Wall clock time and date at job start Tue Mar 31 2020 20:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 119.99928 * 2 1 4 4 C 1.30997 * 120.00017 * 179.97438 * 2 1 3 5 5 C 1.50704 * 119.99938 * 5.83342 * 4 2 1 6 6 C 1.50700 * 120.00262 * 185.82384 * 4 2 1 7 7 C 1.50697 * 109.47004 * 94.99970 * 6 4 2 8 8 O 1.21286 * 120.00075 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00368 * 180.02562 * 7 6 4 10 10 C 1.47426 * 125.65256 * 179.72112 * 9 7 6 11 11 C 1.55131 * 104.72398 * 155.81734 * 10 9 7 12 12 H 1.09000 * 111.22594 * 279.17465 * 11 10 9 13 13 N 1.46908 * 110.90364 * 155.27563 * 11 10 9 14 14 C 1.46896 * 111.00136 * 92.97707 * 13 11 10 15 15 C 1.50691 * 109.47292 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99931 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00148 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00078 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99937 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99991 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99629 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47022 * 89.99701 * 22 20 18 24 24 H 1.48497 * 109.47271 * 209.99744 * 22 20 18 25 25 H 1.48501 * 109.47037 * 329.99673 * 22 20 18 26 26 C 1.55158 * 101.48404 * 37.29861 * 11 10 9 27 27 H 1.08993 * 110.72243 * 82.69618 * 26 11 10 28 28 C 1.53006 * 110.71635 * 205.96913 * 26 11 10 29 29 C 1.47023 * 125.64751 * 0.02796 * 9 7 6 30 30 H 1.08997 * 109.47257 * 355.68296 * 1 2 3 31 31 H 1.08996 * 109.47435 * 235.68144 * 1 2 3 32 32 H 1.09006 * 109.47108 * 115.68040 * 1 2 3 33 33 H 1.09002 * 109.47363 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47262 * 120.00214 * 3 2 1 35 35 H 1.09000 * 109.46752 * 239.99651 * 3 2 1 36 36 H 1.08998 * 109.47192 * 93.86153 * 5 4 2 37 37 H 1.09003 * 109.46774 * 213.85926 * 5 4 2 38 38 H 1.09001 * 109.46950 * 333.85456 * 5 4 2 39 39 H 1.08993 * 109.47497 * 215.00600 * 6 4 2 40 40 H 1.09003 * 109.47064 * 335.01028 * 6 4 2 41 41 H 1.08999 * 110.36875 * 274.74709 * 10 9 7 42 42 H 1.08999 * 110.36913 * 37.06955 * 10 9 7 43 43 H 1.00904 * 110.99331 * 216.93062 * 13 11 10 44 44 H 1.09005 * 109.47188 * 299.99977 * 14 13 11 45 45 H 1.09008 * 109.47057 * 59.99610 * 14 13 11 46 46 H 0.96998 * 119.99859 * 0.02562 * 17 15 14 47 47 H 0.97007 * 119.99538 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.46720 * 174.97591 * 28 26 11 49 49 H 1.08999 * 109.47175 * 294.97274 * 28 26 11 50 50 H 1.08996 * 109.47132 * 54.97289 * 28 26 11 51 51 H 1.09002 * 109.88480 * 300.44140 * 29 9 7 52 52 H 1.09003 * 109.87843 * 61.45465 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4143 -2.4363 -0.1316 6 6 3.6631 -1.1378 0.1329 7 6 4.0394 -1.3338 1.5790 8 8 3.1737 -1.4589 2.4192 9 7 5.3377 -1.3700 1.9386 10 6 5.8444 -1.5487 3.3114 11 6 7.2707 -2.1320 3.1325 12 1 7.2375 -3.2051 2.9446 13 7 8.1106 -1.8304 4.2995 14 6 8.0629 -2.9239 5.2791 15 6 8.9348 -2.5797 6.4590 16 8 9.5371 -1.5272 6.4814 17 7 9.0454 -3.4415 7.4894 18 6 9.8391 -3.1285 8.5626 19 1 10.3754 -2.1913 8.5825 20 6 9.9535 -4.0172 9.6246 21 7 9.3006 -5.1573 9.6005 22 14 11.0343 -3.5906 11.0872 23 1 10.2290 -2.8667 12.1033 24 1 11.5768 -4.8382 11.6825 25 1 12.1565 -2.7276 10.6384 26 6 7.7640 -1.3627 1.8786 27 1 8.1459 -0.3799 2.1545 28 6 8.8292 -2.1693 1.1330 29 6 6.4833 -1.2316 1.0275 30 1 -0.3633 1.0247 0.0774 31 1 -0.3634 -0.5794 0.8487 32 1 -0.3634 -0.4454 -0.9262 33 1 1.5521 2.1336 -0.0005 34 1 2.8871 1.3629 0.8900 35 1 2.8871 1.3628 -0.8900 36 1 1.3840 -2.7332 -1.1799 37 1 1.9208 -3.2067 0.4498 38 1 0.3973 -2.3105 0.2400 39 1 4.0787 -1.9496 -0.4639 40 1 4.0612 -0.1865 -0.2202 41 1 5.8863 -0.5898 3.8281 42 1 5.2148 -2.2490 3.8601 43 1 9.0606 -1.6358 4.0205 44 1 7.0358 -3.0662 5.6151 45 1 8.4243 -3.8423 4.8163 46 1 8.5641 -4.2834 7.4713 47 1 9.3802 -5.7776 10.3422 48 1 9.0962 -1.6533 0.2109 49 1 9.7138 -2.2713 1.7616 50 1 8.4363 -3.1579 0.8956 51 1 6.4559 -2.0198 0.2751 52 1 6.4558 -0.2556 0.5430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673893566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:38 Heat of formation + Delta-G solvation = -67.487939 kcal Electronic energy + Delta-G solvation = -29149.271608 eV Core-core repulsion = 25148.412993 eV Total energy + Delta-G solvation = -4000.858615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.42879 -38.76385 -38.01956 -37.03264 -34.76048 -33.81373 -32.57755 -31.46414 -31.21478 -30.07275 -28.84016 -27.06071 -26.57479 -26.01632 -24.31565 -23.82670 -22.00478 -20.57329 -19.66240 -19.15542 -17.88424 -17.29799 -17.15601 -16.72954 -15.94565 -15.75673 -15.25993 -15.18179 -14.72170 -14.53775 -14.39249 -14.23970 -14.13983 -13.75213 -13.67582 -13.35247 -13.18628 -13.10993 -12.93801 -12.63995 -12.48907 -12.38772 -12.34444 -12.20910 -12.15193 -11.96962 -11.60911 -11.54265 -11.51616 -11.30780 -11.20440 -11.02852 -10.98120 -10.65742 -10.39573 -10.22023 -9.97692 -9.51382 -8.78176 -8.69610 -8.49020 -8.15189 -7.96857 -6.41955 -3.82853 1.81288 2.53674 2.88399 3.18029 3.26700 3.32278 3.89414 4.03717 4.15810 4.26377 4.35703 4.42813 4.61337 4.67884 4.75011 4.81675 5.00100 5.05847 5.11835 5.13759 5.18428 5.21063 5.21979 5.23967 5.27598 5.30811 5.40821 5.48228 5.54854 5.57290 5.57961 5.65525 5.69490 5.72303 5.74776 5.82140 5.84552 5.85313 5.93141 5.96533 6.03175 6.13082 6.27492 6.40372 6.74566 7.15051 7.37226 7.54996 7.57933 8.05618 8.07164 8.60419 9.17325 9.53607 10.04675 10.75700 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.001927 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.623549 B =14523.807934 C =15251.794992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.100 4.100 7 C 0.530 3.470 8 O -0.531 6.531 9 N -0.621 5.621 10 C 0.116 3.884 11 C 0.078 3.922 12 H 0.063 0.937 13 N -0.655 5.655 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.108 4.108 27 H 0.098 0.902 28 C -0.145 4.145 29 C 0.108 3.892 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.355 0.645 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 5.340 -25.230 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.174 4.174 4 C -0.120 4.120 5 C -0.169 4.169 6 C -0.140 4.140 7 C 0.319 3.681 8 O -0.407 6.407 9 N -0.357 5.357 10 C -0.007 4.007 11 C -0.034 4.034 12 H 0.080 0.920 13 N -0.289 5.289 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.127 4.127 27 H 0.116 0.884 28 C -0.203 4.203 29 C -0.016 4.016 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.176 0.824 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.196 6.193 -24.309 27.893 hybrid contribution 0.856 -1.118 0.380 1.459 sum -11.340 5.074 -23.929 26.962 Atomic orbital electron populations 1.20821 0.92066 1.02177 1.01832 1.21386 0.95796 0.94402 1.01006 1.20863 1.00005 0.94890 1.01650 1.20765 0.93175 0.95192 1.02840 1.20776 1.00147 0.94899 1.01114 1.20646 0.95072 1.04414 0.93839 1.20215 0.80551 0.76561 0.90795 1.90730 1.47763 1.49229 1.52930 1.48482 1.05019 1.72607 1.09573 1.22309 0.93618 1.02047 0.82767 1.22786 0.93296 0.97688 0.89606 0.91952 1.59937 1.16137 1.41473 1.11336 1.21758 1.01016 0.92110 0.93407 1.19759 0.86504 0.86132 0.84996 1.90523 1.50174 1.25264 1.80817 1.41864 1.42625 1.18738 1.16705 1.19703 1.23004 1.04866 0.95346 0.87894 1.25274 0.98149 0.95244 0.99315 1.69615 1.42384 1.09074 1.33154 0.85847 0.79893 0.77743 0.80741 1.20372 1.20946 1.19431 1.22426 0.94491 1.01146 0.94674 0.88375 1.21797 0.98423 0.99677 1.00358 1.22096 0.85119 1.01505 0.92865 0.92227 0.91350 0.91795 0.92002 0.91809 0.91652 0.91778 0.92067 0.91521 0.88680 0.88381 0.90097 0.90586 0.82441 0.89522 0.93679 0.77444 0.91856 0.91976 0.91729 0.92371 0.91255 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 8.67 36.00 0.31 -0.55 16 2 C -0.13 -1.14 6.04 -101.07 -0.61 -1.75 16 3 C -0.12 -0.92 8.61 36.01 0.31 -0.61 16 4 C -0.12 -1.13 4.54 -101.06 -0.46 -1.59 16 5 C -0.11 -0.97 9.70 36.01 0.35 -0.62 16 6 C -0.10 -0.87 4.66 -29.04 -0.14 -1.00 16 7 C 0.53 6.55 7.84 -10.99 -0.09 6.46 16 8 O -0.53 -8.78 16.29 5.55 0.09 -8.69 16 9 N -0.62 -6.98 3.32 -170.38 -0.57 -7.55 16 10 C 0.12 1.52 6.61 -2.41 -0.02 1.50 16 11 C 0.08 0.92 2.84 -65.44 -0.19 0.73 16 12 H 0.06 0.73 7.72 -51.93 -0.40 0.32 16 13 N -0.66 -10.03 6.03 -105.60 -0.64 -10.67 16 14 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 15 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 16 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 17 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 22 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.11 -0.96 2.95 -88.78 -0.26 -1.23 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 C -0.14 -1.07 9.13 37.16 0.34 -0.73 16 29 C 0.11 0.86 6.08 -3.06 -0.02 0.84 16 30 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 31 H 0.07 0.57 7.38 -51.93 -0.38 0.19 16 32 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 34 H 0.06 0.59 7.94 -51.93 -0.41 0.17 16 35 H 0.06 0.41 7.62 -51.93 -0.40 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.56 6.21 -51.93 -0.32 0.24 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.69 6.26 -51.93 -0.33 0.36 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 43 H 0.35 5.46 8.14 -39.29 -0.32 5.14 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.05 0.70 8.09 -51.92 -0.42 0.28 16 46 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 51 H 0.07 0.44 7.82 -51.93 -0.41 0.04 16 52 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 420.84 15.07 6.34 6.34 Total: -1.00 -33.52 420.84 -8.94 -42.46 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -9.08 Total: 11.32 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.82 Total: 4.48 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.54 Total: -56.43 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: 0.18 Total: -24.27 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.52 -8.94 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673893566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.025 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds