -6.36 5.63 -237.98 -1.34 -7.70 16 13 C 0.01 0.08 5.07 -4.98 -0.03 0.05 16 14 C 0.45 9.81 7.62 -10.99 -0.08 9.72 16 15 O -0.56 -14.51 15.34 5.55 0.09 -14.43 16 16 N -0.59 -13.49 5.09 -10.97 -0.06 -13.55 16 17 C -0.30 -8.41 10.16 -14.94 -0.15 -8.56 16 18 H 0.12 3.78 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.26 13.96 55.50 0.77 -24.49 16 21 Si 0.88 18.76 27.74 -169.99 -4.71 14.05 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 25 C -0.07 -0.69 2.11 -89.50 -0.19 -0.88 16 26 C -0.11 -1.10 5.15 -25.03 -0.13 -1.23 16 27 C -0.13 -1.05 6.91 -24.70 -0.17 -1.22 16 28 C -0.13 -0.96 6.83 -25.07 -0.17 -1.13 16 29 C -0.12 -1.02 5.92 -25.61 -0.15 -1.17 16 30 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 31 H 0.07 0.62 6.52 -51.93 -0.34 0.28 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.40 4.35 5.64 -40.82 -0.23 4.12 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.94 7.87 -51.93 -0.41 0.53 16 36 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.88 7.70 -51.92 -0.40 0.48 16 39 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 40 H 0.06 0.76 7.56 -51.93 -0.39 0.37 16 41 H 0.08 1.08 6.33 -51.93 -0.33 0.75 16 42 H 0.37 7.35 5.76 -40.82 -0.24 7.11 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 45 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 46 H 0.07 0.87 7.43 -51.93 -0.39 0.49 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 52 H 0.07 0.54 6.38 -51.93 -0.33 0.21 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -33.12 402.61 -9.91 -43.03 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -8.87 Total: 13.42 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.62 Total: 0.47 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.94 Total: -54.42 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.17 Total: -22.62 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.12 -9.91 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670706628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.783 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds