Wall clock time and date at job start Tue Mar 31 2020 20:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47151 * 239.99791 * 2 1 3 5 5 O 1.21279 * 120.00172 * 240.00256 * 4 2 1 6 6 N 1.34777 * 119.99727 * 60.00254 * 4 2 1 7 7 C 1.46501 * 119.99604 * 180.02562 * 6 4 2 8 8 C 1.52998 * 110.29135 * 59.29963 * 7 6 4 9 9 C 1.54267 * 110.32240 * 297.16946 * 7 6 4 10 10 C 1.54373 * 105.06051 * 241.10506 * 9 7 6 11 11 N 1.48558 * 104.59870 * 23.85517 * 10 9 7 12 12 C 1.46899 * 111.00432 * 200.96137 * 11 10 9 13 13 C 1.50707 * 109.47004 * 176.48695 * 12 11 10 14 14 O 1.21287 * 120.00061 * 6.05462 * 13 12 11 15 15 N 1.34779 * 119.99648 * 186.05408 * 13 12 11 16 16 C 1.37096 * 119.99996 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00187 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99964 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47269 * 59.99978 * 20 18 16 22 22 H 1.48505 * 109.47065 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47258 * 300.00048 * 20 18 16 24 24 C 1.48825 * 104.23492 * 320.49167 * 11 10 9 25 25 C 1.53005 * 109.46773 * 120.00187 * 2 1 3 26 26 C 1.53783 * 113.61148 * 277.49497 * 25 2 1 27 27 C 1.53786 * 87.08073 * 220.02263 * 26 25 2 28 28 C 1.53781 * 113.61080 * 180.02562 * 25 2 1 29 29 H 1.08999 * 109.47084 * 300.00362 * 1 2 3 30 30 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46777 * 60.00133 * 1 2 3 32 32 H 0.96993 * 120.00548 * 0.02562 * 6 4 2 33 33 H 1.08998 * 109.47021 * 60.69811 * 8 7 6 34 34 H 1.08997 * 109.47226 * 180.69919 * 8 7 6 35 35 H 1.09002 * 109.47064 * 300.69910 * 8 7 6 36 36 H 1.08993 * 110.32115 * 0.02562 * 9 7 6 37 37 H 1.09005 * 110.32058 * 122.11217 * 9 7 6 38 38 H 1.08999 * 110.41438 * 142.63545 * 10 9 7 39 39 H 1.09006 * 110.41670 * 265.07728 * 10 9 7 40 40 H 1.09002 * 109.46910 * 296.48384 * 12 11 10 41 41 H 1.08994 * 109.47327 * 56.48342 * 12 11 10 42 42 H 0.97004 * 119.99954 * 359.97438 * 15 13 12 43 43 H 0.96995 * 119.99640 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.45451 * 280.77439 * 24 11 10 45 45 H 1.09004 * 110.49627 * 158.24573 * 24 11 10 46 46 H 1.08996 * 112.85170 * 48.80148 * 25 2 1 47 47 H 1.09005 * 113.61457 * 334.56488 * 26 25 2 48 48 H 1.09001 * 113.61639 * 105.47273 * 26 25 2 49 49 H 1.09000 * 113.60878 * 270.88584 * 27 26 25 50 50 H 1.08993 * 113.61569 * 139.98391 * 27 26 25 51 51 H 1.09003 * 113.61112 * 254.52338 * 28 25 2 52 52 H 1.08995 * 113.61674 * 25.43177 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9410 -3.6507 8 6 1.7088 -2.3917 -3.6606 9 6 3.7355 -0.8915 -3.7069 10 6 4.0652 -0.1315 -5.0095 11 7 2.8552 0.6862 -5.2823 12 6 2.7910 1.0757 -6.6973 13 6 1.5107 1.8283 -6.9535 14 8 0.7814 2.1170 -6.0284 15 7 1.1762 2.1804 -8.2108 16 6 0.0112 2.8646 -8.4440 17 1 -0.6386 3.1209 -7.6204 18 6 -0.3340 3.2271 -9.7402 19 7 0.4565 2.9147 -10.7425 20 14 -1.9216 4.1587 -10.0580 21 1 -1.8959 5.4469 -9.3199 22 1 -2.0566 4.4248 -11.5128 23 1 -3.0742 3.3453 -9.5940 24 6 1.7208 -0.2080 -4.9241 25 6 2.0399 -0.7213 1.2493 26 6 2.0719 0.1675 2.5038 27 6 3.4107 -0.5053 2.8504 28 6 3.5737 -0.7763 1.3458 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.1495 0.5389 -2.5436 33 1 0.6190 -2.4098 -3.6712 34 1 2.0892 -2.8962 -4.5488 35 1 2.0720 -2.9026 -2.7689 36 1 4.1287 -0.3536 -2.8444 37 1 4.1456 -1.9009 -3.7417 38 1 4.9337 0.5112 -4.8653 39 1 4.2416 -0.8330 -5.8249 40 1 3.6417 1.7136 -6.9375 41 1 2.8188 0.1828 -7.3216 42 1 1.7596 1.9498 -8.9506 43 1 0.2156 3.1682 -11.6472 44 1 1.5310 -0.9222 -5.7253 45 1 0.8251 0.3769 -4.7150 46 1 1.5572 -1.6856 1.4079 47 1 2.1621 1.2312 2.2832 48 1 1.2757 -0.0523 3.2151 49 1 3.3025 -1.4103 3.4482 50 1 4.1539 0.1828 3.2529 51 1 3.9903 -1.7584 1.1220 52 1 4.0742 0.0293 0.8088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671648528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:01 Heat of formation + Delta-G solvation = -74.139116 kcal Electronic energy + Delta-G solvation = -30317.759508 eV Core-core repulsion = 26316.612477 eV Total energy + Delta-G solvation = -4001.147031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67101 -40.56491 -39.63357 -38.53437 -36.02365 -35.44687 -34.20437 -33.25878 -32.07420 -30.56111 -28.80969 -27.02430 -26.87806 -26.20442 -25.54365 -24.25310 -22.51712 -21.45338 -20.95895 -20.31523 -20.23155 -19.84945 -18.07846 -17.84244 -17.19573 -16.72177 -16.45356 -16.39926 -16.20263 -15.95380 -15.73498 -15.46168 -15.19619 -14.84119 -14.63532 -14.12957 -13.85429 -13.81543 -13.56532 -13.50231 -13.31437 -13.29955 -13.19146 -13.03227 -12.99829 -12.94320 -12.60728 -12.49453 -12.41874 -12.31398 -12.15498 -12.11561 -11.87000 -11.79064 -11.44409 -11.39997 -11.22275 -10.94253 -10.33825 -10.27044 -9.99890 -9.96838 -9.39851 -8.45500 -5.93825 1.40034 1.42215 1.52738 1.78081 2.05824 2.27091 2.28807 2.81773 3.21534 3.32035 3.41609 3.63077 3.75881 3.78323 3.81189 4.03215 4.06609 4.12261 4.22629 4.30251 4.31233 4.33538 4.43300 4.45389 4.46972 4.55541 4.65959 4.73047 4.74934 4.78709 4.86661 4.89617 4.91731 4.95108 4.96419 5.03942 5.07138 5.13269 5.18985 5.22276 5.25207 5.31631 5.41915 5.44435 5.65256 5.66726 5.80452 5.89977 6.07801 6.61136 6.68498 7.13747 7.37793 7.57366 8.12271 8.71688 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002358 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.820525 B =11872.947674 C =12708.106604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.104 0.896 4 C 0.517 3.483 5 O -0.561 6.561 6 N -0.712 5.712 7 C 0.175 3.825 8 C -0.150 4.150 9 C -0.108 4.108 10 C 0.031 3.969 11 N -0.501 5.501 12 C 0.045 3.955 13 C 0.442 3.558 14 O -0.611 6.611 15 N -0.574 5.574 16 C -0.329 4.329 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.921 5.921 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.271 1.271 24 C 0.041 3.959 25 C -0.087 4.087 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.405 0.595 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.069 0.931 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 -8.433 19.929 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.122 0.878 4 C 0.305 3.695 5 O -0.440 6.440 6 N -0.363 5.363 7 C 0.088 3.912 8 C -0.209 4.209 9 C -0.147 4.147 10 C -0.096 4.096 11 N -0.225 5.225 12 C -0.087 4.087 13 C 0.229 3.771 14 O -0.497 6.497 15 N -0.212 5.212 16 C -0.459 4.459 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.087 4.087 25 C -0.106 4.106 26 C -0.164 4.164 27 C -0.180 4.180 28 C -0.165 4.165 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.071 0.929 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.592 -8.399 20.692 23.021 hybrid contribution -0.654 0.048 -1.672 1.796 sum 4.938 -8.351 19.019 21.351 Atomic orbital electron populations 1.21735 0.91935 1.02507 1.03524 1.21402 0.98230 1.00588 0.91770 0.87784 1.21016 0.79351 0.84283 0.84841 1.90616 1.38938 1.27346 1.87119 1.46232 1.53470 1.31727 1.04906 1.20962 0.93993 0.92122 0.84153 1.22122 1.01102 0.94371 1.03273 1.22550 0.94153 1.00782 0.97250 1.23274 0.93585 0.95635 0.97143 1.65248 1.02758 1.36727 1.17779 1.21975 0.96397 0.99937 0.90372 1.20642 0.89188 0.84475 0.82757 1.90452 1.55277 1.60244 1.43721 1.41938 1.21320 1.50633 1.07282 1.19608 0.99463 1.33040 0.93784 0.90111 1.26034 1.02338 0.98525 0.94526 1.69671 1.38944 1.47398 1.00227 0.85005 0.77600 0.78466 0.77385 1.19702 1.19731 1.19653 1.23365 0.95841 0.94092 0.95449 1.22317 0.96286 0.98921 0.93098 1.22955 0.97837 0.99243 0.96397 1.22848 0.98082 1.01077 0.95944 1.22757 0.96125 1.01045 0.96585 0.89765 0.92733 0.92127 0.75927 0.92745 0.90927 0.91088 0.91760 0.89867 0.89030 0.92243 0.87161 0.91317 0.77120 0.91386 0.93199 0.90243 0.89837 0.89420 0.90424 0.89937 0.90970 0.92941 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.08 71.98 0.65 -1.50 16 2 C -0.10 -1.78 2.48 -11.54 -0.03 -1.81 16 3 H 0.10 1.72 7.94 -2.39 -0.02 1.70 16 4 C 0.52 12.39 6.14 87.66 0.54 12.93 16 5 O -0.56 -16.08 12.13 -3.03 -0.04 -16.11 16 6 N -0.71 -17.59 4.98 -418.86 -2.09 -19.67 16 7 C 0.17 4.54 1.01 4.50 0.00 4.55 16 8 C -0.15 -3.66 8.15 71.98 0.59 -3.07 16 9 C -0.11 -2.66 5.53 31.49 0.17 -2.49 16 10 C 0.03 0.76 6.49 86.45 0.56 1.32 16 11 N -0.50 -15.78 5.19 -885.31 -4.59 -20.37 16 12 C 0.04 1.51 5.39 85.56 0.46 1.97 16 13 C 0.44 20.33 7.43 87.66 0.65 20.98 16 14 O -0.61 -31.94 14.01 -3.05 -0.04 -31.98 16 15 N -0.57 -28.82 5.29 -306.98 -1.62 -30.44 16 16 C -0.33 -18.29 9.68 84.04 0.81 -17.47 16 17 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 18 C -0.01 -0.77 5.50 84.92 0.47 -0.30 16 19 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 20 Si 0.99 42.33 29.55 68.60 2.03 44.35 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 C 0.04 1.27 4.79 86.40 0.41 1.68 16 25 C -0.09 -1.52 2.72 -10.26 -0.03 -1.55 16 26 C -0.13 -1.68 7.63 31.12 0.24 -1.44 16 27 C -0.14 -2.05 8.08 31.11 0.25 -1.80 16 28 C -0.13 -2.45 6.19 31.11 0.19 -2.26 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.97 7.57 -2.39 -0.02 0.95 16 32 H 0.40 9.92 7.69 -92.71 -0.71 9.21 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.88 6.17 -2.39 -0.01 1.87 16 36 H 0.06 1.72 7.40 -2.39 -0.02 1.70 16 37 H 0.08 1.90 7.71 -2.38 -0.02 1.88 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.28 7.92 -2.38 -0.02 1.26 16 40 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.07 2.07 7.98 -2.39 -0.02 2.05 16 42 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 43 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.05 1.55 7.68 -2.39 -0.02 1.53 16 45 H 0.08 2.96 6.16 -2.38 -0.01 2.95 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.09 1.06 7.96 -2.38 -0.02 1.04 16 48 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.05 1.20 7.97 -2.39 -0.02 1.18 16 52 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -65.33 404.84 -0.65 -65.98 By element: Atomic # 1 Polarization: 48.04 SS G_CDS: -0.53 Total: 47.51 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.95 Total: 9.72 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -8.02 Total: -119.47 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.08 Total: -48.09 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -65.33 -0.65 -65.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671648528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.163 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds